RNA–Protein interactions for RNA: ENST00000580003.1

SS18-214, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 609 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-214ENST00000580003 FSHRP23945 695 aa13.19□□□□□ -0.3
SS18-214ENST00000580003 NNTQ13423 1086 aa13.19□□□□□ -0.3
SS18-214ENST00000580003 GRM5P41594 1212 aa13.18□□□□□ -0.3
SS18-214ENST00000580003 PROSER2Q86WR7 435 aaPredicted RBP13.18□□□□□ -0.3
SS18-214ENST00000580003 A6NJR5 290 aa13.17□□□□□ -0.3
SS18-214ENST00000580003 HPS1Q92902 700 aa13.16□□□□□ -0.3
SS18-214ENST00000580003 SOX11P35716 441 aa13.15□□□□□ -0.3
SS18-214ENST00000580003 AVPP01185 164 aa13.13□□□□□ -0.31
SS18-214ENST00000580003 RAB15P59190 212 aa13.13□□□□□ -0.31
SS18-214ENST00000580003 SEMA3FQ13275 785 aa13.13□□□□□ -0.31
SS18-214ENST00000580003 CCDC116Q8IYX3 515 aa13.13□□□□□ -0.31
SS18-214ENST00000580003 NR3C2P08235 984 aa13.12□□□□□ -0.31
SS18-214ENST00000580003 DHX9Q08211 1270 aaKnown RBP13.12□□□□□ -0.31
SS18-214ENST00000580003 INTS6LQ5JSJ4 861 aaKnown RBP13.12□□□□□ -0.31
SS18-214ENST00000580003 GIGYF1O75420 1035 aaPredicted RBP13.11□□□□□ -0.31
SS18-214ENST00000580003 CTC1Q2NKJ3 1217 aa13.11□□□□□ -0.31
SS18-214ENST00000580003 RNF20Q5VTR2 975 aa13.11□□□□□ -0.31
SS18-214ENST00000580003 SEPT12Q8IYM1 358 aa13.11□□□□□ -0.31
SS18-214ENST00000580003 ESPNB1AK53 854 aa13.1□□□□□ -0.31
SS18-214ENST00000580003 WDR4P57081 412 aaKnown RBP13.1□□□□□ -0.31
SS18-214ENST00000580003 FNBP4Q8N3X1 1017 aaPredicted RBP13.1□□□□□ -0.31
SS18-214ENST00000580003 EMILIN1Q9Y6C2 1016 aa13.1□□□□□ -0.31
SS18-214ENST00000580003 MYT1Q01538 1121 aa13.09□□□□□ -0.31
SS18-214ENST00000580003 CEP126Q9P2H0 1117 aa13.09□□□□□ -0.31
SS18-214ENST00000580003 AXIN1O15169 862 aa13.08□□□□□ -0.32
SS18-214ENST00000580003 TRAF7Q6Q0C0 670 aa13.08□□□□□ -0.32
SS18-214ENST00000580003 C14orf37Q86TY3 774 aa13.08□□□□□ -0.32
SS18-214ENST00000580003 CCDC125Q86Z20 511 aa13.08□□□□□ -0.32
SS18-214ENST00000580003 ZMYND15Q9H091 742 aa13.08□□□□□ -0.32
SS18-214ENST00000580003 PGPEP1Q9NXJ5 209 aa13.08□□□□□ -0.32
SS18-214ENST00000580003 CAPN5O15484 640 aaPredicted RBP13.07□□□□□ -0.32
SS18-214ENST00000580003 SMCPP49901 116 aaPredicted RBP13.07□□□□□ -0.32
SS18-214ENST00000580003 PPP1R26Q5T8A7 1209 aaPredicted RBP13.07□□□□□ -0.32
SS18-214ENST00000580003 TRIM52Q96A61 297 aa13.07□□□□□ -0.32
SS18-214ENST00000580003 POM121CA8CG34 1229 aa13.06□□□□□ -0.32
SS18-214ENST00000580003 ZIC2O95409 532 aaPredicted RBP13.06□□□□□ -0.32
SS18-214ENST00000580003 CRIPAKQ8N1N5 446 aa13.06□□□□□ -0.32
SS18-214ENST00000580003 TIMP2P16035 220 aa13.05□□□□□ -0.32
SS18-214ENST00000580003 SLFNL1Q499Z3 407 aa13.05□□□□□ -0.32
SS18-214ENST00000580003 ITPKCQ96DU7 683 aa13.05□□□□□ -0.32
SS18-214ENST00000580003 TRAK2O60296 914 aa13.04□□□□□ -0.32
SS18-214ENST00000580003 ERICH6Q7L0X2 663 aa13.04□□□□□ -0.32
SS18-214ENST00000580003 KLF16Q9BXK1 252 aaPredicted RBP13.04□□□□□ -0.32
SS18-214ENST00000580003 ALG2Q9H553 416 aa13.04□□□□□ -0.32
SS18-214ENST00000580003 ERVH48-1M5A8F1 160 aa13.03□□□□□ -0.32
SS18-214ENST00000580003 ST8SIA5O15466 376 aa13.03□□□□□ -0.32
SS18-214ENST00000580003 AAASQ9NRG9 546 aa13.03□□□□□ -0.32
SS18-214ENST00000580003 HDGFL1Q5TGJ6 251 aa13.02□□□□□ -0.33
SS18-214ENST00000580003 RNF135Q8IUD6 432 aa13.02□□□□□ -0.33
SS18-214ENST00000580003 ZFAND3Q9H8U3 227 aa13.02□□□□□ -0.33
SS18-214ENST00000580003 TMPRSS4Q9NRS4 437 aa13.01□□□□□ -0.33
SS18-214ENST00000580003 PCDHB11Q9Y5F2 797 aa13□□□□□ -0.33
SS18-214ENST00000580003 ZNF784Q8NCA9 323 aaPredicted RBP12.98□□□□□ -0.33
SS18-214ENST00000580003 GLMNQ92990 594 aa12.98□□□□□ -0.33
SS18-214ENST00000580003 PHTF2Q8N3S3 785 aa12.97□□□□□ -0.33
SS18-214ENST00000580003 ADAMTS19Q8TE59 1207 aa12.97□□□□□ -0.33
SS18-214ENST00000580003 ESF1Q9H501 851 aaKnown RBP12.97□□□□□ -0.33
SS18-214ENST00000580003 ZNF777Q9ULD5 760 aaPredicted RBP12.97□□□□□ -0.33
SS18-214ENST00000580003 LCE2BO14633 110 aa12.96□□□□□ -0.33
SS18-214ENST00000580003 CALR3Q96L12 384 aaKnown RBP12.96□□□□□ -0.33
SS18-214ENST00000580003 CCDC85AQ96PX6 553 aaPredicted RBP12.96□□□□□ -0.33
SS18-214ENST00000580003 CYLDQ9NQC7 956 aa12.96□□□□□ -0.33
SS18-214ENST00000580003 DOLKQ9UPQ8 538 aa12.96□□□□□ -0.33
SS18-214ENST00000580003 UPP2O95045 317 aa12.94□□□□□ -0.34
SS18-214ENST00000580003 CBLBQ13191 982 aa12.94□□□□□ -0.34
SS18-214ENST00000580003 MEIOBQ8N635 442 aa12.94□□□□□ -0.34
SS18-214ENST00000580003 ATP13A2Q9NQ11 1180 aa12.94□□□□□ -0.34
SS18-214ENST00000580003 MAP7D1Q3KQU3 841 aa12.93□□□□□ -0.34
SS18-214ENST00000580003 CC2D2BQ6DHV5 1058 aa12.93□□□□□ -0.34
SS18-214ENST00000580003 DACH1Q9UI36 760 aa12.93□□□□□ -0.34
SS18-214ENST00000580003 PIK3CDO00329 1044 aa12.92□□□□□ -0.34
SS18-214ENST00000580003 LILRA1O75019 489 aa12.92□□□□□ -0.34
SS18-214ENST00000580003 MYCP01106 439 aaPredicted RBP12.92□□□□□ -0.34
SS18-214ENST00000580003 SKIP12755 728 aa12.92□□□□□ -0.34
SS18-214ENST00000580003 BMP1P13497 986 aa12.92□□□□□ -0.34
SS18-214ENST00000580003 SCARF1Q14162 830 aa12.92□□□□□ -0.34
SS18-214ENST00000580003 MRPL14Q6P1L8 145 aaKnown RBP12.92□□□□□ -0.34
SS18-214ENST00000580003 Q6ZVU0 165 aa12.92□□□□□ -0.34
SS18-214ENST00000580003 PLPP7Q8NBV4 271 aa12.92□□□□□ -0.34
SS18-214ENST00000580003 NFATC2IPQ8NCF5 419 aa12.92□□□□□ -0.34
SS18-214ENST00000580003 ERVK-9P63128 1117 aa12.91□□□□□ -0.34
SS18-214ENST00000580003 CHIC2Q9UKJ5 165 aa12.91□□□□□ -0.34
SS18-214ENST00000580003 TSGA10IPQ3SY00 556 aa12.9□□□□□ -0.34
SS18-214ENST00000580003 OXLD1Q5BKU9 147 aa12.9□□□□□ -0.34
SS18-214ENST00000580003 TSEN34Q9BSV6 310 aaKnown RBP12.9□□□□□ -0.34
SS18-214ENST00000580003 CDCA7Q9BWT1 371 aaPredicted RBP12.9□□□□□ -0.34
SS18-214ENST00000580003 ADH1AP07327 375 aa12.89□□□□□ -0.35
SS18-214ENST00000580003 USP4Q13107 963 aa12.89□□□□□ -0.35
SS18-214ENST00000580003 TRIM46Q7Z4K8 759 aa12.89□□□□□ -0.35
SS18-214ENST00000580003 LINC00528Q8N1L1 170 aa12.89□□□□□ -0.35
SS18-214ENST00000580003 SIRT1Q96EB6 747 aa12.89□□□□□ -0.35
SS18-214ENST00000580003 ADD1P35611 737 aaKnown RBP12.88□□□□□ -0.35
SS18-214ENST00000580003 SCTRP47872 440 aa12.88□□□□□ -0.35
SS18-214ENST00000580003 SENP2Q9HC62 589 aa12.88□□□□□ -0.35
SS18-214ENST00000580003 BMP2P12643 396 aa12.87□□□□□ -0.35
SS18-214ENST00000580003 C6orf118Q5T5N4 469 aa12.87□□□□□ -0.35
SS18-214ENST00000580003 AGBL1Q96MI9 1066 aa12.87□□□□□ -0.35
SS18-214ENST00000580003 PURBQ96QR8 312 aaKnown RBP12.87□□□□□ -0.35
SS18-214ENST00000580003 UCN2Q96RP3 112 aa12.87□□□□□ -0.35
SS18-214ENST00000580003 LZTS3O60299 673 aaPredicted RBP12.86□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms