RNA–Protein interactions for RNA: ENST00000574799.5

CCDC40-212, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best)

Gene CCDC40, Length 3,795 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-212ENST00000574799 PLEKHF1Q96S99 279 aa11.98□□□□□ -0.49
CCDC40-212ENST00000574799 ZNF142P52746 1687 aaPredicted RBP11.98□□□□□ -0.49
CCDC40-212ENST00000574799 MTHFSP49914 203 aa11.98□□□□□ -0.49
CCDC40-212ENST00000574799 DDX49Q9Y6V7 483 aaKnown RBP11.98□□□□□ -0.49
CCDC40-212ENST00000574799 LRRC7Q96NW7 1537 aa11.97□□□□□ -0.49
CCDC40-212ENST00000574799 ATAD2Q6PL18 1390 aa11.97□□□□□ -0.49
CCDC40-212ENST00000574799 PRR36Q9H6K5 1346 aa11.97□□□□□ -0.49
CCDC40-212ENST00000574799 CEBPAP49715 358 aaPredicted RBP11.97□□□□□ -0.49
CCDC40-212ENST00000574799 ZHX1Q9UKY1 873 aaPredicted RBP11.97□□□□□ -0.49
CCDC40-212ENST00000574799 PDZRN3Q9UPQ7 1066 aa11.97□□□□□ -0.49
CCDC40-212ENST00000574799 ADAMTSL3P82987 1691 aa11.97□□□□□ -0.49
CCDC40-212ENST00000574799 FSD2A1L4K1 749 aa11.96□□□□□ -0.49
CCDC40-212ENST00000574799 MAP7D2Q96T17 732 aa11.96□□□□□ -0.49
CCDC40-212ENST00000574799 TBC1D32Q96NH3 1257 aa11.96□□□□□ -0.49
CCDC40-212ENST00000574799 FBLN1P23142 703 aa11.96□□□□□ -0.5
CCDC40-212ENST00000574799 ISY1Q9ULR0 285 aaKnown RBP11.96□□□□□ -0.5
CCDC40-212ENST00000574799 SKOR2Q2VWA4 1001 aaPredicted RBP11.95□□□□□ -0.5
CCDC40-212ENST00000574799 ZSCAN30Q86W11 494 aa11.95□□□□□ -0.5
CCDC40-212ENST00000574799 CABP1Q9NZU7 370 aa11.95□□□□□ -0.5
CCDC40-212ENST00000574799 PLEKHG1Q9ULL1 1385 aa11.95□□□□□ -0.5
CCDC40-212ENST00000574799 E9PSI1 815 aa11.95□□□□□ -0.5
CCDC40-212ENST00000574799 CALD1Q05682 793 aaKnown RBP11.95□□□□□ -0.5
CCDC40-212ENST00000574799 CCDC173Q0VFZ6 552 aa11.95□□□□□ -0.5
CCDC40-212ENST00000574799 WWC1Q8IX03 1113 aa11.95□□□□□ -0.5
CCDC40-212ENST00000574799 CHD2O14647 1828 aaKnown RBP11.94□□□□□ -0.5
CCDC40-212ENST00000574799 ERBB4Q15303 1308 aa11.94□□□□□ -0.5
CCDC40-212ENST00000574799 MORC1Q86VD1 984 aa11.94□□□□□ -0.5
CCDC40-212ENST00000574799 USP54Q70EL1 1684 aa11.94□□□□□ -0.5
CCDC40-212ENST00000574799 GGNBP2Q9H3C7 697 aa11.94□□□□□ -0.5
CCDC40-212ENST00000574799 FMN2Q9NZ56 1722 aa11.94□□□□□ -0.5
CCDC40-212ENST00000574799 UQCRHLA0A096LP55 91 aa11.94□□□□□ -0.5
CCDC40-212ENST00000574799 UQCRHP07919 91 aa11.94□□□□□ -0.5
CCDC40-212ENST00000574799 PIK3C2AO00443 1686 aa11.93□□□□□ -0.5
CCDC40-212ENST00000574799 PPIP5K1Q6PFW1 1433 aa11.93□□□□□ -0.5
CCDC40-212ENST00000574799 SSH2Q76I76 1423 aa11.93□□□□□ -0.5
CCDC40-212ENST00000574799 ANTXR1Q9H6X2 564 aa11.93□□□□□ -0.5
CCDC40-212ENST00000574799 USP19O94966 1318 aa11.92□□□□□ -0.5
CCDC40-212ENST00000574799 CEP170BQ9Y4F5 1589 aaPredicted RBP11.92□□□□□ -0.5
CCDC40-212ENST00000574799 PTMSP20962 102 aa11.92□□□□□ -0.5
CCDC40-212ENST00000574799 SRPK2P78362 688 aaKnown RBP11.92□□□□□ -0.5
CCDC40-212ENST00000574799 TXNDC2Q86VQ3 553 aa11.92□□□□□ -0.5
CCDC40-212ENST00000574799 RRP7AQ9Y3A4 280 aaKnown RBP11.92□□□□□ -0.5
CCDC40-212ENST00000574799 ZRANB1Q9UGI0 708 aa11.92□□□□□ -0.5
CCDC40-212ENST00000574799 DIP2AQ14689 1571 aa11.91□□□□□ -0.5
CCDC40-212ENST00000574799 XPCQ01831 940 aaPredicted RBP11.91□□□□□ -0.5
CCDC40-212ENST00000574799 PDE3AQ14432 1141 aa11.91□□□□□ -0.5
CCDC40-212ENST00000574799 SIRT1Q96EB6 747 aa11.91□□□□□ -0.5
CCDC40-212ENST00000574799 WASLO00401 505 aaPredicted RBP11.91□□□□□ -0.5
CCDC40-212ENST00000574799 VIRMAQ69YN4 1812 aaKnown RBP11.9□□□□□ -0.5
CCDC40-212ENST00000574799 TNPO1Q92973 898 aaKnown RBP11.9□□□□□ -0.5
CCDC40-212ENST00000574799 EDC4Q6P2E9 1401 aaKnown RBP11.9□□□□□ -0.5
CCDC40-212ENST00000574799 TCP11L2Q8N4U5 519 aa11.89□□□□□ -0.51
CCDC40-212ENST00000574799 TRIM35Q9UPQ4 493 aa11.89□□□□□ -0.51
CCDC40-212ENST00000574799 PTCH1Q13635 1447 aa11.88□□□□□ -0.51
CCDC40-212ENST00000574799 TPRNQ4KMQ1 711 aa11.88□□□□□ -0.51
CCDC40-212ENST00000574799 OFD1O75665 1012 aa11.88□□□□□ -0.51
CCDC40-212ENST00000574799 CCDC27Q2M243 656 aa11.88□□□□□ -0.51
CCDC40-212ENST00000574799 GAS2L3Q86XJ1 694 aa11.88□□□□□ -0.51
CCDC40-212ENST00000574799 POLKQ9UBT6 870 aa11.88□□□□□ -0.51
CCDC40-212ENST00000574799 OVOS2A0A0J9YW53 1432 aa11.88□□□□□ -0.51
CCDC40-212ENST00000574799 OVOS2Q6IE36 1432 aa11.88□□□□□ -0.51
CCDC40-212ENST00000574799 RUNDC1Q96C34 613 aa11.88□□□□□ -0.51
CCDC40-212ENST00000574799 MTERF4Q7Z6M4 381 aaKnown RBP11.87□□□□□ -0.51
CCDC40-212ENST00000574799 CDK12Q9NYV4 1490 aaPredicted RBP11.87□□□□□ -0.51
CCDC40-212ENST00000574799 CAVIN1Q6NZI2 390 aaKnown RBP11.87□□□□□ -0.51
CCDC40-212ENST00000574799 ITPRIPQ8IWB1 547 aa11.87□□□□□ -0.51
CCDC40-212ENST00000574799 STAG3Q9UJ98 1225 aa11.87□□□□□ -0.51
CCDC40-212ENST00000574799 CDK11BP21127 795 aaKnown RBP11.86□□□□□ -0.51
CCDC40-212ENST00000574799 ABCF1Q8NE71 845 aaKnown RBP eCLIP11.86□□□□□ -0.51
CCDC40-212ENST00000574799 TNNQ9UQP3 1299 aa11.86□□□□□ -0.51
CCDC40-212ENST00000574799 MCTP1Q6DN14 999 aa11.86□□□□□ -0.51
CCDC40-212ENST00000574799 PLCB2Q00722 1185 aa11.85□□□□□ -0.51
CCDC40-212ENST00000574799 CSPP1Q1MSJ5 1256 aa11.85□□□□□ -0.51
CCDC40-212ENST00000574799 NME9Q86XW9 330 aa11.85□□□□□ -0.51
CCDC40-212ENST00000574799 PCDHB15Q9Y5E8 787 aa11.85□□□□□ -0.51
CCDC40-212ENST00000574799 NCBP3Q53F19 620 aaKnown RBP11.85□□□□□ -0.51
CCDC40-212ENST00000574799 NUDT16Q96DE0 195 aaKnown RBP11.85□□□□□ -0.51
CCDC40-212ENST00000574799 AATKQ6ZMQ8 1374 aa11.84□□□□□ -0.51
CCDC40-212ENST00000574799 AAMPQ13685 434 aa11.83□□□□□ -0.51
CCDC40-212ENST00000574799 RNF214Q8ND24 703 aa11.83□□□□□ -0.51
CCDC40-212ENST00000574799 TERF2IPQ9NYB0 399 aa11.83□□□□□ -0.51
CCDC40-212ENST00000574799 FOXD4L5Q5VV16 416 aaPredicted RBP11.83□□□□□ -0.52
CCDC40-212ENST00000574799 FOXD4L4Q8WXT5 416 aaPredicted RBP11.83□□□□□ -0.52
CCDC40-212ENST00000574799 USP6P35125 1406 aa11.83□□□□□ -0.52
CCDC40-212ENST00000574799 MPNDQ8N594 471 aa11.83□□□□□ -0.52
CCDC40-212ENST00000574799 NWD1Q149M9 1564 aa11.83□□□□□ -0.52
CCDC40-212ENST00000574799 SUGP2Q8IX01 1082 aaKnown RBP eCLIP11.82□□□□□ -0.52
CCDC40-212ENST00000574799 LNPKQ9C0E8 428 aa11.82□□□□□ -0.52
CCDC40-212ENST00000574799 EMILIN1Q9Y6C2 1016 aa11.82□□□□□ -0.52
CCDC40-212ENST00000574799 STRCP1A6NGW2 1772 aa11.82□□□□□ -0.52
CCDC40-212ENST00000574799 KIAA2012Q0VF49 1180 aa11.82□□□□□ -0.52
CCDC40-212ENST00000574799 SLC26A8Q96RN1 970 aa11.82□□□□□ -0.52
CCDC40-212ENST00000574799 SMC4Q9NTJ3 1288 aa11.82□□□□□ -0.52
CCDC40-212ENST00000574799 RLBP1P12271 317 aa11.81□□□□□ -0.52
CCDC40-212ENST00000574799 SSFA2P28290 1259 aa11.81□□□□□ -0.52
CCDC40-212ENST00000574799 IL13P35225 146 aa11.81□□□□□ -0.52
CCDC40-212ENST00000574799 CBX1P83916 185 aa11.81□□□□□ -0.52
CCDC40-212ENST00000574799 PDE4CQ08493 712 aa11.81□□□□□ -0.52
CCDC40-212ENST00000574799 WDR63Q8IWG1 891 aa11.81□□□□□ -0.52
CCDC40-212ENST00000574799 PHACTR3Q96KR7 559 aa11.81□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 75.8 ms