RNA–Protein interactions for RNA: ENST00000617339.4

SHROOM1-208, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHROOM1, Length 3,638 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-208ENST00000617339 ABTB2Q8N961 1025 aa18.22■□□□□ 0.51
SHROOM1-208ENST00000617339 EIF4A2Q14240 407 aaKnown RBP18.22■□□□□ 0.51
SHROOM1-208ENST00000617339 TWISTNBQ3B726 338 aaPredicted RBP18.22■□□□□ 0.51
SHROOM1-208ENST00000617339 SETBP1Q9Y6X0 1596 aa18.22■□□□□ 0.51
SHROOM1-208ENST00000617339 IL13P35225 146 aa18.22■□□□□ 0.51
SHROOM1-208ENST00000617339 GLIPR1L2Q4G1C9 344 aa18.22■□□□□ 0.51
SHROOM1-208ENST00000617339 TTC21BQ7Z4L5 1316 aa18.22■□□□□ 0.51
SHROOM1-208ENST00000617339 ESCO1Q5FWF5 840 aa18.21■□□□□ 0.51
SHROOM1-208ENST00000617339 PPP6R1Q9UPN7 881 aa18.21■□□□□ 0.51
SHROOM1-208ENST00000617339 KIAA1210Q9ULL0 1709 aa18.21■□□□□ 0.51
SHROOM1-208ENST00000617339 PUS7Q96PZ0 661 aaKnown RBP18.21■□□□□ 0.5
SHROOM1-208ENST00000617339 TMEM2Q9UHN6 1383 aa18.2■□□□□ 0.5
SHROOM1-208ENST00000617339 PREX1Q8TCU6 1659 aa18.2■□□□□ 0.5
SHROOM1-208ENST00000617339 TMEM131LA2VDJ0 1609 aa18.2■□□□□ 0.5
SHROOM1-208ENST00000617339 NSD2O96028 1365 aa18.2■□□□□ 0.5
SHROOM1-208ENST00000617339 PSME1Q06323 249 aa18.2■□□□□ 0.5
SHROOM1-208ENST00000617339 ANKRD45Q5TZF3 282 aa18.2■□□□□ 0.5
SHROOM1-208ENST00000617339 IFT172Q9UG01 1749 aa18.19■□□□□ 0.5
SHROOM1-208ENST00000617339 CCDC27Q2M243 656 aa18.18■□□□□ 0.5
SHROOM1-208ENST00000617339 PHF23Q9BUL5 403 aaPredicted RBP18.18■□□□□ 0.5
SHROOM1-208ENST00000617339 CD163L1Q9NR16 1453 aa18.18■□□□□ 0.5
SHROOM1-208ENST00000617339 IPO8O15397 1037 aaKnown RBP18.18■□□□□ 0.5
SHROOM1-208ENST00000617339 ZNF692Q9BU19 519 aaPredicted RBP18.17■□□□□ 0.5
SHROOM1-208ENST00000617339 RTF1Q92541 710 aaKnown RBP18.17■□□□□ 0.5
SHROOM1-208ENST00000617339 PANK2Q9BZ23 570 aa18.17■□□□□ 0.5
SHROOM1-208ENST00000617339 ZMYND15Q9H091 742 aa18.16■□□□□ 0.5
SHROOM1-208ENST00000617339 ARHGEF28Q8N1W1 1705 aaKnown RBP18.16■□□□□ 0.5
SHROOM1-208ENST00000617339 ZFYVE9O95405 1425 aa18.16■□□□□ 0.5
SHROOM1-208ENST00000617339 ARHGEF40Q8TER5 1519 aa18.16■□□□□ 0.5
SHROOM1-208ENST00000617339 CSB-PGBD3P0DP91 1061 aa18.16■□□□□ 0.5
SHROOM1-208ENST00000617339 DDX19BQ9UMR2 479 aa18.16■□□□□ 0.5
SHROOM1-208ENST00000617339 GNAI1P63096 354 aa18.15■□□□□ 0.5
SHROOM1-208ENST00000617339 PROSER2Q86WR7 435 aaPredicted RBP18.15■□□□□ 0.5
SHROOM1-208ENST00000617339 ANKLE2Q86XL3 938 aa18.15■□□□□ 0.5
SHROOM1-208ENST00000617339 VAMP4O75379 141 aa18.15■□□□□ 0.5
SHROOM1-208ENST00000617339 BECN1Q14457 450 aa18.15■□□□□ 0.5
SHROOM1-208ENST00000617339 HSP90AA2PQ14568 343 aaPredicted RBP18.15■□□□□ 0.5
SHROOM1-208ENST00000617339 L1TD1Q5T7N2 865 aaKnown RBP18.15■□□□□ 0.5
SHROOM1-208ENST00000617339 F6X3S4 739 aa18.14■□□□□ 0.49
SHROOM1-208ENST00000617339 UPF2Q9HAU5 1272 aaKnown RBP18.14■□□□□ 0.49
SHROOM1-208ENST00000617339 HSPA2P54652 639 aa18.14■□□□□ 0.49
SHROOM1-208ENST00000617339 MAP3K19Q56UN5 1328 aa18.13■□□□□ 0.49
SHROOM1-208ENST00000617339 ZC3H13Q5T200 1668 aaKnown RBP18.13■□□□□ 0.49
SHROOM1-208ENST00000617339 HSP90AA1P07900 732 aaKnown RBP18.13■□□□□ 0.49
SHROOM1-208ENST00000617339 NINLQ9Y2I6 1382 aa18.12■□□□□ 0.49
SHROOM1-208ENST00000617339 FOXD4L1Q9NU39 408 aa18.12■□□□□ 0.49
SHROOM1-208ENST00000617339 TSPYL4Q9UJ04 414 aa18.11■□□□□ 0.49
SHROOM1-208ENST00000617339 SLC4A2P04920 1241 aa18.11■□□□□ 0.49
SHROOM1-208ENST00000617339 EIF2S2P20042 333 aaKnown RBP18.11■□□□□ 0.49
SHROOM1-208ENST00000617339 GOLGA6L3A6NEY3 463 aa18.11■□□□□ 0.49
SHROOM1-208ENST00000617339 XRCC6P12956 609 aaKnown RBP eCLIP18.1■□□□□ 0.49
SHROOM1-208ENST00000617339 MTHFSDQ2M296 383 aaKnown RBP18.1■□□□□ 0.49
SHROOM1-208ENST00000617339 CPS1P31327 1500 aa18.1■□□□□ 0.49
SHROOM1-208ENST00000617339 DDX17Q92841 729 aaKnown RBP18.09■□□□□ 0.49
SHROOM1-208ENST00000617339 EYA1Q99502 592 aa18.09■□□□□ 0.49
SHROOM1-208ENST00000617339 KIF16BQ96L93 1317 aa18.08■□□□□ 0.49
SHROOM1-208ENST00000617339 CFAP44Q96MT7 982 aa18.07■□□□□ 0.48
SHROOM1-208ENST00000617339 NEURL4Q96JN8 1562 aa18.07■□□□□ 0.48
SHROOM1-208ENST00000617339 CALD1Q05682 793 aaKnown RBP18.06■□□□□ 0.48
SHROOM1-208ENST00000617339 MRPL50Q8N5N7 158 aaKnown RBP18.06■□□□□ 0.48
SHROOM1-208ENST00000617339 ORAI2Q96SN7 254 aa18.06■□□□□ 0.48
SHROOM1-208ENST00000617339 EDC4Q6P2E9 1401 aaKnown RBP18.06■□□□□ 0.48
SHROOM1-208ENST00000617339 USP19O94966 1318 aa18.06■□□□□ 0.48
SHROOM1-208ENST00000617339 MYO3AQ8NEV4 1616 aa18.06■□□□□ 0.48
SHROOM1-208ENST00000617339 SMARCA5O60264 1052 aaPredicted RBP18.06■□□□□ 0.48
SHROOM1-208ENST00000617339 LRRC59Q96AG4 307 aaKnown RBP18.06■□□□□ 0.48
SHROOM1-208ENST00000617339 G2E3Q7L622 706 aa18.05■□□□□ 0.48
SHROOM1-208ENST00000617339 C16orf71Q8IYS4 520 aaPredicted RBP18.05■□□□□ 0.48
SHROOM1-208ENST00000617339 ZBTB40Q9NUA8 1239 aa18.05■□□□□ 0.48
SHROOM1-208ENST00000617339 ANXA1P04083 346 aa18.05■□□□□ 0.48
SHROOM1-208ENST00000617339 ZC3H6P61129 1189 aaKnown RBP18.04■□□□□ 0.48
SHROOM1-208ENST00000617339 LMOD3Q0VAK6 560 aa18.04■□□□□ 0.48
SHROOM1-208ENST00000617339 SETD1BQ9UPS6 1966 aaKnown RBP18.04■□□□□ 0.48
SHROOM1-208ENST00000617339 IFT57Q9NWB7 429 aa18.04■□□□□ 0.48
SHROOM1-208ENST00000617339 NLRP1Q9C000 1473 aa18.04■□□□□ 0.48
SHROOM1-208ENST00000617339 SHPRHQ149N8 1683 aa18.04■□□□□ 0.48
SHROOM1-208ENST00000617339 IQSEC2Q5JU85 1478 aa18.03■□□□□ 0.48
SHROOM1-208ENST00000617339 PTPRUQ92729 1446 aa18.03■□□□□ 0.48
SHROOM1-208ENST00000617339 ZNF330Q9Y3S2 320 aaPredicted RBP18.02■□□□□ 0.48
SHROOM1-208ENST00000617339 ADAMTS13Q76LX8 1427 aa18.02■□□□□ 0.48
SHROOM1-208ENST00000617339 PNPLA6Q8IY17 1366 aa18.02■□□□□ 0.48
SHROOM1-208ENST00000617339 ATF3P18847 181 aa18.02■□□□□ 0.48
SHROOM1-208ENST00000617339 PHF8Q9UPP1 1060 aa18.02■□□□□ 0.47
SHROOM1-208ENST00000617339 TBX22Q9Y458 520 aa18.02■□□□□ 0.47
SHROOM1-208ENST00000617339 FKBP5Q13451 457 aaPredicted RBP18.01■□□□□ 0.47
SHROOM1-208ENST00000617339 TSHZ3Q63HK5 1081 aa18.01■□□□□ 0.47
SHROOM1-208ENST00000617339 ZBTB7BO15156 539 aaPredicted RBP18■□□□□ 0.47
SHROOM1-208ENST00000617339 TBC1D2Q9BYX2 928 aa18■□□□□ 0.47
SHROOM1-208ENST00000617339 PLEKHG3A1L390 1219 aa18■□□□□ 0.47
SHROOM1-208ENST00000617339 CPSF1Q10570 1443 aaKnown RBP18■□□□□ 0.47
SHROOM1-208ENST00000617339 MEIS3Q99687 375 aa18■□□□□ 0.47
SHROOM1-208ENST00000617339 LRRC7Q96NW7 1537 aa18■□□□□ 0.47
SHROOM1-208ENST00000617339 CHD1LQ86WJ1 897 aa17.99■□□□□ 0.47
SHROOM1-208ENST00000617339 OTUD7AQ8TE49 926 aaPredicted RBP17.99■□□□□ 0.47
SHROOM1-208ENST00000617339 IL16Q14005 1332 aa17.99■□□□□ 0.47
SHROOM1-208ENST00000617339 MPRIPQ6WCQ1 1025 aa17.98■□□□□ 0.47
SHROOM1-208ENST00000617339 CABLES1Q8TDN4 633 aa17.98■□□□□ 0.47
SHROOM1-208ENST00000617339 CT47B1P0C2W7 299 aaPredicted RBP17.98■□□□□ 0.47
SHROOM1-208ENST00000617339 ALDH1L2Q3SY69 923 aa17.98■□□□□ 0.47
SHROOM1-208ENST00000617339 COL3A1P02461 1466 aaPredicted RBP17.97■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms