RNA–Protein interactions for RNA: ENST00000578998.1

RBFOX3-202, Transcript of RNA binding fox-1 homolog 3, humanhuman

TSL 2

Gene RBFOX3, Length 3,072 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RBFOX3-202ENST00000578998 C16orf71Q8IYS4 520 aaPredicted RBP16.43■□□□□ 0.22
RBFOX3-202ENST00000578998 PPIP5K1Q6PFW1 1433 aa16.43■□□□□ 0.22
RBFOX3-202ENST00000578998 IL13P35225 146 aa16.43■□□□□ 0.22
RBFOX3-202ENST00000578998 NUDT16Q96DE0 195 aaKnown RBP16.42■□□□□ 0.22
RBFOX3-202ENST00000578998 MIS18AQ9NYP9 233 aa16.42■□□□□ 0.22
RBFOX3-202ENST00000578998 MCM10Q7L590 875 aa16.42■□□□□ 0.22
RBFOX3-202ENST00000578998 PNPLA6Q8IY17 1366 aa16.42■□□□□ 0.22
RBFOX3-202ENST00000578998 PLEKHG5O94827 1062 aa16.42■□□□□ 0.22
RBFOX3-202ENST00000578998 SULT6B1Q6IMI4 303 aa16.42■□□□□ 0.22
RBFOX3-202ENST00000578998 CFAP74Q9C0B2 1584 aa16.41■□□□□ 0.22
RBFOX3-202ENST00000578998 WASLO00401 505 aaPredicted RBP16.41■□□□□ 0.22
RBFOX3-202ENST00000578998 RRAGDQ9NQL2 400 aaPredicted RBP16.41■□□□□ 0.22
RBFOX3-202ENST00000578998 CALD1Q05682 793 aaKnown RBP16.4■□□□□ 0.22
RBFOX3-202ENST00000578998 TNPO1Q92973 898 aaKnown RBP16.4■□□□□ 0.22
RBFOX3-202ENST00000578998 ESF1Q9H501 851 aaKnown RBP16.4■□□□□ 0.22
RBFOX3-202ENST00000578998 SMARCA5O60264 1052 aaPredicted RBP16.4■□□□□ 0.22
RBFOX3-202ENST00000578998 BMP2KLQ5H9B9 411 aa16.4■□□□□ 0.22
RBFOX3-202ENST00000578998 IFT57Q9NWB7 429 aa16.4■□□□□ 0.22
RBFOX3-202ENST00000578998 ZMYM3Q14202 1370 aa16.4■□□□□ 0.22
RBFOX3-202ENST00000578998 ARHGAP31Q2M1Z3 1444 aa16.4■□□□□ 0.22
RBFOX3-202ENST00000578998 NEO1Q92859 1461 aa16.4■□□□□ 0.22
RBFOX3-202ENST00000578998 OTUD7AQ8TE49 926 aaPredicted RBP16.39■□□□□ 0.22
RBFOX3-202ENST00000578998 FAM135BQ49AJ0 1406 aa16.39■□□□□ 0.21
RBFOX3-202ENST00000578998 ALKQ9UM73 1620 aa16.39■□□□□ 0.21
RBFOX3-202ENST00000578998 FAM43AQ8N2R8 423 aa16.39■□□□□ 0.21
RBFOX3-202ENST00000578998 GCC1Q96CN9 775 aa16.39■□□□□ 0.21
RBFOX3-202ENST00000578998 ZFYVE9O95405 1425 aa16.39■□□□□ 0.21
RBFOX3-202ENST00000578998 ARHGEF40Q8TER5 1519 aa16.39■□□□□ 0.21
RBFOX3-202ENST00000578998 RBM25P49756 843 aaKnown RBP16.38■□□□□ 0.21
RBFOX3-202ENST00000578998 SLC4A10Q6U841 1118 aa16.38■□□□□ 0.21
RBFOX3-202ENST00000578998 CFAP44Q96MT7 982 aa16.38■□□□□ 0.21
RBFOX3-202ENST00000578998 TMEM131LA2VDJ0 1609 aa16.37■□□□□ 0.21
RBFOX3-202ENST00000578998 ZNF692Q9BU19 519 aaPredicted RBP16.37■□□□□ 0.21
RBFOX3-202ENST00000578998 KIF2CQ99661 725 aa16.36■□□□□ 0.21
RBFOX3-202ENST00000578998 API5Q9BZZ5 524 aaKnown RBP16.36■□□□□ 0.21
RBFOX3-202ENST00000578998 RIMS2Q9UQ26 1411 aa16.36■□□□□ 0.21
RBFOX3-202ENST00000578998 METP08581 1390 aa16.36■□□□□ 0.21
RBFOX3-202ENST00000578998 GSPT1P15170 499 aaKnown RBP16.35■□□□□ 0.21
RBFOX3-202ENST00000578998 NECTIN2Q92692 538 aa16.35■□□□□ 0.21
RBFOX3-202ENST00000578998 CCDC61Q9Y6R9 512 aa16.35■□□□□ 0.21
RBFOX3-202ENST00000578998 SSFA2P28290 1259 aa16.35■□□□□ 0.21
RBFOX3-202ENST00000578998 GAS2L2Q8NHY3 880 aa16.35■□□□□ 0.21
RBFOX3-202ENST00000578998 DDX11L8A8MPP1 907 aa16.34■□□□□ 0.21
RBFOX3-202ENST00000578998 LMOD3Q0VAK6 560 aa16.34■□□□□ 0.21
RBFOX3-202ENST00000578998 HSP90AB2PQ58FF8 381 aa16.34■□□□□ 0.21
RBFOX3-202ENST00000578998 CHMP4BQ9H444 224 aaKnown RBP16.34■□□□□ 0.21
RBFOX3-202ENST00000578998 PREX1Q8TCU6 1659 aa16.34■□□□□ 0.21
RBFOX3-202ENST00000578998 CDC45O75419 566 aa16.34■□□□□ 0.21
RBFOX3-202ENST00000578998 ZNF853P0CG23 659 aa16.34■□□□□ 0.21
RBFOX3-202ENST00000578998 ZNF428Q96B54 188 aa16.34■□□□□ 0.21
RBFOX3-202ENST00000578998 ABCC4O15439 1325 aa16.33■□□□□ 0.21
RBFOX3-202ENST00000578998 NCLP19338 710 aaKnown RBP16.33■□□□□ 0.21
RBFOX3-202ENST00000578998 ARHGAP45Q92619 1136 aa16.33■□□□□ 0.21
RBFOX3-202ENST00000578998 MAP2P11137 1827 aaKnown RBP16.33■□□□□ 0.21
RBFOX3-202ENST00000578998 F6X3S4 739 aa16.33■□□□□ 0.2
RBFOX3-202ENST00000578998 K7ELQ4 463 aaPredicted RBP16.33■□□□□ 0.2
RBFOX3-202ENST00000578998 FOXO3O43524 673 aa16.33■□□□□ 0.2
RBFOX3-202ENST00000578998 EIF4A2Q14240 407 aaKnown RBP16.33■□□□□ 0.2
RBFOX3-202ENST00000578998 PLEKHM2Q8IWE5 1019 aa16.33■□□□□ 0.2
RBFOX3-202ENST00000578998 MED14O60244 1454 aa16.33■□□□□ 0.2
RBFOX3-202ENST00000578998 GBP4Q96PP9 640 aa16.32■□□□□ 0.2
RBFOX3-202ENST00000578998 MEIS3Q99687 375 aa16.32■□□□□ 0.2
RBFOX3-202ENST00000578998 FOXD4L5Q5VV16 416 aaPredicted RBP16.32■□□□□ 0.2
RBFOX3-202ENST00000578998 FOXD4L4Q8WXT5 416 aaPredicted RBP16.32■□□□□ 0.2
RBFOX3-202ENST00000578998 SNX21Q969T3 373 aa16.32■□□□□ 0.2
RBFOX3-202ENST00000578998 TSHZ3Q63HK5 1081 aa16.31■□□□□ 0.2
RBFOX3-202ENST00000578998 GRPEL1Q9HAV7 217 aa16.31■□□□□ 0.2
RBFOX3-202ENST00000578998 SLC4A2P04920 1241 aa16.31■□□□□ 0.2
RBFOX3-202ENST00000578998 FSD2A1L4K1 749 aa16.3■□□□□ 0.2
RBFOX3-202ENST00000578998 PRR36Q9H6K5 1346 aa16.3■□□□□ 0.2
RBFOX3-202ENST00000578998 GAS2L3Q86XJ1 694 aa16.3■□□□□ 0.2
RBFOX3-202ENST00000578998 BRPF1P55201 1214 aaPredicted RBP16.29■□□□□ 0.2
RBFOX3-202ENST00000578998 NAP1L5Q96NT1 182 aaPredicted RBP16.29■□□□□ 0.2
RBFOX3-202ENST00000578998 SLC26A8Q96RN1 970 aa16.29■□□□□ 0.2
RBFOX3-202ENST00000578998 EDC4Q6P2E9 1401 aaKnown RBP16.29■□□□□ 0.2
RBFOX3-202ENST00000578998 CPS1P31327 1500 aa16.29■□□□□ 0.2
RBFOX3-202ENST00000578998 PTCH1Q13635 1447 aa16.29■□□□□ 0.2
RBFOX3-202ENST00000578998 A2ML1A8K2U0 1454 aa16.29■□□□□ 0.2
RBFOX3-202ENST00000578998 RAB3GAP1Q15042 981 aa16.28■□□□□ 0.2
RBFOX3-202ENST00000578998 NUTM2GQ5VZR2 741 aa16.28■□□□□ 0.2
RBFOX3-202ENST00000578998 RICTORQ6R327 1708 aa16.28■□□□□ 0.2
RBFOX3-202ENST00000578998 NOL8Q76FK4 1167 aaKnown RBP16.28■□□□□ 0.2
RBFOX3-202ENST00000578998 TSPOAP1O95153 1857 aa16.28■□□□□ 0.2
RBFOX3-202ENST00000578998 KIF20BQ96Q89 1820 aa16.28■□□□□ 0.2
RBFOX3-202ENST00000578998 MRE11P49959 708 aa16.28■□□□□ 0.2
RBFOX3-202ENST00000578998 G2E3Q7L622 706 aa16.28■□□□□ 0.2
RBFOX3-202ENST00000578998 TTC22Q5TAA0 569 aa16.27■□□□□ 0.2
RBFOX3-202ENST00000578998 DCTPP1Q9H773 170 aa16.27■□□□□ 0.2
RBFOX3-202ENST00000578998 ACEP12821 1306 aa16.27■□□□□ 0.2
RBFOX3-202ENST00000578998 ATP7BP35670 1465 aa16.27■□□□□ 0.19
RBFOX3-202ENST00000578998 DDIT3P35638 169 aa16.27■□□□□ 0.19
RBFOX3-202ENST00000578998 CHAMP1Q96JM3 812 aa16.27■□□□□ 0.19
RBFOX3-202ENST00000578998 ANKRD26Q9UPS8 1709 aa16.26■□□□□ 0.19
RBFOX3-202ENST00000578998 MSH6P52701 1360 aa16.26■□□□□ 0.19
RBFOX3-202ENST00000578998 SDSP20132 328 aa16.26■□□□□ 0.19
RBFOX3-202ENST00000578998 MCTP1Q6DN14 999 aa16.26■□□□□ 0.19
RBFOX3-202ENST00000578998 CEP85Q6P2H3 762 aa16.26■□□□□ 0.19
RBFOX3-202ENST00000578998 DDX49Q9Y6V7 483 aaKnown RBP16.26■□□□□ 0.19
RBFOX3-202ENST00000578998 PKP1Q13835 747 aa16.26■□□□□ 0.19
RBFOX3-202ENST00000578998 LTV1Q96GA3 475 aaPredicted RBP16.26■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 67 ms