RNA–Protein interactions for RNA: ENST00000585229.1

SMCHD1-212, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 4

Gene SMCHD1, Length 555 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-212ENST00000585229 PDAP1Q13442 181 aaKnown RBP13.46□□□□□ -0.25
SMCHD1-212ENST00000585229 MARF1Q9Y4F3 1742 aaKnown RBP13.46□□□□□ -0.25
SMCHD1-212ENST00000585229 PIK3C2AO00443 1686 aa13.46□□□□□ -0.26
SMCHD1-212ENST00000585229 TIE1P35590 1138 aa13.45□□□□□ -0.26
SMCHD1-212ENST00000585229 TTC21BQ7Z4L5 1316 aa13.44□□□□□ -0.26
SMCHD1-212ENST00000585229 TTC21AQ8NDW8 1320 aa13.44□□□□□ -0.26
SMCHD1-212ENST00000585229 ALS2Q96Q42 1657 aa13.44□□□□□ -0.26
SMCHD1-212ENST00000585229 PMFBP1Q8TBY8 1022 aa13.44□□□□□ -0.26
SMCHD1-212ENST00000585229 OVOS2A0A0J9YW53 1432 aa13.44□□□□□ -0.26
SMCHD1-212ENST00000585229 OVOS2Q6IE36 1432 aa13.44□□□□□ -0.26
SMCHD1-212ENST00000585229 TTLL13PA6NNM8 815 aa13.43□□□□□ -0.26
SMCHD1-212ENST00000585229 CCER2I3L3R5 266 aa13.43□□□□□ -0.26
SMCHD1-212ENST00000585229 FYB1O15117 783 aa13.43□□□□□ -0.26
SMCHD1-212ENST00000585229 ESCO1Q5FWF5 840 aa13.43□□□□□ -0.26
SMCHD1-212ENST00000585229 NGDNQ8NEJ9 315 aaKnown RBP13.43□□□□□ -0.26
SMCHD1-212ENST00000585229 ORAI2Q96SN7 254 aa13.43□□□□□ -0.26
SMCHD1-212ENST00000585229 USP31Q70CQ4 1352 aa13.43□□□□□ -0.26
SMCHD1-212ENST00000585229 CC2D1BQ5T0F9 858 aaKnown RBP13.42□□□□□ -0.26
SMCHD1-212ENST00000585229 PXDNQ92626 1479 aa13.42□□□□□ -0.26
SMCHD1-212ENST00000585229 MYBBP1AQ9BQG0 1328 aaKnown RBP13.41□□□□□ -0.26
SMCHD1-212ENST00000585229 ATMINO43313 823 aaPredicted RBP13.41□□□□□ -0.26
SMCHD1-212ENST00000585229 ASTLQ6HA08 431 aaPredicted RBP13.41□□□□□ -0.26
SMCHD1-212ENST00000585229 TMEM106CQ9BVX2 250 aa13.41□□□□□ -0.26
SMCHD1-212ENST00000585229 SLAIN2Q9P270 581 aa13.41□□□□□ -0.26
SMCHD1-212ENST00000585229 ROBO1Q9Y6N7 1651 aa13.4□□□□□ -0.26
SMCHD1-212ENST00000585229 AHDC1Q5TGY3 1603 aaPredicted RBP13.4□□□□□ -0.26
SMCHD1-212ENST00000585229 BRINP3Q76B58 766 aa13.4□□□□□ -0.26
SMCHD1-212ENST00000585229 SBNO1A3KN83 1393 aa13.4□□□□□ -0.26
SMCHD1-212ENST00000585229 NPHP3Q7Z494 1330 aa13.39□□□□□ -0.27
SMCHD1-212ENST00000585229 ATN1P54259 1190 aaPredicted RBP13.39□□□□□ -0.27
SMCHD1-212ENST00000585229 CRYBG1Q9Y4K1 1723 aa13.39□□□□□ -0.27
SMCHD1-212ENST00000585229 MED1Q15648 1581 aaPredicted RBP13.38□□□□□ -0.27
SMCHD1-212ENST00000585229 NLRP13Q86W25 1043 aa13.38□□□□□ -0.27
SMCHD1-212ENST00000585229 NME9Q86XW9 330 aa13.38□□□□□ -0.27
SMCHD1-212ENST00000585229 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.38□□□□□ -0.27
SMCHD1-212ENST00000585229 PELP1Q8IZL8 1130 aaKnown RBP13.38□□□□□ -0.27
SMCHD1-212ENST00000585229 GGNBP2Q9H3C7 697 aa13.38□□□□□ -0.27
SMCHD1-212ENST00000585229 SMG6Q86US8 1419 aaKnown RBP13.38□□□□□ -0.27
SMCHD1-212ENST00000585229 AATKQ6ZMQ8 1374 aa13.37□□□□□ -0.27
SMCHD1-212ENST00000585229 DCBLD2Q96PD2 775 aa13.37□□□□□ -0.27
SMCHD1-212ENST00000585229 MAP2P11137 1827 aaKnown RBP13.36□□□□□ -0.27
SMCHD1-212ENST00000585229 SLIT3O75094 1523 aa13.36□□□□□ -0.27
SMCHD1-212ENST00000585229 FOXO3O43524 673 aa13.36□□□□□ -0.27
SMCHD1-212ENST00000585229 PPP2R1AP30153 589 aa13.36□□□□□ -0.27
SMCHD1-212ENST00000585229 MORC1Q86VD1 984 aa13.36□□□□□ -0.27
SMCHD1-212ENST00000585229 BCL11BQ9C0K0 894 aaPredicted RBP13.36□□□□□ -0.27
SMCHD1-212ENST00000585229 TNS3Q68CZ2 1445 aa13.36□□□□□ -0.27
SMCHD1-212ENST00000585229 SOS2Q07890 1332 aaPredicted RBP13.36□□□□□ -0.27
SMCHD1-212ENST00000585229 PHRF1Q9P1Y6 1649 aaKnown RBP13.35□□□□□ -0.27
SMCHD1-212ENST00000585229 STK25O00506 426 aa13.35□□□□□ -0.27
SMCHD1-212ENST00000585229 PSME1Q06323 249 aa13.35□□□□□ -0.27
SMCHD1-212ENST00000585229 KRT28Q7Z3Y7 464 aa13.35□□□□□ -0.27
SMCHD1-212ENST00000585229 HS6ST3Q8IZP7 471 aa13.35□□□□□ -0.27
SMCHD1-212ENST00000585229 NFAT5O94916 1531 aa13.34□□□□□ -0.27
SMCHD1-212ENST00000585229 COG3Q96JB2 828 aa13.34□□□□□ -0.27
SMCHD1-212ENST00000585229 TAOK2Q9UL54 1235 aa13.34□□□□□ -0.27
SMCHD1-212ENST00000585229 USP19O94966 1318 aa13.34□□□□□ -0.27
SMCHD1-212ENST00000585229 INSRP06213 1382 aa13.33□□□□□ -0.27
SMCHD1-212ENST00000585229 CERKQ8TCT0 537 aa13.33□□□□□ -0.28
SMCHD1-212ENST00000585229 COL3A1P02461 1466 aaPredicted RBP13.33□□□□□ -0.28
SMCHD1-212ENST00000585229 SHPRHQ149N8 1683 aa13.33□□□□□ -0.28
SMCHD1-212ENST00000585229 SPATA31A3Q5VYP0 1347 aa13.33□□□□□ -0.28
SMCHD1-212ENST00000585229 ABCA3Q99758 1704 aa13.33□□□□□ -0.28
SMCHD1-212ENST00000585229 COL16A1Q07092 1604 aaPredicted RBP13.32□□□□□ -0.28
SMCHD1-212ENST00000585229 CDK12Q9NYV4 1490 aaPredicted RBP13.32□□□□□ -0.28
SMCHD1-212ENST00000585229 TOM1O60784 492 aa13.32□□□□□ -0.28
SMCHD1-212ENST00000585229 CCDC184Q52MB2 194 aa13.32□□□□□ -0.28
SMCHD1-212ENST00000585229 TRIM35Q9UPQ4 493 aa13.32□□□□□ -0.28
SMCHD1-212ENST00000585229 STK24Q9Y6E0 443 aa13.32□□□□□ -0.28
SMCHD1-212ENST00000585229 ARHGEF10O15013 1369 aa13.32□□□□□ -0.28
SMCHD1-212ENST00000585229 COL22A1Q8NFW1 1626 aaPredicted RBP13.31□□□□□ -0.28
SMCHD1-212ENST00000585229 PHLPP1O60346 1717 aa13.31□□□□□ -0.28
SMCHD1-212ENST00000585229 PEAK1Q9H792 1746 aa13.31□□□□□ -0.28
SMCHD1-212ENST00000585229 LTN1O94822 1766 aa13.31□□□□□ -0.28
SMCHD1-212ENST00000585229 CNGB1Q14028 1251 aaPredicted RBP13.31□□□□□ -0.28
SMCHD1-212ENST00000585229 PNPLA6Q8IY17 1366 aa13.31□□□□□ -0.28
SMCHD1-212ENST00000585229 XPCQ01831 940 aaPredicted RBP13.3□□□□□ -0.28
SMCHD1-212ENST00000585229 ABTB2Q8N961 1025 aa13.3□□□□□ -0.28
SMCHD1-212ENST00000585229 DDX17Q92841 729 aaKnown RBP13.3□□□□□ -0.28
SMCHD1-212ENST00000585229 MRS2Q9HD23 443 aa13.3□□□□□ -0.28
SMCHD1-212ENST00000585229 NLRP6P59044 892 aa13.29□□□□□ -0.28
SMCHD1-212ENST00000585229 POLKQ9UBT6 870 aa13.29□□□□□ -0.28
SMCHD1-212ENST00000585229 KIF24Q5T7B8 1368 aa13.29□□□□□ -0.28
SMCHD1-212ENST00000585229 ABCC6O95255 1503 aa13.29□□□□□ -0.28
SMCHD1-212ENST00000585229 MTHFSP49914 203 aa13.27□□□□□ -0.29
SMCHD1-212ENST00000585229 RTL1A6NKG5 1358 aa13.27□□□□□ -0.29
SMCHD1-212ENST00000585229 UBAP1LF5GYI3 381 aa13.26□□□□□ -0.29
SMCHD1-212ENST00000585229 TNNT2P45379 298 aaPredicted RBP13.26□□□□□ -0.29
SMCHD1-212ENST00000585229 EFCAB3Q8N7B9 438 aa13.26□□□□□ -0.29
SMCHD1-212ENST00000585229 KCNH5Q8NCM2 988 aa13.26□□□□□ -0.29
SMCHD1-212ENST00000585229 PNISRQ8TF01 805 aaKnown RBP13.26□□□□□ -0.29
SMCHD1-212ENST00000585229 COL18A1P39060 1754 aa13.25□□□□□ -0.29
SMCHD1-212ENST00000585229 NUTM2GQ5VZR2 741 aa13.25□□□□□ -0.29
SMCHD1-212ENST00000585229 RGPD1P0DJD0 1748 aa13.25□□□□□ -0.29
SMCHD1-212ENST00000585229 FLT4P35916 1363 aa13.24□□□□□ -0.29
SMCHD1-212ENST00000585229 MAP3K19Q56UN5 1328 aa13.24□□□□□ -0.29
SMCHD1-212ENST00000585229 NKX1-1Q15270 411 aaPredicted RBP13.24□□□□□ -0.29
SMCHD1-212ENST00000585229 CFAP53Q96M91 514 aa13.24□□□□□ -0.29
SMCHD1-212ENST00000585229 EMILIN1Q9Y6C2 1016 aa13.24□□□□□ -0.29
SMCHD1-212ENST00000585229 CPDO75976 1380 aa13.23□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms