RNA–Protein interactions for RNA: ENST00000594504.5

UPF1-203, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 559 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-203ENST00000594504 WDR17Q8IZU2 1322 aa17.74■□□□□ 0.43
UPF1-203ENST00000594504 TTC21AQ8NDW8 1320 aa17.74■□□□□ 0.43
UPF1-203ENST00000594504 CSB-PGBD3P0DP91 1061 aa17.74■□□□□ 0.43
UPF1-203ENST00000594504 TMC1Q8TDI8 760 aa17.73■□□□□ 0.43
UPF1-203ENST00000594504 RREB1Q92766 1687 aa17.73■□□□□ 0.43
UPF1-203ENST00000594504 CLSPNQ9HAW4 1339 aa17.72■□□□□ 0.43
UPF1-203ENST00000594504 LRRC37A3O60309 1634 aa17.72■□□□□ 0.43
UPF1-203ENST00000594504 NUP188Q5SRE5 1749 aa17.72■□□□□ 0.43
UPF1-203ENST00000594504 PEAK1Q9H792 1746 aa17.72■□□□□ 0.43
UPF1-203ENST00000594504 PARD3Q8TEW0 1356 aa17.72■□□□□ 0.43
UPF1-203ENST00000594504 NME9Q86XW9 330 aa17.72■□□□□ 0.43
UPF1-203ENST00000594504 MARCH10Q8NA82 808 aaPredicted RBP17.72■□□□□ 0.43
UPF1-203ENST00000594504 SLC12A5Q9H2X9 1139 aa17.72■□□□□ 0.43
UPF1-203ENST00000594504 SRCAPQ6ZRS2 3230 aa17.72■□□□□ 0.43
UPF1-203ENST00000594504 SBF2Q86WG5 1849 aa17.71■□□□□ 0.43
UPF1-203ENST00000594504 NBPF14Q5TI25 921 aa17.71■□□□□ 0.43
UPF1-203ENST00000594504 TONSLQ96HA7 1378 aa17.7■□□□□ 0.42
UPF1-203ENST00000594504 CARD10Q9BWT7 1032 aa17.7■□□□□ 0.42
UPF1-203ENST00000594504 OVOS2A0A0G2JMS6 1433 aa17.7■□□□□ 0.42
UPF1-203ENST00000594504 OVOS2A0A0J9YW53 1432 aa17.7■□□□□ 0.42
UPF1-203ENST00000594504 OVOS2Q6IE36 1432 aa17.7■□□□□ 0.42
UPF1-203ENST00000594504 MON2Q7Z3U7 1717 aa17.69■□□□□ 0.42
UPF1-203ENST00000594504 CD163L1Q9NR16 1453 aa17.69■□□□□ 0.42
UPF1-203ENST00000594504 NFAT5O94916 1531 aa17.69■□□□□ 0.42
UPF1-203ENST00000594504 WNK3Q9BYP7 1800 aa17.69■□□□□ 0.42
UPF1-203ENST00000594504 SBNO2Q9Y2G9 1366 aa17.67■□□□□ 0.42
UPF1-203ENST00000594504 C11orf95C9JLR9 678 aaPredicted RBP17.67■□□□□ 0.42
UPF1-203ENST00000594504 EXOC5O00471 708 aa17.67■□□□□ 0.42
UPF1-203ENST00000594504 PLSCR1O15162 318 aa17.67■□□□□ 0.42
UPF1-203ENST00000594504 BCL11BQ9C0K0 894 aaPredicted RBP17.67■□□□□ 0.42
UPF1-203ENST00000594504 USP31Q70CQ4 1352 aa17.66■□□□□ 0.42
UPF1-203ENST00000594504 HDGFL2Q7Z4V5 671 aaPredicted RBP17.66■□□□□ 0.42
UPF1-203ENST00000594504 PROM2Q8N271 834 aa17.66■□□□□ 0.42
UPF1-203ENST00000594504 CDCA7Q9BWT1 371 aaPredicted RBP17.66■□□□□ 0.42
UPF1-203ENST00000594504 CCER1Q8TC90 406 aaPredicted RBP17.65■□□□□ 0.42
UPF1-203ENST00000594504 KCNQ2O43526 872 aa17.63■□□□□ 0.41
UPF1-203ENST00000594504 ANO8Q9HCE9 1232 aaPredicted RBP17.63■□□□□ 0.41
UPF1-203ENST00000594504 NLRP2Q9NX02 1062 aa17.63■□□□□ 0.41
UPF1-203ENST00000594504 LTN1O94822 1766 aa17.62■□□□□ 0.41
UPF1-203ENST00000594504 ST20-MTHFSA0A0A6YYL1 179 aa17.62■□□□□ 0.41
UPF1-203ENST00000594504 PDGFDQ9GZP0 370 aaPredicted RBP17.62■□□□□ 0.41
UPF1-203ENST00000594504 A0A1W2PP64 1363 aa17.62■□□□□ 0.41
UPF1-203ENST00000594504 CCDC7Q96M83 1385 aa17.62■□□□□ 0.41
UPF1-203ENST00000594504 FBLN1P23142 703 aa17.61■□□□□ 0.41
UPF1-203ENST00000594504 ANKRD24Q8TF21 1146 aa17.61■□□□□ 0.41
UPF1-203ENST00000594504 ACSBG1Q96GR2 724 aa17.61■□□□□ 0.41
UPF1-203ENST00000594504 TESK2Q96S53 571 aa17.61■□□□□ 0.41
UPF1-203ENST00000594504 TERF2IPQ9NYB0 399 aa17.61■□□□□ 0.41
UPF1-203ENST00000594504 SPON1Q9HCB6 807 aa17.6■□□□□ 0.41
UPF1-203ENST00000594504 ERBB3P21860 1342 aa17.6■□□□□ 0.41
UPF1-203ENST00000594504 USP54Q70EL1 1684 aa17.6■□□□□ 0.41
UPF1-203ENST00000594504 BCL9O00512 1426 aa17.59■□□□□ 0.41
UPF1-203ENST00000594504 EDC4Q6P2E9 1401 aaKnown RBP17.59■□□□□ 0.41
UPF1-203ENST00000594504 TIMELESSQ9UNS1 1208 aa17.59■□□□□ 0.41
UPF1-203ENST00000594504 IL2RBP14784 551 aa17.58■□□□□ 0.4
UPF1-203ENST00000594504 TXNRD1Q16881 649 aa17.58■□□□□ 0.4
UPF1-203ENST00000594504 LTV1Q96GA3 475 aaPredicted RBP17.58■□□□□ 0.4
UPF1-203ENST00000594504 PUS7Q96PZ0 661 aaKnown RBP17.58■□□□□ 0.4
UPF1-203ENST00000594504 RGPD3A6NKT7 1758 aaPredicted RBP17.58■□□□□ 0.4
UPF1-203ENST00000594504 RGPD4Q7Z3J3 1758 aa17.58■□□□□ 0.4
UPF1-203ENST00000594504 PPP1R1BQ9UD71 204 aaPredicted RBP17.57■□□□□ 0.4
UPF1-203ENST00000594504 ABCC6O95255 1503 aa17.57■□□□□ 0.4
UPF1-203ENST00000594504 TNS2Q63HR2 1409 aa17.56■□□□□ 0.4
UPF1-203ENST00000594504 IP6K1Q92551 441 aa17.55■□□□□ 0.4
UPF1-203ENST00000594504 ZBTB7AO95365 584 aa17.54■□□□□ 0.4
UPF1-203ENST00000594504 ATF5Q9Y2D1 282 aaPredicted RBP17.54■□□□□ 0.4
UPF1-203ENST00000594504 CASZ1Q86V15 1759 aa17.53■□□□□ 0.4
UPF1-203ENST00000594504 SLC15A2Q16348 729 aa17.53■□□□□ 0.4
UPF1-203ENST00000594504 COG3Q96JB2 828 aa17.53■□□□□ 0.4
UPF1-203ENST00000594504 STK32BQ9NY57 414 aa17.53■□□□□ 0.4
UPF1-203ENST00000594504 DDX54Q8TDD1 881 aaKnown RBP17.52■□□□□ 0.4
UPF1-203ENST00000594504 KAT6BQ8WYB5 2073 aa17.52■□□□□ 0.39
UPF1-203ENST00000594504 MAP3K19Q56UN5 1328 aa17.51■□□□□ 0.39
UPF1-203ENST00000594504 NHSQ6T4R5 1651 aa17.51■□□□□ 0.39
UPF1-203ENST00000594504 HOXC9P31274 260 aa17.5■□□□□ 0.39
UPF1-203ENST00000594504 AMPHP49418 695 aa17.5■□□□□ 0.39
UPF1-203ENST00000594504 RGPD2P0DJD1 1756 aa17.5■□□□□ 0.39
UPF1-203ENST00000594504 PTGER2P43116 358 aa17.49■□□□□ 0.39
UPF1-203ENST00000594504 GGNBP2Q9H3C7 697 aa17.49■□□□□ 0.39
UPF1-203ENST00000594504 FYB1O15117 783 aa17.48■□□□□ 0.39
UPF1-203ENST00000594504 RRS1Q15050 365 aaKnown RBP17.48■□□□□ 0.39
UPF1-203ENST00000594504 BTAF1O14981 1849 aa17.48■□□□□ 0.39
UPF1-203ENST00000594504 NINLQ9Y2I6 1382 aa17.48■□□□□ 0.39
UPF1-203ENST00000594504 TMF1P82094 1093 aa17.47■□□□□ 0.39
UPF1-203ENST00000594504 LRRC4BQ9NT99 713 aa17.47■□□□□ 0.39
UPF1-203ENST00000594504 ANKRD36BQ8N2N9 1353 aa17.46■□□□□ 0.39
UPF1-203ENST00000594504 USP47Q96K76 1375 aa17.46■□□□□ 0.39
UPF1-203ENST00000594504 SLC24A1O60721 1099 aa17.46■□□□□ 0.39
UPF1-203ENST00000594504 YY1P25490 414 aa17.45■□□□□ 0.38
UPF1-203ENST00000594504 KCNQ4P56696 695 aa17.45■□□□□ 0.38
UPF1-203ENST00000594504 ZNF827Q17R98 1081 aa17.45■□□□□ 0.38
UPF1-203ENST00000594504 USHBP1Q8N6Y0 703 aa17.45■□□□□ 0.38
UPF1-203ENST00000594504 NBPF6Q5VWK0 638 aa17.44■□□□□ 0.38
UPF1-203ENST00000594504 SYTL4Q96C24 671 aaPredicted RBP17.44■□□□□ 0.38
UPF1-203ENST00000594504 NBPF4Q96M43 638 aa17.44■□□□□ 0.38
UPF1-203ENST00000594504 MYOM1P52179 1685 aa17.44■□□□□ 0.38
UPF1-203ENST00000594504 PRIM1P49642 420 aaKnown RBP17.43■□□□□ 0.38
UPF1-203ENST00000594504 FAM208AQ9UK61 1670 aaKnown RBP17.42■□□□□ 0.38
UPF1-203ENST00000594504 ZCRB1Q8TBF4 217 aaKnown RBP17.42■□□□□ 0.38
UPF1-203ENST00000594504 MTFR1LQ9H019 292 aa17.42■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 61.5 ms