RNA–Protein interactions for RNA: ENST00000573309.5

CIITA-209, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 1 (best)

Gene CIITA, Length 3,366 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-209ENST00000573309 UBR1Q8IWV7 1749 aa15.33■□□□□ 0.04
CIITA-209ENST00000573309 NAP1L5Q96NT1 182 aaPredicted RBP15.32■□□□□ 0.04
CIITA-209ENST00000573309 TRIM35Q9UPQ4 493 aa15.32■□□□□ 0.04
CIITA-209ENST00000573309 EIF4A2Q14240 407 aaKnown RBP15.32■□□□□ 0.04
CIITA-209ENST00000573309 CABLES1Q8TDN4 633 aa15.32■□□□□ 0.04
CIITA-209ENST00000573309 NECTIN2Q92692 538 aa15.32■□□□□ 0.04
CIITA-209ENST00000573309 PUS7Q96PZ0 661 aaKnown RBP15.32■□□□□ 0.04
CIITA-209ENST00000573309 ZNF692Q9BU19 519 aaPredicted RBP15.32■□□□□ 0.04
CIITA-209ENST00000573309 PHF8Q9UPP1 1060 aa15.31■□□□□ 0.04
CIITA-209ENST00000573309 VIRMAQ69YN4 1812 aaKnown RBP15.31■□□□□ 0.04
CIITA-209ENST00000573309 BECN1Q14457 450 aa15.31■□□□□ 0.04
CIITA-209ENST00000573309 MAP3K19Q56UN5 1328 aa15.3■□□□□ 0.04
CIITA-209ENST00000573309 ZC3H6P61129 1189 aaKnown RBP15.3■□□□□ 0.04
CIITA-209ENST00000573309 VSIG10Q8N0Z9 540 aa15.3■□□□□ 0.04
CIITA-209ENST00000573309 PLEKHF1Q96S99 279 aa15.3■□□□□ 0.04
CIITA-209ENST00000573309 GZF1Q9H116 711 aaPredicted RBP15.3■□□□□ 0.04
CIITA-209ENST00000573309 TRMT2AQ8IZ69 625 aaKnown RBP15.3■□□□□ 0.04
CIITA-209ENST00000573309 ZNF428Q96B54 188 aa15.3■□□□□ 0.04
CIITA-209ENST00000573309 SMC4Q9NTJ3 1288 aa15.3■□□□□ 0.04
CIITA-209ENST00000573309 IL13P35225 146 aa15.29■□□□□ 0.04
CIITA-209ENST00000573309 SPRYD3Q8NCJ5 442 aa15.29■□□□□ 0.04
CIITA-209ENST00000573309 ZMYND15Q9H091 742 aa15.29■□□□□ 0.04
CIITA-209ENST00000573309 RLBP1P12271 317 aa15.28■□□□□ 0.04
CIITA-209ENST00000573309 FSD2A1L4K1 749 aa15.28■□□□□ 0.04
CIITA-209ENST00000573309 ATP7BP35670 1465 aa15.28■□□□□ 0.04
CIITA-209ENST00000573309 TBC1D2Q9BYX2 928 aa15.28■□□□□ 0.04
CIITA-209ENST00000573309 PNNQ9H307 717 aaKnown RBP15.28■□□□□ 0.04
CIITA-209ENST00000573309 NKTRP30414 1462 aaKnown RBP15.28■□□□□ 0.04
CIITA-209ENST00000573309 GOLGA6L3A6NEY3 463 aa15.27■□□□□ 0.04
CIITA-209ENST00000573309 TSPYL6Q8N831 410 aa15.27■□□□□ 0.04
CIITA-209ENST00000573309 CLCN1P35523 988 aa15.27■□□□□ 0.03
CIITA-209ENST00000573309 LRRC59Q96AG4 307 aaKnown RBP15.27■□□□□ 0.03
CIITA-209ENST00000573309 NINLQ9Y2I6 1382 aa15.26■□□□□ 0.03
CIITA-209ENST00000573309 NSD2O96028 1365 aa15.26■□□□□ 0.03
CIITA-209ENST00000573309 EDC4Q6P2E9 1401 aaKnown RBP15.26■□□□□ 0.03
CIITA-209ENST00000573309 SETD1BQ9UPS6 1966 aaKnown RBP15.26■□□□□ 0.03
CIITA-209ENST00000573309 SIPA1L2Q9P2F8 1722 aaPredicted RBP15.26■□□□□ 0.03
CIITA-209ENST00000573309 PLEKHG3A1L390 1219 aa15.25■□□□□ 0.03
CIITA-209ENST00000573309 GLIPR1L2Q4G1C9 344 aa15.25■□□□□ 0.03
CIITA-209ENST00000573309 CPSF1Q10570 1443 aaKnown RBP15.25■□□□□ 0.03
CIITA-209ENST00000573309 RARSP54136 660 aaKnown RBP15.25■□□□□ 0.03
CIITA-209ENST00000573309 FAM135BQ49AJ0 1406 aa15.25■□□□□ 0.03
CIITA-209ENST00000573309 HSP90AA2PQ14568 343 aaPredicted RBP15.24■□□□□ 0.03
CIITA-209ENST00000573309 SSH1Q8WYL5 1049 aa15.24■□□□□ 0.03
CIITA-209ENST00000573309 MYH16Q9H6N6 1097 aa15.24■□□□□ 0.03
CIITA-209ENST00000573309 FCHSD2O94868 740 aa15.24■□□□□ 0.03
CIITA-209ENST00000573309 FTSJ3Q8IY81 847 aaKnown RBP15.24■□□□□ 0.03
CIITA-209ENST00000573309 HSP90AA1P07900 732 aaKnown RBP15.23■□□□□ 0.03
CIITA-209ENST00000573309 MCM4P33991 863 aa15.23■□□□□ 0.03
CIITA-209ENST00000573309 TBC1D32Q96NH3 1257 aa15.23■□□□□ 0.03
CIITA-209ENST00000573309 CEP170BQ9Y4F5 1589 aaPredicted RBP15.22■□□□□ 0.03
CIITA-209ENST00000573309 USP6P35125 1406 aa15.22■□□□□ 0.03
CIITA-209ENST00000573309 CHRNA2Q15822 529 aa15.22■□□□□ 0.03
CIITA-209ENST00000573309 EYA1Q99502 592 aa15.22■□□□□ 0.03
CIITA-209ENST00000573309 ITPRIPQ8IWB1 547 aa15.22■□□□□ 0.03
CIITA-209ENST00000573309 SIRT1Q96EB6 747 aa15.22■□□□□ 0.03
CIITA-209ENST00000573309 ATF3P18847 181 aa15.21■□□□□ 0.03
CIITA-209ENST00000573309 NFE2L2Q16236 605 aa15.21■□□□□ 0.03
CIITA-209ENST00000573309 NOB1Q9ULX3 412 aaKnown RBP15.21■□□□□ 0.03
CIITA-209ENST00000573309 KDM4FA0A1W2PPD8 638 aa15.21■□□□□ 0.02
CIITA-209ENST00000573309 C1orf115Q9H7X2 142 aa15.21■□□□□ 0.02
CIITA-209ENST00000573309 SETD1AO15047 1707 aaKnown RBP15.2■□□□□ 0.02
CIITA-209ENST00000573309 NPHP4O75161 1426 aaPredicted RBP15.2■□□□□ 0.02
CIITA-209ENST00000573309 ERBB4Q15303 1308 aa15.2■□□□□ 0.02
CIITA-209ENST00000573309 RRP9O43818 475 aaKnown RBP15.19■□□□□ 0.02
CIITA-209ENST00000573309 WDR63Q8IWG1 891 aa15.19■□□□□ 0.02
CIITA-209ENST00000573309 C8orf58Q8NAV2 365 aa15.19■□□□□ 0.02
CIITA-209ENST00000573309 MBIPQ9NS73 344 aa15.19■□□□□ 0.02
CIITA-209ENST00000573309 TECPR2O15040 1411 aa15.19■□□□□ 0.02
CIITA-209ENST00000573309 DLC1Q96QB1 1528 aa15.19■□□□□ 0.02
CIITA-209ENST00000573309 MTHFSDQ2M296 383 aaKnown RBP15.19■□□□□ 0.02
CIITA-209ENST00000573309 TRAK2O60296 914 aa15.18■□□□□ 0.02
CIITA-209ENST00000573309 KRT28Q7Z3Y7 464 aa15.18■□□□□ 0.02
CIITA-209ENST00000573309 ARHGAP23Q9P227 1491 aa15.18■□□□□ 0.02
CIITA-209ENST00000573309 PDE3AQ14432 1141 aa15.18■□□□□ 0.02
CIITA-209ENST00000573309 PCDHB15Q9Y5E8 787 aa15.18■□□□□ 0.02
CIITA-209ENST00000573309 ZNF335Q9H4Z2 1342 aaPredicted RBP15.17■□□□□ 0.02
CIITA-209ENST00000573309 MED14O60244 1454 aa15.17■□□□□ 0.02
CIITA-209ENST00000573309 UPF2Q9HAU5 1272 aaKnown RBP15.16■□□□□ 0.02
CIITA-209ENST00000573309 PDZRN3Q9UPQ7 1066 aa15.16■□□□□ 0.02
CIITA-209ENST00000573309 RGPD8O14715 1765 aaPredicted RBP15.16■□□□□ 0.02
CIITA-209ENST00000573309 TMEM94Q12767 1356 aa15.16■□□□□ 0.02
CIITA-209ENST00000573309 HOXC9P31274 260 aa15.16■□□□□ 0.02
CIITA-209ENST00000573309 HAP1P54257 671 aaPredicted RBP15.16■□□□□ 0.02
CIITA-209ENST00000573309 RTF1Q92541 710 aaKnown RBP15.16■□□□□ 0.02
CIITA-209ENST00000573309 SLIT1O75093 1534 aa15.15■□□□□ 0.02
CIITA-209ENST00000573309 MAP2P11137 1827 aaKnown RBP15.15■□□□□ 0.02
CIITA-209ENST00000573309 SHPRHQ149N8 1683 aa15.15■□□□□ 0.02
CIITA-209ENST00000573309 APBB1O00213 710 aa15.15■□□□□ 0.02
CIITA-209ENST00000573309 TRIM27P14373 513 aa15.15■□□□□ 0.02
CIITA-209ENST00000573309 CSB-PGBD3P0DP91 1061 aa15.14■□□□□ 0.01
CIITA-209ENST00000573309 MRE11P49959 708 aa15.14■□□□□ 0.01
CIITA-209ENST00000573309 NBPF6Q5VWK0 638 aa15.14■□□□□ 0.01
CIITA-209ENST00000573309 NBPF4Q96M43 638 aa15.14■□□□□ 0.01
CIITA-209ENST00000573309 GRPEL1Q9HAV7 217 aa15.14■□□□□ 0.01
CIITA-209ENST00000573309 PNPLA6Q8IY17 1366 aa15.14■□□□□ 0.01
CIITA-209ENST00000573309 DIP2AQ14689 1571 aa15.14■□□□□ 0.01
CIITA-209ENST00000573309 ESPNB1AK53 854 aa15.13■□□□□ 0.01
CIITA-209ENST00000573309 GCP02774 474 aa15.13■□□□□ 0.01
CIITA-209ENST00000573309 TWISTNBQ3B726 338 aaPredicted RBP15.13■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms