RNA–Protein interactions for RNA: ENST00000596549.5

LIG1-212, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 580 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-212ENST00000596549 BARGINQ6ZT62 677 aa18.45■□□□□ 0.54
LIG1-212ENST00000596549 DEFB132Q7Z7B7 95 aa18.45■□□□□ 0.54
LIG1-212ENST00000596549 PUS7Q96PZ0 661 aaKnown RBP18.45■□□□□ 0.54
LIG1-212ENST00000596549 FAM208AQ9UK61 1670 aaKnown RBP18.44■□□□□ 0.54
LIG1-212ENST00000596549 EVA1CP58658 441 aa18.44■□□□□ 0.54
LIG1-212ENST00000596549 NME9Q86XW9 330 aa18.44■□□□□ 0.54
LIG1-212ENST00000596549 SUGP2Q8IX01 1082 aaKnown RBP eCLIP18.44■□□□□ 0.54
LIG1-212ENST00000596549 TMC1Q8TDI8 760 aa18.44■□□□□ 0.54
LIG1-212ENST00000596549 PCGF6Q9BYE7 350 aa18.44■□□□□ 0.54
LIG1-212ENST00000596549 SOX12O15370 315 aa18.43■□□□□ 0.54
LIG1-212ENST00000596549 ARHGEF25Q86VW2 580 aa18.43■□□□□ 0.54
LIG1-212ENST00000596549 AXIN2Q9Y2T1 843 aa18.43■□□□□ 0.54
LIG1-212ENST00000596549 NUP188Q5SRE5 1749 aa18.43■□□□□ 0.54
LIG1-212ENST00000596549 DISP2A7MBM2 1401 aa18.42■□□□□ 0.54
LIG1-212ENST00000596549 TCP11L2Q8N4U5 519 aa18.42■□□□□ 0.54
LIG1-212ENST00000596549 KCNH5Q8NCM2 988 aa18.42■□□□□ 0.54
LIG1-212ENST00000596549 HDGFL2Q7Z4V5 671 aaPredicted RBP18.41■□□□□ 0.54
LIG1-212ENST00000596549 WDR17Q8IZU2 1322 aa18.41■□□□□ 0.54
LIG1-212ENST00000596549 RGPD3A6NKT7 1758 aaPredicted RBP18.4■□□□□ 0.54
LIG1-212ENST00000596549 RGPD2P0DJD1 1756 aa18.4■□□□□ 0.54
LIG1-212ENST00000596549 RGPD4Q7Z3J3 1758 aa18.4■□□□□ 0.54
LIG1-212ENST00000596549 THRAP3Q9Y2W1 955 aaKnown RBP18.4■□□□□ 0.54
LIG1-212ENST00000596549 ANKRD36BQ8N2N9 1353 aa18.4■□□□□ 0.54
LIG1-212ENST00000596549 SF3B2Q13435 895 aaKnown RBP18.38■□□□□ 0.53
LIG1-212ENST00000596549 TERF2IPQ9NYB0 399 aa18.38■□□□□ 0.53
LIG1-212ENST00000596549 TIMELESSQ9UNS1 1208 aa18.38■□□□□ 0.53
LIG1-212ENST00000596549 LRP5O75197 1615 aa18.35■□□□□ 0.53
LIG1-212ENST00000596549 OVOS2A0A0G2JMS6 1433 aa18.35■□□□□ 0.53
LIG1-212ENST00000596549 TMF1P82094 1093 aa18.35■□□□□ 0.53
LIG1-212ENST00000596549 TOM1L2Q6ZVM7 507 aa18.35■□□□□ 0.53
LIG1-212ENST00000596549 SHANK3Q9BYB0 1731 aa18.35■□□□□ 0.53
LIG1-212ENST00000596549 ANKRD26Q9UPS8 1709 aa18.35■□□□□ 0.53
LIG1-212ENST00000596549 ERBB3P21860 1342 aa18.34■□□□□ 0.53
LIG1-212ENST00000596549 BAG6P46379 1132 aa18.34■□□□□ 0.53
LIG1-212ENST00000596549 TNS2Q63HR2 1409 aa18.33■□□□□ 0.53
LIG1-212ENST00000596549 SLC24A1O60721 1099 aa18.33■□□□□ 0.52
LIG1-212ENST00000596549 FAM196AQ6ZSG2 479 aa18.33■□□□□ 0.52
LIG1-212ENST00000596549 NHSQ6T4R5 1651 aa18.33■□□□□ 0.52
LIG1-212ENST00000596549 TRIM37O94972 964 aa18.32■□□□□ 0.52
LIG1-212ENST00000596549 EN1Q05925 392 aaPredicted RBP18.32■□□□□ 0.52
LIG1-212ENST00000596549 PDE3BQ13370 1112 aa18.32■□□□□ 0.52
LIG1-212ENST00000596549 CCDC7Q96M83 1385 aa18.31■□□□□ 0.52
LIG1-212ENST00000596549 CARD10Q9BWT7 1032 aa18.31■□□□□ 0.52
LIG1-212ENST00000596549 CSB-PGBD3P0DP91 1061 aa18.29■□□□□ 0.52
LIG1-212ENST00000596549 EZH2Q15910 746 aaKnown RBP18.28■□□□□ 0.52
LIG1-212ENST00000596549 DDB1Q16531 1140 aa18.28■□□□□ 0.52
LIG1-212ENST00000596549 CCER1Q8TC90 406 aaPredicted RBP18.28■□□□□ 0.52
LIG1-212ENST00000596549 BCL9O00512 1426 aa18.27■□□□□ 0.52
LIG1-212ENST00000596549 MAP3K19Q56UN5 1328 aa18.26■□□□□ 0.51
LIG1-212ENST00000596549 NSD3Q9BZ95 1437 aa18.26■□□□□ 0.51
LIG1-212ENST00000596549 CAMKK2Q96RR4 588 aa18.26■□□□□ 0.51
LIG1-212ENST00000596549 PARD3Q8TEW0 1356 aa18.26■□□□□ 0.51
LIG1-212ENST00000596549 DOT1LQ8TEK3 1739 aa18.26■□□□□ 0.51
LIG1-212ENST00000596549 BTAF1O14981 1849 aa18.26■□□□□ 0.51
LIG1-212ENST00000596549 FBLN1P23142 703 aa18.25■□□□□ 0.51
LIG1-212ENST00000596549 ANKRD24Q8TF21 1146 aa18.25■□□□□ 0.51
LIG1-212ENST00000596549 COG3Q96JB2 828 aa18.25■□□□□ 0.51
LIG1-212ENST00000596549 RTL1A6NKG5 1358 aa18.25■□□□□ 0.51
LIG1-212ENST00000596549 FYB1O15117 783 aa18.24■□□□□ 0.51
LIG1-212ENST00000596549 CDCA8Q53HL2 280 aa18.24■□□□□ 0.51
LIG1-212ENST00000596549 MARCH10Q8NA82 808 aaPredicted RBP18.24■□□□□ 0.51
LIG1-212ENST00000596549 CDCA7Q9BWT1 371 aaPredicted RBP18.24■□□□□ 0.51
LIG1-212ENST00000596549 GGNBP2Q9H3C7 697 aa18.24■□□□□ 0.51
LIG1-212ENST00000596549 MAP2P11137 1827 aaKnown RBP18.23■□□□□ 0.51
LIG1-212ENST00000596549 APBA3O96018 575 aa18.23■□□□□ 0.51
LIG1-212ENST00000596549 IP6K1Q92551 441 aa18.23■□□□□ 0.51
LIG1-212ENST00000596549 SRCAPQ6ZRS2 3230 aa18.22■□□□□ 0.51
LIG1-212ENST00000596549 PSDA5PKW4 1024 aaPredicted RBP18.22■□□□□ 0.51
LIG1-212ENST00000596549 HOXC9P31274 260 aa18.22■□□□□ 0.51
LIG1-212ENST00000596549 CARD14Q9BXL6 1004 aa18.22■□□□□ 0.51
LIG1-212ENST00000596549 PTF1AQ7RTS3 328 aa18.21■□□□□ 0.51
LIG1-212ENST00000596549 NLRP2Q9NX02 1062 aa18.21■□□□□ 0.51
LIG1-212ENST00000596549 CASZ1Q86V15 1759 aa18.21■□□□□ 0.51
LIG1-212ENST00000596549 MEGF6O75095 1541 aa18.2■□□□□ 0.5
LIG1-212ENST00000596549 PAPPAQ13219 1627 aa18.2■□□□□ 0.5
LIG1-212ENST00000596549 C11orf95C9JLR9 678 aaPredicted RBP18.19■□□□□ 0.5
LIG1-212ENST00000596549 HSPA5P11021 654 aaKnown RBP18.19■□□□□ 0.5
LIG1-212ENST00000596549 RRS1Q15050 365 aaKnown RBP18.19■□□□□ 0.5
LIG1-212ENST00000596549 PKD1L3Q7Z443 1732 aa18.18■□□□□ 0.5
LIG1-212ENST00000596549 IL2RBP14784 551 aa18.18■□□□□ 0.5
LIG1-212ENST00000596549 R3HDM1Q15032 1099 aaKnown RBP18.17■□□□□ 0.5
LIG1-212ENST00000596549 LTV1Q96GA3 475 aaPredicted RBP18.17■□□□□ 0.5
LIG1-212ENST00000596549 EXOC5O00471 708 aa18.16■□□□□ 0.5
LIG1-212ENST00000596549 EIF4G2P78344 907 aaKnown RBP eCLIP18.16■□□□□ 0.51e-11■■■■■ 55.3
LIG1-212ENST00000596549 TOGARAM1Q9Y4F4 1720 aa18.15■□□□□ 0.5
LIG1-212ENST00000596549 AMPHP49418 695 aa18.15■□□□□ 0.5
LIG1-212ENST00000596549 BCL11BQ9C0K0 894 aaPredicted RBP18.15■□□□□ 0.5
LIG1-212ENST00000596549 FLT4P35916 1363 aa18.15■□□□□ 0.5
LIG1-212ENST00000596549 LY75O60449 1722 aa18.15■□□□□ 0.5
LIG1-212ENST00000596549 INSRP06213 1382 aa18.14■□□□□ 0.49
LIG1-212ENST00000596549 KIF24Q5T7B8 1368 aa18.14■□□□□ 0.49
LIG1-212ENST00000596549 NCAPD2Q15021 1401 aa18.13■□□□□ 0.49
LIG1-212ENST00000596549 SMG6Q86US8 1419 aaKnown RBP18.13■□□□□ 0.49
LIG1-212ENST00000596549 TUBGCP6Q96RT7 1819 aa18.12■□□□□ 0.49
LIG1-212ENST00000596549 PLSCR1O15162 318 aa18.12■□□□□ 0.49
LIG1-212ENST00000596549 KCNQ2O43526 872 aa18.11■□□□□ 0.49
LIG1-212ENST00000596549 POLR3GLQ9BT43 218 aa18.11■□□□□ 0.49
LIG1-212ENST00000596549 QSER1Q2KHR3 1735 aa18.1■□□□□ 0.49
LIG1-212ENST00000596549 ANO8Q9HCE9 1232 aaPredicted RBP18.1■□□□□ 0.49
LIG1-212ENST00000596549 EMILIN1Q9Y6C2 1016 aa18.1■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 6.5 ms