RNA–Protein interactions for RNA: ENST00000578595.1

SS18-209, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 406 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-209ENST00000578595 NSD3Q9BZ95 1437 aa26.99■■□□□ 1.91
SS18-209ENST00000578595 LARP1Q6PKG0 1096 aaKnown RBP26.98■■□□□ 1.91
SS18-209ENST00000578595 ARHGEF25Q86VW2 580 aa26.96■■□□□ 1.91
SS18-209ENST00000578595 SPATA31A1Q5TZJ5 1347 aa26.95■■□□□ 1.91
SS18-209ENST00000578595 CSB-PGBD3P0DP91 1061 aa26.95■■□□□ 1.9
SS18-209ENST00000578595 GGNBP2Q9H3C7 697 aa26.95■■□□□ 1.9
SS18-209ENST00000578595 THSD7AQ9UPZ6 1657 aa26.94■■□□□ 1.9
SS18-209ENST00000578595 TOM1L2Q6ZVM7 507 aa26.93■■□□□ 1.9
SS18-209ENST00000578595 ABCC6O95255 1503 aa26.93■■□□□ 1.9
SS18-209ENST00000578595 WNK3Q9BYP7 1800 aa26.93■■□□□ 1.9
SS18-209ENST00000578595 CRB1P82279 1406 aa26.92■■□□□ 1.9
SS18-209ENST00000578595 UPF1Q92900 1129 aaKnown RBP eCLIP26.91■■□□□ 1.9
SS18-209ENST00000578595 AXIN2Q9Y2T1 843 aa26.91■■□□□ 1.9
SS18-209ENST00000578595 ANKRD26Q9UPS8 1709 aa26.9■■□□□ 1.9
SS18-209ENST00000578595 FYB1O15117 783 aa26.89■■□□□ 1.9
SS18-209ENST00000578595 KRT27Q7Z3Y8 459 aa26.89■■□□□ 1.9
SS18-209ENST00000578595 TCP11L2Q8N4U5 519 aa26.89■■□□□ 1.9
SS18-209ENST00000578595 CARD14Q9BXL6 1004 aa26.88■■□□□ 1.89
SS18-209ENST00000578595 WDR17Q8IZU2 1322 aa26.88■■□□□ 1.89
SS18-209ENST00000578595 C11orf95C9JLR9 678 aaPredicted RBP26.87■■□□□ 1.89
SS18-209ENST00000578595 ONECUT3O60422 494 aaPredicted RBP26.87■■□□□ 1.89
SS18-209ENST00000578595 CGNL1Q0VF96 1302 aa26.86■■□□□ 1.89
SS18-209ENST00000578595 AMPHP49418 695 aa26.85■■□□□ 1.89
SS18-209ENST00000578595 PARP4Q9UKK3 1724 aaKnown RBP26.85■■□□□ 1.89
SS18-209ENST00000578595 PANK3Q9H999 370 aa26.84■■□□□ 1.89
SS18-209ENST00000578595 FAM208AQ9UK61 1670 aaKnown RBP26.84■■□□□ 1.89
SS18-209ENST00000578595 KIF7Q2M1P5 1343 aa26.84■■□□□ 1.89
SS18-209ENST00000578595 MAP2P11137 1827 aaKnown RBP26.83■■□□□ 1.89
SS18-209ENST00000578595 FBLN1P23142 703 aa26.83■■□□□ 1.89
SS18-209ENST00000578595 BARGINQ6ZT62 677 aa26.82■■□□□ 1.88
SS18-209ENST00000578595 LTV1Q96GA3 475 aaPredicted RBP26.82■■□□□ 1.88
SS18-209ENST00000578595 THRAP3Q9Y2W1 955 aaKnown RBP26.82■■□□□ 1.88
SS18-209ENST00000578595 MAP3K19Q56UN5 1328 aa26.82■■□□□ 1.88
SS18-209ENST00000578595 RGPD2P0DJD1 1756 aa26.81■■□□□ 1.88
SS18-209ENST00000578595 LRRC37A3O60309 1634 aa26.81■■□□□ 1.88
SS18-209ENST00000578595 RRS1Q15050 365 aaKnown RBP26.81■■□□□ 1.88
SS18-209ENST00000578595 NLRP2Q9NX02 1062 aa26.81■■□□□ 1.88
SS18-209ENST00000578595 BLMP54132 1417 aaPredicted RBP26.81■■□□□ 1.88
SS18-209ENST00000578595 FAM182BQ5T319 152 aa26.8■■□□□ 1.88
SS18-209ENST00000578595 ANKRD24Q8TF21 1146 aa26.8■■□□□ 1.88
SS18-209ENST00000578595 ERBB3P21860 1342 aa26.8■■□□□ 1.88
SS18-209ENST00000578595 PDE3BQ13370 1112 aa26.79■■□□□ 1.88
SS18-209ENST00000578595 IP6K1Q92551 441 aa26.78■■□□□ 1.88
SS18-209ENST00000578595 EP400Q96L91 3159 aa26.78■■□□□ 1.88
SS18-209ENST00000578595 RGPD1P0DJD0 1748 aa26.76■■□□□ 1.88
SS18-209ENST00000578595 RTL1A6NKG5 1358 aa26.76■■□□□ 1.87
SS18-209ENST00000578595 CCDC7Q96M83 1385 aa26.76■■□□□ 1.87
SS18-209ENST00000578595 HOXC9P31274 260 aa26.76■■□□□ 1.87
SS18-209ENST00000578595 SF3B2Q13435 895 aaKnown RBP26.76■■□□□ 1.87
SS18-209ENST00000578595 CARD10Q9BWT7 1032 aa26.76■■□□□ 1.87
SS18-209ENST00000578595 PEAK1Q9H792 1746 aa26.76■■□□□ 1.87
SS18-209ENST00000578595 PPM1GO15355 546 aaPredicted RBP26.74■■□□□ 1.87
SS18-209ENST00000578595 TNNT2P45379 298 aaPredicted RBP26.74■■□□□ 1.87
SS18-209ENST00000578595 KNSTRNQ9Y448 316 aa26.74■■□□□ 1.87
SS18-209ENST00000578595 KAT6BQ8WYB5 2073 aa26.73■■□□□ 1.87
SS18-209ENST00000578595 SMG6Q86US8 1419 aaKnown RBP26.73■■□□□ 1.87
SS18-209ENST00000578595 DDB1Q16531 1140 aa26.71■■□□□ 1.87
SS18-209ENST00000578595 CCDC125Q86Z20 511 aa26.7■■□□□ 1.86
SS18-209ENST00000578595 FLT4P35916 1363 aa26.7■■□□□ 1.86
SS18-209ENST00000578595 CDCA7Q9BWT1 371 aaPredicted RBP26.69■■□□□ 1.86
SS18-209ENST00000578595 EMILIN1Q9Y6C2 1016 aa26.69■■□□□ 1.86
SS18-209ENST00000578595 TNS1Q9HBL0 1735 aaKnown RBP26.68■■□□□ 1.86
SS18-209ENST00000578595 NSD2O96028 1365 aa26.68■■□□□ 1.86
SS18-209ENST00000578595 WASHC2AQ641Q2 1341 aa26.67■■□□□ 1.86
SS18-209ENST00000578595 FAM196AQ6ZSG2 479 aa26.66■■□□□ 1.86
SS18-209ENST00000578595 MORC1Q86VD1 984 aa26.66■■□□□ 1.86
SS18-209ENST00000578595 DISP2A7MBM2 1401 aa26.65■■□□□ 1.86
SS18-209ENST00000578595 SBF2Q86WG5 1849 aa26.65■■□□□ 1.86
SS18-209ENST00000578595 OVOS2A0A0G2JMS6 1433 aa26.65■■□□□ 1.86
SS18-209ENST00000578595 KIF24Q5T7B8 1368 aa26.64■■□□□ 1.86
SS18-209ENST00000578595 IL2RBP14784 551 aa26.64■■□□□ 1.86
SS18-209ENST00000578595 CNGB1Q14028 1251 aaPredicted RBP26.64■■□□□ 1.86
SS18-209ENST00000578595 HSP90AB2PQ58FF8 381 aa26.64■■□□□ 1.86
SS18-209ENST00000578595 TNS2Q63HR2 1409 aa26.63■■□□□ 1.85
SS18-209ENST00000578595 INSRP06213 1382 aa26.62■■□□□ 1.85
SS18-209ENST00000578595 EXOC5O00471 708 aa26.62■■□□□ 1.85
SS18-209ENST00000578595 TRIM37O94972 964 aa26.61■■□□□ 1.85
SS18-209ENST00000578595 DEFB132Q7Z7B7 95 aa26.61■■□□□ 1.85
SS18-209ENST00000578595 BAG6P46379 1132 aa26.6■■□□□ 1.85
SS18-209ENST00000578595 USHBP1Q8N6Y0 703 aa26.6■■□□□ 1.85
SS18-209ENST00000578595 CC2D1BQ5T0F9 858 aaKnown RBP26.57■■□□□ 1.84
SS18-209ENST00000578595 POLKQ9UBT6 870 aa26.57■■□□□ 1.84
SS18-209ENST00000578595 NBPF6Q5VWK0 638 aa26.56■■□□□ 1.84
SS18-209ENST00000578595 NBPF4Q96M43 638 aa26.56■■□□□ 1.84
SS18-209ENST00000578595 AMER1Q5JTC6 1135 aaPredicted RBP26.55■■□□□ 1.84
SS18-209ENST00000578595 MARCH10Q8NA82 808 aaPredicted RBP26.55■■□□□ 1.84
SS18-209ENST00000578595 SHANK3Q9BYB0 1731 aa26.53■■□□□ 1.84
SS18-209ENST00000578595 RAPGEF4Q8WZA2 1011 aa26.53■■□□□ 1.84
SS18-209ENST00000578595 MEGF6O75095 1541 aa26.53■■□□□ 1.84
SS18-209ENST00000578595 APBA3O96018 575 aa26.52■■□□□ 1.84
SS18-209ENST00000578595 EN1Q05925 392 aaPredicted RBP26.51■■□□□ 1.83
SS18-209ENST00000578595 DDX54Q8TDD1 881 aaKnown RBP26.5■■□□□ 1.83
SS18-209ENST00000578595 PER1O15534 1290 aaPredicted RBP26.49■■□□□ 1.83
SS18-209ENST00000578595 TATP17735 454 aaPredicted RBP26.49■■□□□ 1.83
SS18-209ENST00000578595 NHSQ6T4R5 1651 aa26.49■■□□□ 1.83
SS18-209ENST00000578595 DOT1LQ8TEK3 1739 aa26.48■■□□□ 1.83
SS18-209ENST00000578595 ZEB1P37275 1124 aaPredicted RBP26.47■■□□□ 1.83
SS18-209ENST00000578595 EIF4A2Q14240 407 aaKnown RBP26.46■■□□□ 1.83
SS18-209ENST00000578595 ACSBG1Q96GR2 724 aa26.46■■□□□ 1.83
SS18-209ENST00000578595 ZCRB1Q8TBF4 217 aaKnown RBP26.45■■□□□ 1.82
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms