RNA–Protein interactions for RNA: ENST00000617617.4

PDPN-211, Transcript of podoplanin, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene PDPN, Length 2,808 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDPN-211ENST00000617617 COL14A1Q05707 1796 aaKnown RBP15.62■□□□□ 0.09
PDPN-211ENST00000617617 HOXC9P31274 260 aa15.62■□□□□ 0.09
PDPN-211ENST00000617617 KDRP35968 1356 aa15.61■□□□□ 0.09
PDPN-211ENST00000617617 FCHSD2O94868 740 aa15.61■□□□□ 0.09
PDPN-211ENST00000617617 HNRNPUQ00839 825 aaKnown RBP eCLIP15.61■□□□□ 0.09
PDPN-211ENST00000617617 XPCQ01831 940 aaPredicted RBP15.61■□□□□ 0.09
PDPN-211ENST00000617617 PLEKHF1Q96S99 279 aa15.61■□□□□ 0.09
PDPN-211ENST00000617617 RUNDC1Q96C34 613 aa15.61■□□□□ 0.09
PDPN-211ENST00000617617 FBLN1P23142 703 aa15.6■□□□□ 0.09
PDPN-211ENST00000617617 DDX17Q92841 729 aaKnown RBP15.6■□□□□ 0.09
PDPN-211ENST00000617617 YTHDC1Q96MU7 727 aaKnown RBP15.6■□□□□ 0.09
PDPN-211ENST00000617617 EIF4A2Q14240 407 aaKnown RBP15.59■□□□□ 0.09
PDPN-211ENST00000617617 CERKQ8TCT0 537 aa15.59■□□□□ 0.09
PDPN-211ENST00000617617 IGSF1Q8N6C5 1336 aa15.58■□□□□ 0.09
PDPN-211ENST00000617617 ZNF521Q96K83 1311 aa15.58■□□□□ 0.09
PDPN-211ENST00000617617 CCDC27Q2M243 656 aa15.58■□□□□ 0.08
PDPN-211ENST00000617617 LRRC59Q96AG4 307 aaKnown RBP15.58■□□□□ 0.08
PDPN-211ENST00000617617 RSPH6AQ9H0K4 717 aa15.58■□□□□ 0.08
PDPN-211ENST00000617617 NUTM2GQ5VZR2 741 aa15.58■□□□□ 0.08
PDPN-211ENST00000617617 PHF23Q9BUL5 403 aaPredicted RBP15.58■□□□□ 0.08
PDPN-211ENST00000617617 AMPHP49418 695 aa15.57■□□□□ 0.08
PDPN-211ENST00000617617 PDE3BQ13370 1112 aa15.57■□□□□ 0.08
PDPN-211ENST00000617617 NWD2Q9ULI1 1742 aa15.57■□□□□ 0.08
PDPN-211ENST00000617617 HSP90AB2PQ58FF8 381 aa15.57■□□□□ 0.08
PDPN-211ENST00000617617 U2AF1L5P0DN76 240 aaPredicted RBP15.56■□□□□ 0.08
PDPN-211ENST00000617617 U2AF1Q01081 240 aaKnown RBP eCLIP15.56■□□□□ 0.08
PDPN-211ENST00000617617 PLCH1Q4KWH8 1693 aa15.55■□□□□ 0.08
PDPN-211ENST00000617617 VIRMAQ69YN4 1812 aaKnown RBP15.55■□□□□ 0.08
PDPN-211ENST00000617617 WNK3Q9BYP7 1800 aa15.55■□□□□ 0.08
PDPN-211ENST00000617617 NRAPQ86VF7 1730 aa15.55■□□□□ 0.08
PDPN-211ENST00000617617 PPM1GO15355 546 aaPredicted RBP15.54■□□□□ 0.08
PDPN-211ENST00000617617 PKD1L3Q7Z443 1732 aa15.54■□□□□ 0.08
PDPN-211ENST00000617617 PARP4Q9UKK3 1724 aaKnown RBP15.53■□□□□ 0.08
PDPN-211ENST00000617617 LRRC37A3O60309 1634 aa15.53■□□□□ 0.08
PDPN-211ENST00000617617 ADAMTS7Q9UKP4 1686 aa15.52■□□□□ 0.08
PDPN-211ENST00000617617 U2SURPO15042 1029 aaKnown RBP15.52■□□□□ 0.08
PDPN-211ENST00000617617 LMOD2Q6P5Q4 547 aa15.51■□□□□ 0.07
PDPN-211ENST00000617617 KIAA0232Q92628 1395 aa15.51■□□□□ 0.07
PDPN-211ENST00000617617 UBAP1LF5GYI3 381 aa15.5■□□□□ 0.07
PDPN-211ENST00000617617 TNKS1BP1Q9C0C2 1729 aaKnown RBP15.5■□□□□ 0.07
PDPN-211ENST00000617617 TCP11L2Q8N4U5 519 aa15.5■□□□□ 0.07
PDPN-211ENST00000617617 EYA1Q99502 592 aa15.5■□□□□ 0.07
PDPN-211ENST00000617617 COL5A2P05997 1499 aaPredicted RBP15.5■□□□□ 0.07
PDPN-211ENST00000617617 APAF1O14727 1248 aa15.49■□□□□ 0.07
PDPN-211ENST00000617617 CCDC146Q8IYE0 955 aa15.49■□□□□ 0.07
PDPN-211ENST00000617617 ERBB3P21860 1342 aa15.49■□□□□ 0.07
PDPN-211ENST00000617617 SOX12O15370 315 aa15.49■□□□□ 0.07
PDPN-211ENST00000617617 MAPK8IP3Q9UPT6 1336 aa15.48■□□□□ 0.07
PDPN-211ENST00000617617 PRKAR2BP31323 418 aa15.48■□□□□ 0.07
PDPN-211ENST00000617617 TMPOP42166 694 aaKnown RBP15.48■□□□□ 0.07
PDPN-211ENST00000617617 WDR63Q8IWG1 891 aa15.48■□□□□ 0.07
PDPN-211ENST00000617617 TRMT2AQ8IZ69 625 aaKnown RBP15.48■□□□□ 0.07
PDPN-211ENST00000617617 IL16Q14005 1332 aa15.47■□□□□ 0.07
PDPN-211ENST00000617617 NFE2L2Q16236 605 aa15.47■□□□□ 0.07
PDPN-211ENST00000617617 AXIN2Q9Y2T1 843 aa15.47■□□□□ 0.07
PDPN-211ENST00000617617 SULT6B1Q6IMI4 303 aa15.46■□□□□ 0.07
PDPN-211ENST00000617617 ANKRD24Q8TF21 1146 aa15.46■□□□□ 0.07
PDPN-211ENST00000617617 JCADQ9P266 1359 aa15.46■□□□□ 0.07
PDPN-211ENST00000617617 SHANK3Q9BYB0 1731 aa15.46■□□□□ 0.07
PDPN-211ENST00000617617 NEFMP07197 916 aa15.46■□□□□ 0.07
PDPN-211ENST00000617617 WWC1Q8IX03 1113 aa15.46■□□□□ 0.07
PDPN-211ENST00000617617 CABLES1Q8TDN4 633 aa15.46■□□□□ 0.07
PDPN-211ENST00000617617 SIPA1L3O60292 1781 aaPredicted RBP15.45■□□□□ 0.06
PDPN-211ENST00000617617 ZC3H6P61129 1189 aaKnown RBP15.44■□□□□ 0.06
PDPN-211ENST00000617617 OVOS2A0A0G2JMS6 1433 aa15.44■□□□□ 0.06
PDPN-211ENST00000617617 SCN11AQ9UI33 1791 aa15.44■□□□□ 0.06
PDPN-211ENST00000617617 HMOX1P09601 288 aa15.44■□□□□ 0.06
PDPN-211ENST00000617617 TRIM35Q9UPQ4 493 aa15.44■□□□□ 0.06
PDPN-211ENST00000617617 LMOD3Q0VAK6 560 aa15.44■□□□□ 0.06
PDPN-211ENST00000617617 NBPF6Q5VWK0 638 aa15.44■□□□□ 0.06
PDPN-211ENST00000617617 AEBP1Q8IUX7 1158 aa15.44■□□□□ 0.06
PDPN-211ENST00000617617 PHACTR3Q96KR7 559 aa15.44■□□□□ 0.06
PDPN-211ENST00000617617 NBPF4Q96M43 638 aa15.44■□□□□ 0.06
PDPN-211ENST00000617617 HTATSF1O43719 755 aaKnown RBP15.43■□□□□ 0.06
PDPN-211ENST00000617617 GOLGA2Q08379 1002 aa15.43■□□□□ 0.06
PDPN-211ENST00000617617 WDR17Q8IZU2 1322 aa15.43■□□□□ 0.06
PDPN-211ENST00000617617 SLFN5Q08AF3 891 aa15.43■□□□□ 0.06
PDPN-211ENST00000617617 SPATA31A6Q5VVP1 1343 aa15.42■□□□□ 0.06
PDPN-211ENST00000617617 E9PSI1 815 aa15.42■□□□□ 0.06
PDPN-211ENST00000617617 SLIT2O94813 1529 aa15.41■□□□□ 0.06
PDPN-211ENST00000617617 PIP4K2BP78356 416 aa15.41■□□□□ 0.06
PDPN-211ENST00000617617 GAS2L2Q8NHY3 880 aa15.41■□□□□ 0.06
PDPN-211ENST00000617617 PRDM11Q9NQV5 511 aa15.41■□□□□ 0.06
PDPN-211ENST00000617617 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP15.4■□□□□ 0.06
PDPN-211ENST00000617617 FAM83GA6ND36 823 aa15.4■□□□□ 0.06
PDPN-211ENST00000617617 CALD1Q05682 793 aaKnown RBP15.4■□□□□ 0.06
PDPN-211ENST00000617617 CRB1P82279 1406 aa15.4■□□□□ 0.06
PDPN-211ENST00000617617 RIPK4P57078 832 aa15.39■□□□□ 0.06
PDPN-211ENST00000617617 KDM3BQ7LBC6 1761 aa15.39■□□□□ 0.05
PDPN-211ENST00000617617 AMOTQ4VCS5 1084 aa15.39■□□□□ 0.05
PDPN-211ENST00000617617 DUSP27Q5VZP5 1158 aa15.39■□□□□ 0.05
PDPN-211ENST00000617617 CARD10Q9BWT7 1032 aa15.39■□□□□ 0.05
PDPN-211ENST00000617617 HAP1P54257 671 aaPredicted RBP15.38■□□□□ 0.05
PDPN-211ENST00000617617 MEGF6O75095 1541 aa15.37■□□□□ 0.05
PDPN-211ENST00000617617 CHRNA2Q15822 529 aa15.37■□□□□ 0.05
PDPN-211ENST00000617617 LTV1Q96GA3 475 aaPredicted RBP15.37■□□□□ 0.05
PDPN-211ENST00000617617 MAP3K5Q99683 1374 aa15.37■□□□□ 0.05
PDPN-211ENST00000617617 DISP2A7MBM2 1401 aa15.37■□□□□ 0.05
PDPN-211ENST00000617617 MTHFSDQ2M296 383 aaKnown RBP15.36■□□□□ 0.05
PDPN-211ENST00000617617 RNF123Q5XPI4 1314 aa15.36■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms