RNA–Protein interactions for RNA: ENST00000637988.1

SCN1A-217, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,562 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-217ENST00000637988 CCDC191Q8NCU4 936 aa7.26□□□□□ -1.25
SCN1A-217ENST00000637988 UBAC1Q9BSL1 405 aa7.26□□□□□ -1.25
SCN1A-217ENST00000637988 SSX2IPQ9Y2D8 614 aa7.26□□□□□ -1.25
SCN1A-217ENST00000637988 B4DLN1 442 aa7.26□□□□□ -1.25
SCN1A-217ENST00000637988 UBAP1LF5GYI3 381 aa7.26□□□□□ -1.25
SCN1A-217ENST00000637988 SMC2O95347 1197 aa7.26□□□□□ -1.25
SCN1A-217ENST00000637988 MRPL12P52815 198 aaKnown RBP7.26□□□□□ -1.25
SCN1A-217ENST00000637988 DZIP1Q86YF9 867 aaKnown RBP7.26□□□□□ -1.25
SCN1A-217ENST00000637988 MYL6BP14649 208 aa7.25□□□□□ -1.25
SCN1A-217ENST00000637988 CCDC181Q5TID7 509 aa7.25□□□□□ -1.25
SCN1A-217ENST00000637988 CENPQQ7L2Z9 268 aaPredicted RBP7.25□□□□□ -1.25
SCN1A-217ENST00000637988 KIF21BO75037 1637 aa7.25□□□□□ -1.25
SCN1A-217ENST00000637988 RFC4P35249 363 aa7.25□□□□□ -1.25
SCN1A-217ENST00000637988 HSP90AB3PQ58FF7 597 aa7.25□□□□□ -1.25
SCN1A-217ENST00000637988 ZNF592Q92610 1267 aa7.25□□□□□ -1.25
SCN1A-217ENST00000637988 ERCC4Q92889 916 aaPredicted RBP7.25□□□□□ -1.25
SCN1A-217ENST00000637988 LRRC45Q96CN5 670 aa7.25□□□□□ -1.25
SCN1A-217ENST00000637988 DACH1Q9UI36 760 aa7.25□□□□□ -1.25
SCN1A-217ENST00000637988 BTBD11A6QL63 1104 aa7.25□□□□□ -1.25
SCN1A-217ENST00000637988 PDILTQ8N807 584 aa7.25□□□□□ -1.25
SCN1A-217ENST00000637988 FERMT2Q96AC1 680 aa7.25□□□□□ -1.25
SCN1A-217ENST00000637988 PDCP20941 246 aa7.25□□□□□ -1.25
SCN1A-217ENST00000637988 GRIN2BQ13224 1484 aa7.25□□□□□ -1.25
SCN1A-217ENST00000637988 EPB41L2O43491 1005 aaKnown RBP7.25□□□□□ -1.25
SCN1A-217ENST00000637988 TANGO6Q9C0B7 1094 aa7.25□□□□□ -1.25
SCN1A-217ENST00000637988 HDAC9Q9UKV0 1011 aa7.25□□□□□ -1.25
SCN1A-217ENST00000637988 ZNF530Q6P9A1 599 aaPredicted RBP7.25□□□□□ -1.25
SCN1A-217ENST00000637988 SDF4Q9BRK5 362 aa7.25□□□□□ -1.25
SCN1A-217ENST00000637988 MRC2Q9UBG0 1479 aa7.25□□□□□ -1.25
SCN1A-217ENST00000637988 A0A087WZG4 1122 aa7.24□□□□□ -1.25
SCN1A-217ENST00000637988 HSP90B2PQ58FF3 399 aa7.24□□□□□ -1.25
SCN1A-217ENST00000637988 DZIP1LQ8IYY4 767 aaKnown RBP7.24□□□□□ -1.25
SCN1A-217ENST00000637988 FERMT1Q9BQL6 677 aa7.24□□□□□ -1.25
SCN1A-217ENST00000637988 IL27Q8NEV9 243 aa7.24□□□□□ -1.25
SCN1A-217ENST00000637988 MAP7D2Q96T17 732 aa7.24□□□□□ -1.25
SCN1A-217ENST00000637988 ZMYND15Q9H091 742 aa7.24□□□□□ -1.25
SCN1A-217ENST00000637988 GIGYF2Q6Y7W6 1299 aaKnown RBP7.24□□□□□ -1.25
SCN1A-217ENST00000637988 ZNF622Q969S3 477 aaKnown RBP eCLIP7.24□□□□□ -1.25
SCN1A-217ENST00000637988 DEF6Q9H4E7 631 aa7.24□□□□□ -1.25
SCN1A-217ENST00000637988 SEPT11Q9NVA2 429 aaKnown RBP7.24□□□□□ -1.25
SCN1A-217ENST00000637988 GOLGA6L10A6NI86 522 aa7.24□□□□□ -1.25
SCN1A-217ENST00000637988 SLC52A1Q9NWF4 448 aa7.24□□□□□ -1.25
SCN1A-217ENST00000637988 ARGLU1Q9NWB6 273 aaPredicted RBP7.24□□□□□ -1.25
SCN1A-217ENST00000637988 DDX49Q9Y6V7 483 aaKnown RBP7.24□□□□□ -1.25
SCN1A-217ENST00000637988 SUPT6HQ7KZ85 1726 aaKnown RBP7.24□□□□□ -1.25
SCN1A-217ENST00000637988 CFAP65Q6ZU64 1925 aaKnown RBP7.24□□□□□ -1.25
SCN1A-217ENST00000637988 CCP110O43303 1012 aa7.24□□□□□ -1.25
SCN1A-217ENST00000637988 MKNK2Q9HBH9 465 aa7.24□□□□□ -1.25
SCN1A-217ENST00000637988 CABP2Q9NPB3 220 aa7.24□□□□□ -1.25
SCN1A-217ENST00000637988 KINO60870 393 aaKnown RBP7.24□□□□□ -1.25
SCN1A-217ENST00000637988 MRPS9P82933 396 aaKnown RBP7.24□□□□□ -1.25
SCN1A-217ENST00000637988 HMGN5P82970 282 aaKnown RBP7.24□□□□□ -1.25
SCN1A-217ENST00000637988 ANKRD1Q15327 319 aa7.24□□□□□ -1.25
SCN1A-217ENST00000637988 WASF1Q92558 559 aa7.24□□□□□ -1.25
SCN1A-217ENST00000637988 COMMD10Q9Y6G5 202 aa7.24□□□□□ -1.25
SCN1A-217ENST00000637988 USP47Q96K76 1375 aa7.23□□□□□ -1.25
SCN1A-217ENST00000637988 EXOC5O00471 708 aa7.23□□□□□ -1.25
SCN1A-217ENST00000637988 NCBP1Q09161 790 aaKnown RBP7.23□□□□□ -1.25
SCN1A-217ENST00000637988 LRRCC1Q9C099 1032 aa7.23□□□□□ -1.25
SCN1A-217ENST00000637988 AKAP2Q9Y2D5 859 aa7.23□□□□□ -1.25
SCN1A-217ENST00000637988 KIF4AO95239 1232 aa7.23□□□□□ -1.25
SCN1A-217ENST00000637988 ENOX2Q16206 610 aaKnown RBP7.23□□□□□ -1.25
SCN1A-217ENST00000637988 OGFOD1Q8N543 542 aa7.23□□□□□ -1.25
SCN1A-217ENST00000637988 L3MBTL2Q969R5 705 aa7.23□□□□□ -1.25
SCN1A-217ENST00000637988 HECW1Q76N89 1606 aa7.23□□□□□ -1.25
SCN1A-217ENST00000637988 FKBP4Q02790 459 aaKnown RBP eCLIP7.23□□□□□ -1.25
SCN1A-217ENST00000637988 RABEP1Q15276 862 aa7.23□□□□□ -1.25
SCN1A-217ENST00000637988 FAM161AQ3B820 660 aa7.23□□□□□ -1.25
SCN1A-217ENST00000637988 NUP133Q8WUM0 1156 aa7.23□□□□□ -1.25
SCN1A-217ENST00000637988 MSH6P52701 1360 aa7.23□□□□□ -1.25
SCN1A-217ENST00000637988 CCDC7Q96M83 1385 aa7.23□□□□□ -1.25
SCN1A-217ENST00000637988 SSR1P43307 286 aaKnown RBP7.23□□□□□ -1.25
SCN1A-217ENST00000637988 CTNNA3Q9UI47 895 aa7.23□□□□□ -1.25
SCN1A-217ENST00000637988 RTEL1-TNFRSF6BF6WH68 1400 aa7.23□□□□□ -1.25
SCN1A-217ENST00000637988 GNAI2P04899 355 aa7.22□□□□□ -1.25
SCN1A-217ENST00000637988 PIBF1Q8WXW3 757 aa7.22□□□□□ -1.25
SCN1A-217ENST00000637988 PPP6R1Q9UPN7 881 aa7.22□□□□□ -1.25
SCN1A-217ENST00000637988 HLA-DOAP06340 250 aa7.22□□□□□ -1.25
SCN1A-217ENST00000637988 HDGFL1Q5TGJ6 251 aa7.22□□□□□ -1.25
SCN1A-217ENST00000637988 CABP5Q9NP86 173 aa7.22□□□□□ -1.25
SCN1A-217ENST00000637988 PRG4Q92954 1404 aaPredicted RBP7.22□□□□□ -1.25
SCN1A-217ENST00000637988 KDM4AO75164 1064 aa7.22□□□□□ -1.25
SCN1A-217ENST00000637988 SSBP05455 408 aaKnown RBP eCLIP7.22□□□□□ -1.25
SCN1A-217ENST00000637988 AAMPQ13685 434 aa7.22□□□□□ -1.25
SCN1A-217ENST00000637988 DHX8Q14562 1220 aaKnown RBP7.22□□□□□ -1.25
SCN1A-217ENST00000637988 RAB34Q9BZG1 259 aa7.22□□□□□ -1.25
SCN1A-217ENST00000637988 SURF6O75683 361 aaKnown RBP7.22□□□□□ -1.25
SCN1A-217ENST00000637988 PPP4R3BQ5MIZ7 849 aa7.22□□□□□ -1.25
SCN1A-217ENST00000637988 STK11IPQ8N1F8 1099 aa7.22□□□□□ -1.25
SCN1A-217ENST00000637988 ATP2B1P20020 1258 aa7.22□□□□□ -1.25
SCN1A-217ENST00000637988 JAKMIP3Q5VZ66 844 aa7.22□□□□□ -1.25
SCN1A-217ENST00000637988 UTP14AQ9BVJ6 771 aaKnown RBP7.22□□□□□ -1.25
SCN1A-217ENST00000637988 IFIT1P09914 478 aaKnown RBP7.22□□□□□ -1.25
SCN1A-217ENST00000637988 STAMBPO95630 424 aa7.21□□□□□ -1.25
SCN1A-217ENST00000637988 CCDC96Q2M329 555 aa7.21□□□□□ -1.25
SCN1A-217ENST00000637988 CEP126Q9P2H0 1117 aa7.21□□□□□ -1.25
SCN1A-217ENST00000637988 CEP131Q9UPN4 1083 aa7.21□□□□□ -1.25
SCN1A-217ENST00000637988 RGS22Q8NE09 1264 aa7.21□□□□□ -1.25
SCN1A-217ENST00000637988 MNS1Q8NEH6 495 aa7.21□□□□□ -1.25
SCN1A-217ENST00000637988 PRAM1Q96QH2 718 aa7.21□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms