RNA–Protein interactions for RNA: ENST00000636238.1

CIITA-214, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 5

Gene CIITA, Length 498 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-214ENST00000636238 KDM2AQ9Y2K7 1162 aa10.65□□□□□ -0.7
CIITA-214ENST00000636238 C1QTNF8P60827 252 aa10.64□□□□□ -0.71
CIITA-214ENST00000636238 TXNRD1Q16881 649 aa10.64□□□□□ -0.71
CIITA-214ENST00000636238 PROM2Q8N271 834 aa10.64□□□□□ -0.71
CIITA-214ENST00000636238 SGIP1Q9BQI5 828 aa10.64□□□□□ -0.71
CIITA-214ENST00000636238 USP6P35125 1406 aa10.64□□□□□ -0.71
CIITA-214ENST00000636238 PPIP5K1Q6PFW1 1433 aa10.64□□□□□ -0.71
CIITA-214ENST00000636238 CASZ1Q86V15 1759 aa10.64□□□□□ -0.71
CIITA-214ENST00000636238 ARHGEF28Q8N1W1 1705 aaKnown RBP10.64□□□□□ -0.71
CIITA-214ENST00000636238 CCDC7Q96M83 1385 aa10.64□□□□□ -0.71
CIITA-214ENST00000636238 ABCC6O95255 1503 aa10.63□□□□□ -0.71
CIITA-214ENST00000636238 NLRP6P59044 892 aa10.63□□□□□ -0.71
CIITA-214ENST00000636238 MARCH10Q8NA82 808 aaPredicted RBP10.63□□□□□ -0.71
CIITA-214ENST00000636238 CENPJQ9HC77 1338 aaPredicted RBP10.62□□□□□ -0.71
CIITA-214ENST00000636238 CPSF1Q10570 1443 aaKnown RBP10.62□□□□□ -0.71
CIITA-214ENST00000636238 EXOC5O00471 708 aa10.62□□□□□ -0.71
CIITA-214ENST00000636238 ZBTB7AO95365 584 aa10.62□□□□□ -0.71
CIITA-214ENST00000636238 SRPK2P78362 688 aaKnown RBP10.62□□□□□ -0.71
CIITA-214ENST00000636238 SLC16A10Q8TF71 515 aa10.62□□□□□ -0.71
CIITA-214ENST00000636238 ZNF692Q9BU19 519 aaPredicted RBP10.62□□□□□ -0.71
CIITA-214ENST00000636238 FHDC1Q9C0D6 1143 aaPredicted RBP10.62□□□□□ -0.71
CIITA-214ENST00000636238 LRRC37A3O60309 1634 aa10.62□□□□□ -0.71
CIITA-214ENST00000636238 SENP3-EIF4A1A0A087X0R7 540 aa10.61□□□□□ -0.71
CIITA-214ENST00000636238 ARHGEF25Q86VW2 580 aa10.61□□□□□ -0.71
CIITA-214ENST00000636238 ARXQ96QS3 562 aa10.61□□□□□ -0.71
CIITA-214ENST00000636238 KIAA1210Q9ULL0 1709 aa10.61□□□□□ -0.71
CIITA-214ENST00000636238 TTC21AQ8NDW8 1320 aa10.6□□□□□ -0.71
CIITA-214ENST00000636238 TNS2Q63HR2 1409 aa10.6□□□□□ -0.71
CIITA-214ENST00000636238 ZEB1P37275 1124 aaPredicted RBP10.6□□□□□ -0.71
CIITA-214ENST00000636238 IFFO2Q5TF58 517 aa10.6□□□□□ -0.71
CIITA-214ENST00000636238 HMGB2P26583 209 aaKnown RBP10.59□□□□□ -0.71
CIITA-214ENST00000636238 ATF5Q9Y2D1 282 aaPredicted RBP10.59□□□□□ -0.71
CIITA-214ENST00000636238 PDGFDQ9GZP0 370 aaPredicted RBP10.58□□□□□ -0.72
CIITA-214ENST00000636238 CABP1Q9NZU7 370 aa10.58□□□□□ -0.72
CIITA-214ENST00000636238 AXIN2Q9Y2T1 843 aa10.58□□□□□ -0.72
CIITA-214ENST00000636238 EVC2Q86UK5 1308 aa10.58□□□□□ -0.72
CIITA-214ENST00000636238 MYOM1P52179 1685 aa10.57□□□□□ -0.72
CIITA-214ENST00000636238 UTRNP46939 3433 aa10.57□□□□□ -0.72
CIITA-214ENST00000636238 GIGYF1O75420 1035 aaPredicted RBP10.57□□□□□ -0.72
CIITA-214ENST00000636238 CSB-PGBD3P0DP91 1061 aa10.57□□□□□ -0.72
CIITA-214ENST00000636238 SLC27A3Q5K4L6 730 aa10.57□□□□□ -0.72
CIITA-214ENST00000636238 TRPM1Q7Z4N2 1603 aa10.56□□□□□ -0.72
CIITA-214ENST00000636238 POLD1P28340 1107 aa10.56□□□□□ -0.72
CIITA-214ENST00000636238 PTF1AQ7RTS3 328 aa10.56□□□□□ -0.72
CIITA-214ENST00000636238 CABP2Q9NPB3 220 aa10.56□□□□□ -0.72
CIITA-214ENST00000636238 TTC21BQ7Z4L5 1316 aa10.56□□□□□ -0.72
CIITA-214ENST00000636238 ZBTB7CA1YPR0 619 aa10.55□□□□□ -0.72
CIITA-214ENST00000636238 GRIN3BO60391 1043 aa10.55□□□□□ -0.72
CIITA-214ENST00000636238 COL18A1P39060 1754 aa10.54□□□□□ -0.72
CIITA-214ENST00000636238 USP31Q70CQ4 1352 aa10.54□□□□□ -0.72
CIITA-214ENST00000636238 GPR162Q16538 588 aa10.54□□□□□ -0.72
CIITA-214ENST00000636238 PAPPAQ13219 1627 aa10.54□□□□□ -0.72
CIITA-214ENST00000636238 ERBB3P21860 1342 aa10.54□□□□□ -0.72
CIITA-214ENST00000636238 SBF2Q86WG5 1849 aa10.54□□□□□ -0.72
CIITA-214ENST00000636238 IL2RBP14784 551 aa10.53□□□□□ -0.72
CIITA-214ENST00000636238 NBPF1Q3BBV0 1214 aa10.53□□□□□ -0.72
CIITA-214ENST00000636238 QRICH2Q9H0J4 1663 aa10.53□□□□□ -0.72
CIITA-214ENST00000636238 NFAT5O94916 1531 aa10.53□□□□□ -0.72
CIITA-214ENST00000636238 AKT1S1Q96B36 256 aa10.52□□□□□ -0.73
CIITA-214ENST00000636238 NHSQ6T4R5 1651 aa10.52□□□□□ -0.73
CIITA-214ENST00000636238 WNK3Q9BYP7 1800 aa10.51□□□□□ -0.73
CIITA-214ENST00000636238 PIK3C2AO00443 1686 aa10.51□□□□□ -0.73
CIITA-214ENST00000636238 SIN3AQ96ST3 1273 aa10.51□□□□□ -0.73
CIITA-214ENST00000636238 ZNF827Q17R98 1081 aa10.5□□□□□ -0.73
CIITA-214ENST00000636238 CLSPNQ9HAW4 1339 aa10.5□□□□□ -0.73
CIITA-214ENST00000636238 SBNO2Q9Y2G9 1366 aa10.5□□□□□ -0.73
CIITA-214ENST00000636238 AKAP12Q02952 1782 aa10.49□□□□□ -0.73
CIITA-214ENST00000636238 NEUROD1Q13562 356 aa10.49□□□□□ -0.73
CIITA-214ENST00000636238 NLRP2Q9NX02 1062 aa10.49□□□□□ -0.73
CIITA-214ENST00000636238 KTN1Q86UP2 1357 aaKnown RBP10.49□□□□□ -0.73
CIITA-214ENST00000636238 LRRC4BQ9NT99 713 aa10.48□□□□□ -0.73
CIITA-214ENST00000636238 PNPLA7Q6ZV29 1317 aa10.48□□□□□ -0.73
CIITA-214ENST00000636238 CHD4Q14839 1912 aa10.47□□□□□ -0.73
CIITA-214ENST00000636238 ACSBG1Q96GR2 724 aa10.47□□□□□ -0.73
CIITA-214ENST00000636238 PUS7Q96PZ0 661 aaKnown RBP10.47□□□□□ -0.73
CIITA-214ENST00000636238 TFCP2L1Q9NZI6 479 aa10.47□□□□□ -0.73
CIITA-214ENST00000636238 ANKRD36BQ8N2N9 1353 aa10.47□□□□□ -0.73
CIITA-214ENST00000636238 FLAD1Q8NFF5 587 aa10.46□□□□□ -0.73
CIITA-214ENST00000636238 ANKRD24Q8TF21 1146 aa10.46□□□□□ -0.73
CIITA-214ENST00000636238 CD2APQ9Y5K6 639 aa10.46□□□□□ -0.73
CIITA-214ENST00000636238 CEP350Q5VT06 3117 aa10.46□□□□□ -0.74
CIITA-214ENST00000636238 COL24A1Q17RW2 1714 aa10.45□□□□□ -0.74
CIITA-214ENST00000636238 USP54Q70EL1 1684 aa10.45□□□□□ -0.74
CIITA-214ENST00000636238 CGNL1Q0VF96 1302 aa10.45□□□□□ -0.74
CIITA-214ENST00000636238 QSER1Q2KHR3 1735 aa10.44□□□□□ -0.74
CIITA-214ENST00000636238 EDC4Q6P2E9 1401 aaKnown RBP10.44□□□□□ -0.74
CIITA-214ENST00000636238 SOX12O15370 315 aa10.44□□□□□ -0.74
CIITA-214ENST00000636238 HDGFL2Q7Z4V5 671 aaPredicted RBP10.44□□□□□ -0.74
CIITA-214ENST00000636238 IP6K1Q92551 441 aa10.44□□□□□ -0.74
CIITA-214ENST00000636238 ADCY9O60503 1353 aa10.43□□□□□ -0.74
CIITA-214ENST00000636238 ROCK2O75116 1388 aaKnown RBP10.43□□□□□ -0.74
CIITA-214ENST00000636238 HSPA6P17066 643 aa10.43□□□□□ -0.74
CIITA-214ENST00000636238 GPBP1L1Q9HC44 474 aaPredicted RBP10.43□□□□□ -0.74
CIITA-214ENST00000636238 TERF2IPQ9NYB0 399 aa10.43□□□□□ -0.74
CIITA-214ENST00000636238 SHANK3Q9BYB0 1731 aa10.43□□□□□ -0.74
CIITA-214ENST00000636238 ATP10DQ9P241 1426 aa10.42□□□□□ -0.74
CIITA-214ENST00000636238 SLC24A1O60721 1099 aa10.42□□□□□ -0.74
CIITA-214ENST00000636238 PELP1Q8IZL8 1130 aaKnown RBP10.42□□□□□ -0.74
CIITA-214ENST00000636238 KLHL34Q8N239 644 aa10.42□□□□□ -0.74
CIITA-214ENST00000636238 NLGN2Q8NFZ4 835 aa10.42□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms