RNA–Protein interactions for RNA: ENST00000589117.5

ZNF540-206, Transcript of zinc finger protein 540, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene ZNF540, Length 2,349 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-206ENST00000589117 NPM2Q86SE8 214 aaKnown RBP9.52□□□□□ -0.89
ZNF540-206ENST00000589117 YEATS2Q9ULM3 1422 aa9.52□□□□□ -0.89
ZNF540-206ENST00000589117 PLEKHG3A1L390 1219 aa9.51□□□□□ -0.89
ZNF540-206ENST00000589117 DPYSL4O14531 572 aa9.51□□□□□ -0.89
ZNF540-206ENST00000589117 CT47B1P0C2W7 299 aaPredicted RBP9.51□□□□□ -0.89
ZNF540-206ENST00000589117 SAFB2Q14151 953 aaKnown RBP eCLIP9.51□□□□□ -0.89
ZNF540-206ENST00000589117 EMILIN3Q9NT22 766 aa9.51□□□□□ -0.89
ZNF540-206ENST00000589117 BCAR3O75815 825 aa9.51□□□□□ -0.89
ZNF540-206ENST00000589117 HDGFP51858 240 aaKnown RBP9.51□□□□□ -0.89
ZNF540-206ENST00000589117 RTL5Q5HYW3 569 aaPredicted RBP9.51□□□□□ -0.89
ZNF540-206ENST00000589117 PRAM1Q96QH2 718 aa9.51□□□□□ -0.89
ZNF540-206ENST00000589117 SIGLEC1Q9BZZ2 1709 aa9.51□□□□□ -0.89
ZNF540-206ENST00000589117 ARHGEF28Q8N1W1 1705 aaKnown RBP9.5□□□□□ -0.89
ZNF540-206ENST00000589117 ABCC11Q96J66 1382 aa9.5□□□□□ -0.89
ZNF540-206ENST00000589117 NEFMP07197 916 aa9.5□□□□□ -0.89
ZNF540-206ENST00000589117 FAM161AQ3B820 660 aa9.5□□□□□ -0.89
ZNF540-206ENST00000589117 ESF1Q9H501 851 aaKnown RBP9.5□□□□□ -0.89
ZNF540-206ENST00000589117 YTHDC2Q9H6S0 1430 aaKnown RBP9.5□□□□□ -0.89
ZNF540-206ENST00000589117 MAPK8IP3Q9UPT6 1336 aa9.5□□□□□ -0.89
ZNF540-206ENST00000589117 TULP4Q9NRJ4 1543 aa9.5□□□□□ -0.89
ZNF540-206ENST00000589117 PRKAR2AP13861 404 aaKnown RBP9.49□□□□□ -0.89
ZNF540-206ENST00000589117 PMFBP1Q8TBY8 1022 aa9.49□□□□□ -0.89
ZNF540-206ENST00000589117 PREX1Q8TCU6 1659 aa9.49□□□□□ -0.89
ZNF540-206ENST00000589117 MINK1Q8N4C8 1332 aaPredicted RBP9.49□□□□□ -0.89
ZNF540-206ENST00000589117 TMEM131LA2VDJ0 1609 aa9.49□□□□□ -0.89
ZNF540-206ENST00000589117 ABCF1Q8NE71 845 aaKnown RBP eCLIP9.49□□□□□ -0.89
ZNF540-206ENST00000589117 CLUAP1Q96AJ1 413 aa9.49□□□□□ -0.89
ZNF540-206ENST00000589117 A0A1W2PP64 1363 aa9.48□□□□□ -0.89
ZNF540-206ENST00000589117 PAK3O75914 559 aaPredicted RBP9.48□□□□□ -0.89
ZNF540-206ENST00000589117 RARSP54136 660 aaKnown RBP9.48□□□□□ -0.89
ZNF540-206ENST00000589117 FRAT1Q92837 279 aaPredicted RBP9.48□□□□□ -0.89
ZNF540-206ENST00000589117 RRP7AQ9Y3A4 280 aaKnown RBP9.48□□□□□ -0.89
ZNF540-206ENST00000589117 MED14O60244 1454 aa9.48□□□□□ -0.89
ZNF540-206ENST00000589117 U2SURPO15042 1029 aaKnown RBP9.48□□□□□ -0.89
ZNF540-206ENST00000589117 TRPC6Q9Y210 931 aa9.48□□□□□ -0.89
ZNF540-206ENST00000589117 AGLP35573 1532 aa9.47□□□□□ -0.89
ZNF540-206ENST00000589117 PPM1GO15355 546 aaPredicted RBP9.47□□□□□ -0.89
ZNF540-206ENST00000589117 FBXO31Q5XUX0 539 aaPredicted RBP9.47□□□□□ -0.89
ZNF540-206ENST00000589117 CDK19Q9BWU1 502 aa9.47□□□□□ -0.89
ZNF540-206ENST00000589117 REREQ9P2R6 1566 aa9.47□□□□□ -0.89
ZNF540-206ENST00000589117 PTPRMP28827 1452 aa9.47□□□□□ -0.89
ZNF540-206ENST00000589117 FYB1O15117 783 aa9.47□□□□□ -0.89
ZNF540-206ENST00000589117 PPP1R15BQ5SWA1 713 aa9.47□□□□□ -0.89
ZNF540-206ENST00000589117 GGNBP2Q9H3C7 697 aa9.47□□□□□ -0.89
ZNF540-206ENST00000589117 SHPRHQ149N8 1683 aa9.46□□□□□ -0.89
ZNF540-206ENST00000589117 DIAPH1O60610 1272 aaKnown RBP9.46□□□□□ -0.9
ZNF540-206ENST00000589117 USP35Q9P2H5 1018 aa9.46□□□□□ -0.9
ZNF540-206ENST00000589117 IQSEC2Q5JU85 1478 aa9.46□□□□□ -0.9
ZNF540-206ENST00000589117 IL16Q14005 1332 aa9.46□□□□□ -0.9
ZNF540-206ENST00000589117 APBB1O00213 710 aa9.45□□□□□ -0.9
ZNF540-206ENST00000589117 RWDD1Q9H446 243 aaPredicted RBP9.45□□□□□ -0.9
ZNF540-206ENST00000589117 COG6Q9Y2V7 657 aa9.45□□□□□ -0.9
ZNF540-206ENST00000589117 ALKQ9UM73 1620 aa9.45□□□□□ -0.9
ZNF540-206ENST00000589117 RGS3P49796 1198 aa9.45□□□□□ -0.9
ZNF540-206ENST00000589117 CABP1Q9NZU7 370 aa9.45□□□□□ -0.9
ZNF540-206ENST00000589117 FTSJ3Q8IY81 847 aaKnown RBP9.44□□□□□ -0.9
ZNF540-206ENST00000589117 PANK1Q8TE04 598 aa9.44□□□□□ -0.9
ZNF540-206ENST00000589117 FCHSD2O94868 740 aa9.44□□□□□ -0.9
ZNF540-206ENST00000589117 TMPOP42166 694 aaKnown RBP9.44□□□□□ -0.9
ZNF540-206ENST00000589117 CALD1Q05682 793 aaKnown RBP9.44□□□□□ -0.9
ZNF540-206ENST00000589117 ZKSCAN2Q63HK3 967 aa9.44□□□□□ -0.9
ZNF540-206ENST00000589117 IPO8O15397 1037 aaKnown RBP9.43□□□□□ -0.9
ZNF540-206ENST00000589117 DIP2BQ9P265 1576 aa9.43□□□□□ -0.9
ZNF540-206ENST00000589117 PHF12Q96QT6 1004 aa9.43□□□□□ -0.9
ZNF540-206ENST00000589117 PLEKHF1Q96S99 279 aa9.43□□□□□ -0.9
ZNF540-206ENST00000589117 DLC1Q96QB1 1528 aa9.43□□□□□ -0.9
ZNF540-206ENST00000589117 RIMS2Q9UQ26 1411 aa9.43□□□□□ -0.9
ZNF540-206ENST00000589117 CLTCQ00610 1675 aaKnown RBP9.43□□□□□ -0.9
ZNF540-206ENST00000589117 RIPK4P57078 832 aa9.42□□□□□ -0.9
ZNF540-206ENST00000589117 DSG2Q14126 1118 aa9.42□□□□□ -0.9
ZNF540-206ENST00000589117 PARP9Q8IXQ6 854 aa9.42□□□□□ -0.9
ZNF540-206ENST00000589117 DZIP1LQ8IYY4 767 aaKnown RBP9.42□□□□□ -0.9
ZNF540-206ENST00000589117 CCDC102AQ96A19 550 aa9.42□□□□□ -0.9
ZNF540-206ENST00000589117 ZNF428Q96B54 188 aa9.42□□□□□ -0.9
ZNF540-206ENST00000589117 SIRT1Q96EB6 747 aa9.42□□□□□ -0.9
ZNF540-206ENST00000589117 UPF2Q9HAU5 1272 aaKnown RBP9.42□□□□□ -0.9
ZNF540-206ENST00000589117 ARHGEF40Q8TER5 1519 aa9.42□□□□□ -0.9
ZNF540-206ENST00000589117 FECHP22830 423 aa9.42□□□□□ -0.9
ZNF540-206ENST00000589117 PDIA6Q15084 440 aa9.42□□□□□ -0.9
ZNF540-206ENST00000589117 CHMP4BQ9H444 224 aaKnown RBP9.42□□□□□ -0.9
ZNF540-206ENST00000589117 SMC4Q9NTJ3 1288 aa9.42□□□□□ -0.9
ZNF540-206ENST00000589117 A2ML1A8K2U0 1454 aa9.41□□□□□ -0.9
ZNF540-206ENST00000589117 ATP7BP35670 1465 aa9.41□□□□□ -0.9
ZNF540-206ENST00000589117 MYO5BQ9ULV0 1848 aa9.41□□□□□ -0.9
ZNF540-206ENST00000589117 ZMYM3Q14202 1370 aa9.41□□□□□ -0.9
ZNF540-206ENST00000589117 PNPLA6Q8IY17 1366 aa9.41□□□□□ -0.9
ZNF540-206ENST00000589117 SPATA31D1Q6ZQQ2 1576 aa9.41□□□□□ -0.9
ZNF540-206ENST00000589117 IGHDP01880 384 aa9.41□□□□□ -0.9
ZNF540-206ENST00000589117 MLECQ14165 292 aa9.41□□□□□ -0.9
ZNF540-206ENST00000589117 C8orf34Q49A92 452 aa9.41□□□□□ -0.9
ZNF540-206ENST00000589117 MVPQ14764 893 aaKnown RBP9.4□□□□□ -0.9
ZNF540-206ENST00000589117 GPHNQ9NQX3 736 aaPredicted RBP9.4□□□□□ -0.9
ZNF540-206ENST00000589117 DDX19BQ9UMR2 479 aa9.4□□□□□ -0.9
ZNF540-206ENST00000589117 ADGRB2O60241 1585 aa9.4□□□□□ -0.9
ZNF540-206ENST00000589117 WASLO00401 505 aaPredicted RBP9.4□□□□□ -0.9
ZNF540-206ENST00000589117 SUGP2Q8IX01 1082 aaKnown RBP eCLIP9.4□□□□□ -0.9
ZNF540-206ENST00000589117 KIF16BQ96L93 1317 aa9.4□□□□□ -0.9
ZNF540-206ENST00000589117 RIMBP3CA6NJZ7 1639 aa9.4□□□□□ -0.91
ZNF540-206ENST00000589117 RIMBP3BA6NNM3 1639 aa9.4□□□□□ -0.91
ZNF540-206ENST00000589117 RIMBP3Q9UFD9 1639 aa9.4□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms