RNA–Protein interactions for RNA: ENST00000570023.1

VPS39-212, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 337 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-212ENST00000570023 AXIN1O15169 862 aa6.54□□□□□ -1.36
VPS39-212ENST00000570023 ST8SIA5O15466 376 aa6.54□□□□□ -1.36
VPS39-212ENST00000570023 EIF5BO60841 1220 aaKnown RBP6.54□□□□□ -1.36
VPS39-212ENST00000570023 NR3C2P08235 984 aa6.54□□□□□ -1.36
VPS39-212ENST00000570023 DZIP3Q86Y13 1208 aaKnown RBP6.54□□□□□ -1.36
VPS39-212ENST00000570023 KCTD15Q96SI1 283 aaPredicted RBP6.54□□□□□ -1.36
VPS39-212ENST00000570023 COG6Q9Y2V7 657 aa6.54□□□□□ -1.36
VPS39-212ENST00000570023 ESPNB1AK53 854 aa6.53□□□□□ -1.36
VPS39-212ENST00000570023 NBPF20Q3BBV1 942 aa6.53□□□□□ -1.36
VPS39-212ENST00000570023 ZNF592Q92610 1267 aa6.53□□□□□ -1.36
VPS39-212ENST00000570023 ZNF330Q9Y3S2 320 aaPredicted RBP6.53□□□□□ -1.36
VPS39-212ENST00000570023 TIMP2P16035 220 aa6.52□□□□□ -1.37
VPS39-212ENST00000570023 FSHRP23945 695 aa6.52□□□□□ -1.37
VPS39-212ENST00000570023 CAPN5O15484 640 aaPredicted RBP6.51□□□□□ -1.37
VPS39-212ENST00000570023 ABL2P42684 1182 aa6.51□□□□□ -1.37
VPS39-212ENST00000570023 WDR4P57081 412 aaKnown RBP6.51□□□□□ -1.37
VPS39-212ENST00000570023 WASHC4Q2M389 1173 aa6.51□□□□□ -1.37
VPS39-212ENST00000570023 CCDC125Q86Z20 511 aa6.51□□□□□ -1.37
VPS39-212ENST00000570023 SEPT12Q8IYM1 358 aa6.51□□□□□ -1.37
VPS39-212ENST00000570023 CCDC116Q8IYX3 515 aa6.51□□□□□ -1.37
VPS39-212ENST00000570023 DACH1Q9UI36 760 aa6.51□□□□□ -1.37
VPS39-212ENST00000570023 PCDHB9Q9Y5E1 797 aa6.51□□□□□ -1.37
VPS39-212ENST00000570023 ZIC2O95409 532 aaPredicted RBP6.5□□□□□ -1.37
VPS39-212ENST00000570023 UBTFP17480 764 aaKnown RBP6.5□□□□□ -1.37
VPS39-212ENST00000570023 DHX9Q08211 1270 aaKnown RBP6.5□□□□□ -1.37
VPS39-212ENST00000570023 INTS6LQ5JSJ4 861 aaKnown RBP6.5□□□□□ -1.37
VPS39-212ENST00000570023 ITPKCQ96DU7 683 aa6.5□□□□□ -1.37
VPS39-212ENST00000570023 POM121Q96HA1 1249 aa6.5□□□□□ -1.37
VPS39-212ENST00000570023 EMILIN1Q9Y6C2 1016 aa6.5□□□□□ -1.37
VPS39-212ENST00000570023 RAD21O60216 631 aa6.49□□□□□ -1.37
VPS39-212ENST00000570023 GIGYF1O75420 1035 aaPredicted RBP6.49□□□□□ -1.37
VPS39-212ENST00000570023 EIF4G2P78344 907 aaKnown RBP eCLIP6.49□□□□□ -1.37
VPS39-212ENST00000570023 PPP1R26Q5T8A7 1209 aaPredicted RBP6.49□□□□□ -1.37
VPS39-212ENST00000570023 ATP13A2Q9NQ11 1180 aa6.49□□□□□ -1.37
VPS39-212ENST00000570023 ZFAND3Q9H8U3 227 aa6.48□□□□□ -1.37
VPS39-212ENST00000570023 PGPEP1Q9NXJ5 209 aa6.48□□□□□ -1.37
VPS39-212ENST00000570023 CEP126Q9P2H0 1117 aa6.48□□□□□ -1.37
VPS39-212ENST00000570023 ERVH48-1M5A8F1 160 aa6.47□□□□□ -1.37
VPS39-212ENST00000570023 SOX11P35716 441 aa6.47□□□□□ -1.37
VPS39-212ENST00000570023 VAC14Q08AM6 782 aa6.47□□□□□ -1.37
VPS39-212ENST00000570023 RNF20Q5VTR2 975 aa6.47□□□□□ -1.37
VPS39-212ENST00000570023 Q6ZVU0 165 aa6.47□□□□□ -1.37
VPS39-212ENST00000570023 A6NJR5 290 aa6.46□□□□□ -1.38
VPS39-212ENST00000570023 TRIM46Q7Z4K8 759 aa6.46□□□□□ -1.38
VPS39-212ENST00000570023 WWC1Q8IX03 1113 aa6.46□□□□□ -1.38
VPS39-212ENST00000570023 FNBP4Q8N3X1 1017 aaPredicted RBP6.46□□□□□ -1.38
VPS39-212ENST00000570023 MEIOBQ8N635 442 aa6.46□□□□□ -1.38
VPS39-212ENST00000570023 POTECB2RU33 542 aa6.45□□□□□ -1.38
VPS39-212ENST00000570023 LILRA1O75019 489 aa6.45□□□□□ -1.38
VPS39-212ENST00000570023 MRPL14Q6P1L8 145 aaKnown RBP6.45□□□□□ -1.38
VPS39-212ENST00000570023 PHTF2Q8N3S3 785 aa6.45□□□□□ -1.38
VPS39-212ENST00000570023 TRIM52Q96A61 297 aa6.45□□□□□ -1.38
VPS39-212ENST00000570023 SENP2Q9HC62 589 aa6.45□□□□□ -1.38
VPS39-212ENST00000570023 BMP1P13497 986 aa6.44□□□□□ -1.38
VPS39-212ENST00000570023 ZNF787Q6DD87 383 aa6.44□□□□□ -1.38
VPS39-212ENST00000570023 ZNF784Q8NCA9 323 aaPredicted RBP6.44□□□□□ -1.38
VPS39-212ENST00000570023 CLUAP1Q96AJ1 413 aa6.44□□□□□ -1.38
VPS39-212ENST00000570023 TRIM47Q96LD4 638 aa6.44□□□□□ -1.38
VPS39-212ENST00000570023 ALG2Q9H553 416 aa6.44□□□□□ -1.38
VPS39-212ENST00000570023 TMPRSS4Q9NRS4 437 aa6.44□□□□□ -1.38
VPS39-212ENST00000570023 GMPR2Q9P2T1 348 aaKnown RBP6.44□□□□□ -1.38
VPS39-212ENST00000570023 CHIC2Q9UKJ5 165 aa6.44□□□□□ -1.38
VPS39-212ENST00000570023 RAB15P59190 212 aa6.43□□□□□ -1.38
VPS39-212ENST00000570023 KIFC2Q96AC6 838 aa6.43□□□□□ -1.38
VPS39-212ENST00000570023 TSEN34Q9BSV6 310 aaKnown RBP6.43□□□□□ -1.38
VPS39-212ENST00000570023 ADD1P35611 737 aaKnown RBP6.42□□□□□ -1.38
VPS39-212ENST00000570023 ERVK-9P63128 1117 aa6.42□□□□□ -1.38
VPS39-212ENST00000570023 CBLBQ13191 982 aa6.42□□□□□ -1.38
VPS39-212ENST00000570023 SEMA3FQ13275 785 aa6.42□□□□□ -1.38
VPS39-212ENST00000570023 SCARF1Q14162 830 aa6.42□□□□□ -1.38
VPS39-212ENST00000570023 PROSER2Q86WR7 435 aaPredicted RBP6.42□□□□□ -1.38
VPS39-212ENST00000570023 ZFP42Q96MM3 310 aa6.42□□□□□ -1.38
VPS39-212ENST00000570023 GTF3C3Q9Y5Q9 886 aa6.42□□□□□ -1.38
VPS39-212ENST00000570023 C11orf95C9JLR9 678 aaPredicted RBP6.41□□□□□ -1.38
VPS39-212ENST00000570023 SLFNL1Q499Z3 407 aa6.41□□□□□ -1.38
VPS39-212ENST00000570023 LINC00528Q8N1L1 170 aa6.41□□□□□ -1.38
VPS39-212ENST00000570023 CCDC85AQ96PX6 553 aaPredicted RBP6.41□□□□□ -1.38
VPS39-212ENST00000570023 UPP2O95045 317 aa6.4□□□□□ -1.38
VPS39-212ENST00000570023 SNRPBP14678 240 aaKnown RBP6.4□□□□□ -1.38
VPS39-212ENST00000570023 KDF1Q8NAX2 398 aaPredicted RBP6.4□□□□□ -1.38
VPS39-212ENST00000570023 PURBQ96QR8 312 aaKnown RBP6.4□□□□□ -1.38
VPS39-212ENST00000570023 ANP32EQ9BTT0 268 aa6.4□□□□□ -1.38
VPS39-212ENST00000570023 PCDHB11Q9Y5F2 797 aa6.4□□□□□ -1.38
VPS39-212ENST00000570023 POM121CA8CG34 1229 aa6.39□□□□□ -1.39
VPS39-212ENST00000570023 SPINT1O43278 529 aa6.39□□□□□ -1.39
VPS39-212ENST00000570023 ADH1AP07327 375 aa6.39□□□□□ -1.39
VPS39-212ENST00000570023 TSGA10IPQ3SY00 556 aa6.39□□□□□ -1.39
VPS39-212ENST00000570023 CC2D2BQ6DHV5 1058 aa6.39□□□□□ -1.39
VPS39-212ENST00000570023 RNF135Q8IUD6 432 aa6.39□□□□□ -1.39
VPS39-212ENST00000570023 NFATC2IPQ8NCF5 419 aa6.39□□□□□ -1.39
VPS39-212ENST00000570023 ADAMTS19Q8TE59 1207 aa6.39□□□□□ -1.39
VPS39-212ENST00000570023 UBE2Q2Q8WVN8 375 aa6.39□□□□□ -1.39
VPS39-212ENST00000570023 CYLDQ9NQC7 956 aa6.39□□□□□ -1.39
VPS39-212ENST00000570023 ACIN1Q9UKV3 1341 aaKnown RBP6.39□□□□□ -1.39
VPS39-212ENST00000570023 TRAK2O60296 914 aa6.38□□□□□ -1.39
VPS39-212ENST00000570023 BMP2P12643 396 aa6.38□□□□□ -1.39
VPS39-212ENST00000570023 PTGIRP43119 386 aa6.38□□□□□ -1.39
VPS39-212ENST00000570023 SCTRP47872 440 aa6.38□□□□□ -1.39
VPS39-212ENST00000570023 MAP7D1Q3KQU3 841 aa6.38□□□□□ -1.39
VPS39-212ENST00000570023 HDGFL1Q5TGJ6 251 aa6.38□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 61.1 ms