RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 NFX1Q12986 1120 aaKnown RBP10.07□□□□□ -0.8
CD44-239ENST00000639002 LCE2CQ5TA81 110 aa10.07□□□□□ -0.8
CD44-239ENST00000639002 ZBTB33Q86T24 672 aa10.07□□□□□ -0.8
CD44-239ENST00000639002 PURBQ96QR8 312 aaKnown RBP10.06□□□□□ -0.8
CD44-239ENST00000639002 KCTD15Q96SI1 283 aaPredicted RBP10.06□□□□□ -0.8
CD44-239ENST00000639002 CCDC116Q8IYX3 515 aa10.05□□□□□ -0.8
CD44-239ENST00000639002 SLC10A4Q96EP9 437 aa10.04□□□□□ -0.8
CD44-239ENST00000639002 GPR37L1O60883 481 aa10.03□□□□□ -0.8
CD44-239ENST00000639002 PPP1R26Q5T8A7 1209 aaPredicted RBP10.03□□□□□ -0.8
CD44-239ENST00000639002 MEIOBQ8N635 442 aa10.03□□□□□ -0.8
CD44-239ENST00000639002 BANK1Q8NDB2 785 aa10.03□□□□□ -0.8
CD44-239ENST00000639002 SNRKQ9NRH2 765 aa10.03□□□□□ -0.8
CD44-239ENST00000639002 EMILIN1Q9Y6C2 1016 aa10.03□□□□□ -0.8
CD44-239ENST00000639002 TERTO14746 1132 aaKnown RBP10.02□□□□□ -0.81
CD44-239ENST00000639002 INTS6LQ5JSJ4 861 aaKnown RBP10.02□□□□□ -0.81
CD44-239ENST00000639002 MTMR14Q8NCE2 650 aa10.02□□□□□ -0.81
CD44-239ENST00000639002 CDV3Q9UKY7 258 aaKnown RBP10.02□□□□□ -0.81
CD44-239ENST00000639002 WFS1O76024 890 aa10.01□□□□□ -0.81
CD44-239ENST00000639002 PNMA1Q8ND90 353 aa10.01□□□□□ -0.81
CD44-239ENST00000639002 SOBPA7XYQ1 873 aa10□□□□□ -0.81
CD44-239ENST00000639002 CBLBQ13191 982 aa10□□□□□ -0.81
CD44-239ENST00000639002 SCARF1Q14162 830 aa10□□□□□ -0.81
CD44-239ENST00000639002 C6orf118Q5T5N4 469 aa10□□□□□ -0.81
CD44-239ENST00000639002 Q6ZVU0 165 aa9.99□□□□□ -0.81
CD44-239ENST00000639002 LINC00528Q8N1L1 170 aa9.99□□□□□ -0.81
CD44-239ENST00000639002 FBXO45P0C2W1 286 aa9.98□□□□□ -0.81
CD44-239ENST00000639002 ZBBXA8MT70 800 aa9.97□□□□□ -0.81
CD44-239ENST00000639002 ESPNB1AK53 854 aa9.97□□□□□ -0.81
CD44-239ENST00000639002 SOCS7O14512 581 aa9.97□□□□□ -0.81
CD44-239ENST00000639002 DZIP3Q86Y13 1208 aaKnown RBP9.97□□□□□ -0.81
CD44-239ENST00000639002 TMPRSS4Q9NRS4 437 aa9.97□□□□□ -0.81
CD44-239ENST00000639002 NXF1Q9UBU9 619 aaKnown RBP9.97□□□□□ -0.81
CD44-239ENST00000639002 BMP2P12643 396 aa9.95□□□□□ -0.82
CD44-239ENST00000639002 DHX9Q08211 1270 aaKnown RBP9.95□□□□□ -0.82
CD44-239ENST00000639002 PGPEP1Q9NXJ5 209 aa9.95□□□□□ -0.82
CD44-239ENST00000639002 SOS2Q07890 1332 aaPredicted RBP9.95□□□□□ -0.82
CD44-239ENST00000639002 ERVH48-1M5A8F1 160 aa9.94□□□□□ -0.82
CD44-239ENST00000639002 VEGFBP49765 207 aa9.94□□□□□ -0.82
CD44-239ENST00000639002 NBPF20Q3BBV1 942 aa9.94□□□□□ -0.82
CD44-239ENST00000639002 TSEN34Q9BSV6 310 aaKnown RBP9.94□□□□□ -0.82
CD44-239ENST00000639002 LILRA1O75019 489 aa9.93□□□□□ -0.82
CD44-239ENST00000639002 ADD1P35611 737 aaKnown RBP9.93□□□□□ -0.82
CD44-239ENST00000639002 RAB15P59190 212 aa9.93□□□□□ -0.82
CD44-239ENST00000639002 GIGYF1O75420 1035 aaPredicted RBP9.92□□□□□ -0.82
CD44-239ENST00000639002 UPP2O95045 317 aa9.92□□□□□ -0.82
CD44-239ENST00000639002 KDF1Q8NAX2 398 aaPredicted RBP9.92□□□□□ -0.82
CD44-239ENST00000639002 ZNF784Q8NCA9 323 aaPredicted RBP9.92□□□□□ -0.82
CD44-239ENST00000639002 AGBL1Q96MI9 1066 aa9.92□□□□□ -0.82
CD44-239ENST00000639002 DNMT3LQ9UJW3 386 aa9.92□□□□□ -0.82
CD44-239ENST00000639002 NR1H3Q13133 447 aa9.91□□□□□ -0.82
CD44-239ENST00000639002 PCDHB9Q9Y5E1 797 aa9.91□□□□□ -0.82
CD44-239ENST00000639002 NDUFB9Q9Y6M9 179 aa9.91□□□□□ -0.82
CD44-239ENST00000639002 H3BM21 787 aa9.9□□□□□ -0.82
CD44-239ENST00000639002 SPINT1O43278 529 aa9.9□□□□□ -0.82
CD44-239ENST00000639002 WIPF1O43516 503 aa9.9□□□□□ -0.82
CD44-239ENST00000639002 NPAS3Q8IXF0 933 aa9.9□□□□□ -0.82
CD44-239ENST00000639002 MAN1A2O60476 641 aa9.89□□□□□ -0.83
CD44-239ENST00000639002 ERBB4Q15303 1308 aa9.88□□□□□ -0.83
CD44-239ENST00000639002 SEPT12Q8IYM1 358 aa9.88□□□□□ -0.83
CD44-239ENST00000639002 TBC1D2BQ9UPU7 963 aa9.88□□□□□ -0.83
CD44-239ENST00000639002 TTLL8A6PVC2 850 aa9.87□□□□□ -0.83
CD44-239ENST00000639002 RELBQ01201 579 aa9.87□□□□□ -0.83
CD44-239ENST00000639002 FIGNL2A6NMB9 653 aa9.86□□□□□ -0.83
CD44-239ENST00000639002 CTSOP43234 321 aaPredicted RBP9.86□□□□□ -0.83
CD44-239ENST00000639002 IRF5Q13568 498 aa9.86□□□□□ -0.83
CD44-239ENST00000639002 SLC16A10Q8TF71 515 aa9.86□□□□□ -0.83
CD44-239ENST00000639002 ZNF395Q9H8N7 513 aaPredicted RBP9.86□□□□□ -0.83
CD44-239ENST00000639002 ADH1AP07327 375 aa9.85□□□□□ -0.83
CD44-239ENST00000639002 GMPRP36959 345 aa9.85□□□□□ -0.83
CD44-239ENST00000639002 INSM2Q96T92 566 aaPredicted RBP9.85□□□□□ -0.83
CD44-239ENST00000639002 CYLDQ9NQC7 956 aa9.85□□□□□ -0.83
CD44-239ENST00000639002 PPFIA3O75145 1194 aa9.83□□□□□ -0.84
CD44-239ENST00000639002 PTGIRP43119 386 aa9.83□□□□□ -0.84
CD44-239ENST00000639002 IRF7Q92985 503 aa9.83□□□□□ -0.84
CD44-239ENST00000639002 APBB1O00213 710 aa9.82□□□□□ -0.84
CD44-239ENST00000639002 MCCD1P59942 119 aaPredicted RBP9.82□□□□□ -0.84
CD44-239ENST00000639002 ZNF800Q2TB10 664 aaPredicted RBP eCLIP9.82□□□□□ -0.84
CD44-239ENST00000639002 LORP23490 312 aaPredicted RBP9.81□□□□□ -0.84
CD44-239ENST00000639002 VSIG8P0DPA2 414 aa9.8□□□□□ -0.84
CD44-239ENST00000639002 SCTRP47872 440 aa9.8□□□□□ -0.84
CD44-239ENST00000639002 ERVK-9P63128 1117 aa9.8□□□□□ -0.84
CD44-239ENST00000639002 PTSQ03393 145 aa9.8□□□□□ -0.84
CD44-239ENST00000639002 FOXD4L5Q5VV16 416 aaPredicted RBP9.8□□□□□ -0.84
CD44-239ENST00000639002 RNF217Q8TC41 542 aa9.8□□□□□ -0.84
CD44-239ENST00000639002 CEP126Q9P2H0 1117 aa9.8□□□□□ -0.84
CD44-239ENST00000639002 GDPD2Q9HCC8 539 aa9.79□□□□□ -0.84
CD44-239ENST00000639002 MCM6Q14566 821 aa9.78□□□□□ -0.84
CD44-239ENST00000639002 RNF20Q5VTR2 975 aa9.78□□□□□ -0.84
CD44-239ENST00000639002 POLMQ9NP87 494 aaPredicted RBP9.78□□□□□ -0.84
CD44-239ENST00000639002 ZNF330Q9Y3S2 320 aaPredicted RBP9.78□□□□□ -0.84
CD44-239ENST00000639002 SLC35F4A4IF30 521 aa9.77□□□□□ -0.85
CD44-239ENST00000639002 TSGA10IPQ3SY00 556 aa9.77□□□□□ -0.85
CD44-239ENST00000639002 CC2D2BQ6DHV5 1058 aa9.77□□□□□ -0.85
CD44-239ENST00000639002 CCDC125Q86Z20 511 aa9.77□□□□□ -0.85
CD44-239ENST00000639002 CCDC85AQ96PX6 553 aaPredicted RBP9.77□□□□□ -0.85
CD44-239ENST00000639002 PHTF2Q8N3S3 785 aa9.76□□□□□ -0.85
CD44-239ENST00000639002 GPR161Q8N6U8 529 aaKnown RBP9.76□□□□□ -0.85
CD44-239ENST00000639002 CDCA7Q9BWT1 371 aaPredicted RBP9.76□□□□□ -0.85
CD44-239ENST00000639002 OSBPL3Q9H4L5 887 aa9.76□□□□□ -0.85
CD44-239ENST00000639002 PCDHB11Q9Y5F2 797 aa9.76□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms