RNA–Protein interactions for RNA: ENST00000577827.5

PTPRM-205, Transcript of protein tyrosine phosphatase, receptor type M, humanhuman

TSL 2

Gene PTPRM, Length 4,640 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRM-205ENST00000577827 PIK3C2GO75747 1445 aa12.39□□□□□ -0.43
PTPRM-205ENST00000577827 SETQ01105 290 aaPredicted RBP12.39□□□□□ -0.43
PTPRM-205ENST00000577827 TRDNQ13061 729 aa12.39□□□□□ -0.43
PTPRM-205ENST00000577827 BAG4O95429 457 aaKnown RBP12.39□□□□□ -0.43
PTPRM-205ENST00000577827 PLB1Q6P1J6 1458 aa12.38□□□□□ -0.43
PTPRM-205ENST00000577827 IPO7O95373 1038 aaKnown RBP12.38□□□□□ -0.43
PTPRM-205ENST00000577827 TNMDQ9H2S6 317 aa12.38□□□□□ -0.43
PTPRM-205ENST00000577827 AKAP17AQ02040 695 aaKnown RBP12.38□□□□□ -0.43
PTPRM-205ENST00000577827 ZNF396Q96N95 335 aaPredicted RBP12.38□□□□□ -0.43
PTPRM-205ENST00000577827 NOM1Q5C9Z4 860 aaKnown RBP12.38□□□□□ -0.43
PTPRM-205ENST00000577827 CWC15Q9P013 229 aaKnown RBP12.38□□□□□ -0.43
PTPRM-205ENST00000577827 UHRF1BP1Q6BDS2 1440 aa12.38□□□□□ -0.43
PTPRM-205ENST00000577827 NOC3LQ8WTT2 800 aaKnown RBP12.38□□□□□ -0.43
PTPRM-205ENST00000577827 FSD1Q9BTV5 496 aa12.37□□□□□ -0.43
PTPRM-205ENST00000577827 CDK19Q9BWU1 502 aa12.37□□□□□ -0.43
PTPRM-205ENST00000577827 DYNC1I1O14576 645 aa12.37□□□□□ -0.43
PTPRM-205ENST00000577827 CCDC183Q5T5S1 534 aa12.37□□□□□ -0.43
PTPRM-205ENST00000577827 TAF3Q5VWG9 929 aa12.37□□□□□ -0.43
PTPRM-205ENST00000577827 CABP1Q9NZU7 370 aa12.37□□□□□ -0.43
PTPRM-205ENST00000577827 PPP6R1Q9UPN7 881 aa12.37□□□□□ -0.43
PTPRM-205ENST00000577827 HS1BP3Q53T59 392 aa12.37□□□□□ -0.43
PTPRM-205ENST00000577827 TOMM22Q9NS69 142 aa12.37□□□□□ -0.43
PTPRM-205ENST00000577827 PCDHB15Q9Y5E8 787 aa12.37□□□□□ -0.43
PTPRM-205ENST00000577827 SPC24Q8NBT2 197 aa12.36□□□□□ -0.43
PTPRM-205ENST00000577827 KDM2BQ8NHM5 1336 aa12.36□□□□□ -0.43
PTPRM-205ENST00000577827 HSP90B2PQ58FF3 399 aa12.36□□□□□ -0.43
PTPRM-205ENST00000577827 OLFM4Q6UX06 510 aa12.36□□□□□ -0.43
PTPRM-205ENST00000577827 TBC1D9Q6ZT07 1266 aa12.36□□□□□ -0.43
PTPRM-205ENST00000577827 ARHGAP45Q92619 1136 aa12.36□□□□□ -0.43
PTPRM-205ENST00000577827 NUP62CLQ9H1M0 184 aa12.36□□□□□ -0.43
PTPRM-205ENST00000577827 POLR3AO14802 1390 aaPredicted RBP12.36□□□□□ -0.43
PTPRM-205ENST00000577827 NUCB1Q02818 461 aa12.36□□□□□ -0.43
PTPRM-205ENST00000577827 PER1O15534 1290 aaPredicted RBP12.36□□□□□ -0.43
PTPRM-205ENST00000577827 UVSSAQ2YD98 709 aa12.36□□□□□ -0.43
PTPRM-205ENST00000577827 LARP1BQ659C4 914 aaKnown RBP12.36□□□□□ -0.43
PTPRM-205ENST00000577827 ZNF330Q9Y3S2 320 aaPredicted RBP12.36□□□□□ -0.43
PTPRM-205ENST00000577827 ITSN2Q9NZM3 1697 aa12.36□□□□□ -0.43
PTPRM-205ENST00000577827 FAM135AQ9P2D6 1515 aa12.35□□□□□ -0.43
PTPRM-205ENST00000577827 NPHP1O15259 732 aa12.35□□□□□ -0.43
PTPRM-205ENST00000577827 SULT6B1Q6IMI4 303 aa12.35□□□□□ -0.43
PTPRM-205ENST00000577827 CTTNBP2Q8WZ74 1663 aa12.35□□□□□ -0.43
PTPRM-205ENST00000577827 GRIN2AQ12879 1464 aa12.35□□□□□ -0.43
PTPRM-205ENST00000577827 KIF2AO00139 706 aaPredicted RBP12.35□□□□□ -0.43
PTPRM-205ENST00000577827 CREBRFQ8IUR6 639 aa12.35□□□□□ -0.43
PTPRM-205ENST00000577827 TTC5Q8N0Z6 440 aa12.35□□□□□ -0.43
PTPRM-205ENST00000577827 PODXL2Q9NZ53 605 aa12.35□□□□□ -0.43
PTPRM-205ENST00000577827 TEX14Q8IWB6 1497 aa12.35□□□□□ -0.43
PTPRM-205ENST00000577827 EIF2AK4Q9P2K8 1649 aaKnown RBP12.35□□□□□ -0.43
PTPRM-205ENST00000577827 SAFBQ15424 915 aaKnown RBP eCLIP12.34□□□□□ -0.43
PTPRM-205ENST00000577827 SMC5Q8IY18 1101 aa12.34□□□□□ -0.43
PTPRM-205ENST00000577827 RALYLQ86SE5 291 aaKnown RBP12.34□□□□□ -0.43
PTPRM-205ENST00000577827 PRIMPOLQ96LW4 560 aa12.34□□□□□ -0.43
PTPRM-205ENST00000577827 TESK2Q96S53 571 aa12.34□□□□□ -0.43
PTPRM-205ENST00000577827 DHX16O60231 1041 aaKnown RBP12.34□□□□□ -0.43
PTPRM-205ENST00000577827 MAP3K11Q16584 847 aa12.34□□□□□ -0.43
PTPRM-205ENST00000577827 CFAP45Q9UL16 551 aa12.34□□□□□ -0.43
PTPRM-205ENST00000577827 XPCQ01831 940 aaPredicted RBP12.33□□□□□ -0.44
PTPRM-205ENST00000577827 ERCC4Q92889 916 aaPredicted RBP12.33□□□□□ -0.44
PTPRM-205ENST00000577827 NPC1L1Q9UHC9 1359 aa12.33□□□□□ -0.44
PTPRM-205ENST00000577827 HDGFL1Q5TGJ6 251 aa12.33□□□□□ -0.44
PTPRM-205ENST00000577827 PDRG1Q9NUG6 133 aa12.33□□□□□ -0.44
PTPRM-205ENST00000577827 UNC13AQ9UPW8 1703 aa12.33□□□□□ -0.44
PTPRM-205ENST00000577827 PES1O00541 588 aaKnown RBP12.33□□□□□ -0.44
PTPRM-205ENST00000577827 MX1P20591 662 aa12.33□□□□□ -0.44
PTPRM-205ENST00000577827 RTEL1-TNFRSF6BF6WH68 1400 aa12.32□□□□□ -0.44
PTPRM-205ENST00000577827 BLOC1S2Q6QNY1 142 aa12.32□□□□□ -0.44
PTPRM-205ENST00000577827 SH2B1Q9NRF2 756 aaPredicted RBP12.32□□□□□ -0.44
PTPRM-205ENST00000577827 URB2Q14146 1524 aaKnown RBP12.32□□□□□ -0.44
PTPRM-205ENST00000577827 KRT32Q14532 448 aa12.32□□□□□ -0.44
PTPRM-205ENST00000577827 CCDC47Q96A33 483 aaKnown RBP12.32□□□□□ -0.44
PTPRM-205ENST00000577827 SPATA32Q96LK8 384 aa12.32□□□□□ -0.44
PTPRM-205ENST00000577827 ZMYM4Q5VZL5 1548 aa12.32□□□□□ -0.44
PTPRM-205ENST00000577827 RAB11FIP3O75154 756 aa12.32□□□□□ -0.44
PTPRM-205ENST00000577827 SMC2O95347 1197 aa12.32□□□□□ -0.44
PTPRM-205ENST00000577827 RAB3GAP1Q15042 981 aa12.32□□□□□ -0.44
PTPRM-205ENST00000577827 RIC3Q7Z5B4 369 aa12.32□□□□□ -0.44
PTPRM-205ENST00000577827 LRSAM1Q6UWE0 723 aa12.31□□□□□ -0.44
PTPRM-205ENST00000577827 JMYQ8N9B5 988 aa12.31□□□□□ -0.44
PTPRM-205ENST00000577827 PANK2Q9BZ23 570 aa12.31□□□□□ -0.44
PTPRM-205ENST00000577827 COL17A1Q9UMD9 1497 aaPredicted RBP12.31□□□□□ -0.44
PTPRM-205ENST00000577827 CEP57L1Q8IYX8 460 aa12.31□□□□□ -0.44
PTPRM-205ENST00000577827 SCAND2PQ9GZW5 306 aaPredicted RBP12.31□□□□□ -0.44
PTPRM-205ENST00000577827 PTPRCP08575 1304 aa12.31□□□□□ -0.44
PTPRM-205ENST00000577827 ZSCAN23Q3MJ62 389 aa12.31□□□□□ -0.44
PTPRM-205ENST00000577827 SHANK2Q9UPX8 1470 aa12.31□□□□□ -0.44
PTPRM-205ENST00000577827 CCDC9Q9Y3X0 531 aaKnown RBP12.31□□□□□ -0.44
PTPRM-205ENST00000577827 ANKRD36BQ8N2N9 1353 aa12.31□□□□□ -0.44
PTPRM-205ENST00000577827 RAPGEF6Q8TEU7 1601 aa12.3□□□□□ -0.44
PTPRM-205ENST00000577827 STK38Q15208 465 aa12.3□□□□□ -0.44
PTPRM-205ENST00000577827 TTC22Q5TAA0 569 aa12.3□□□□□ -0.44
PTPRM-205ENST00000577827 PZPP20742 1482 aa12.3□□□□□ -0.44
PTPRM-205ENST00000577827 SPATA31E1Q6ZUB1 1445 aa12.3□□□□□ -0.44
PTPRM-205ENST00000577827 ADGRF5Q8IZF2 1346 aa12.3□□□□□ -0.44
PTPRM-205ENST00000577827 KIF1BPQ96EK5 621 aa12.3□□□□□ -0.44
PTPRM-205ENST00000577827 JAKMIP1Q96N16 626 aaKnown RBP12.3□□□□□ -0.44
PTPRM-205ENST00000577827 BLMP54132 1417 aaPredicted RBP12.3□□□□□ -0.44
PTPRM-205ENST00000577827 ZMYM3Q14202 1370 aa12.3□□□□□ -0.44
PTPRM-205ENST00000577827 FBXW7Q969H0 707 aa12.3□□□□□ -0.44
PTPRM-205ENST00000577827 AK7Q96M32 723 aa12.3□□□□□ -0.44
PTPRM-205ENST00000577827 MPNDQ8N594 471 aa12.29□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms