RNA–Protein interactions for RNA: ENST00000568153.1

CAPN3-218, Transcript of calpain 3, humanhuman

TSL 5

Gene CAPN3, Length 598 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN3-218ENST00000568153 RETREG3Q86VR2 466 aa9.03□□□□□ -0.96
CAPN3-218ENST00000568153 FCF1Q9Y324 198 aaKnown RBP9.03□□□□□ -0.96
CAPN3-218ENST00000568153 MIA2Q96PC5 1412 aa9.03□□□□□ -0.96
CAPN3-218ENST00000568153 ABCA8O94911 1581 aa9.03□□□□□ -0.96
CAPN3-218ENST00000568153 SHROOM2Q13796 1616 aa9.02□□□□□ -0.96
CAPN3-218ENST00000568153 NUTM2BA6NNL0 878 aaPredicted RBP9.02□□□□□ -0.97
CAPN3-218ENST00000568153 NUTM2EB1AL46 878 aaPredicted RBP9.02□□□□□ -0.97
CAPN3-218ENST00000568153 NUTM2DQ5VT03 806 aaPredicted RBP9.02□□□□□ -0.97
CAPN3-218ENST00000568153 NUTM2AQ8IVF1 878 aaPredicted RBP9.02□□□□□ -0.97
CAPN3-218ENST00000568153 MAGI3Q5TCQ9 1506 aa9.01□□□□□ -0.97
CAPN3-218ENST00000568153 SPDYE5A6NIY4 337 aa9.01□□□□□ -0.97
CAPN3-218ENST00000568153 CFAP99D6REC4 459 aa9.01□□□□□ -0.97
CAPN3-218ENST00000568153 IRX2Q9BZI1 471 aaPredicted RBP9.01□□□□□ -0.97
CAPN3-218ENST00000568153 SETD5Q9C0A6 1442 aa9.01□□□□□ -0.97
CAPN3-218ENST00000568153 ZNF777Q9ULD5 760 aaPredicted RBP9.01□□□□□ -0.97
CAPN3-218ENST00000568153 SPRYD7Q5W111 196 aa9□□□□□ -0.97
CAPN3-218ENST00000568153 PRR7Q8TB68 274 aa9□□□□□ -0.97
CAPN3-218ENST00000568153 ARHGEF11O15085 1522 aa9□□□□□ -0.97
CAPN3-218ENST00000568153 ERCC6L2Q5T890 1561 aa8.99□□□□□ -0.97
CAPN3-218ENST00000568153 JUNDP17535 347 aa8.99□□□□□ -0.97
CAPN3-218ENST00000568153 RFC5P40937 340 aa8.99□□□□□ -0.97
CAPN3-218ENST00000568153 CHIC2Q9UKJ5 165 aa8.99□□□□□ -0.97
CAPN3-218ENST00000568153 SUPT6HQ7KZ85 1726 aaKnown RBP8.99□□□□□ -0.97
CAPN3-218ENST00000568153 ZNF644Q9H582 1327 aaPredicted RBP8.99□□□□□ -0.97
CAPN3-218ENST00000568153 UHRF1BP1LA0JNW5 1464 aa8.98□□□□□ -0.97
CAPN3-218ENST00000568153 CLSPNQ9HAW4 1339 aa8.98□□□□□ -0.97
CAPN3-218ENST00000568153 RPIAP49247 311 aa8.97□□□□□ -0.97
CAPN3-218ENST00000568153 ACIN1Q9UKV3 1341 aaKnown RBP8.97□□□□□ -0.97
CAPN3-218ENST00000568153 RAB3GAP2Q9H2M9 1393 aa8.97□□□□□ -0.97
CAPN3-218ENST00000568153 LRRIQ1Q96JM4 1722 aa8.97□□□□□ -0.97
CAPN3-218ENST00000568153 GPATCH8Q9UKJ3 1502 aaKnown RBP8.96□□□□□ -0.97
CAPN3-218ENST00000568153 TSPY4P0CV99 314 aa8.96□□□□□ -0.98
CAPN3-218ENST00000568153 TSPY10P0CW01 314 aa8.96□□□□□ -0.98
CAPN3-218ENST00000568153 TRIM67Q6ZTA4 783 aa8.96□□□□□ -0.98
CAPN3-218ENST00000568153 ZNF598Q86UK7 904 aaKnown RBP8.96□□□□□ -0.98
CAPN3-218ENST00000568153 TSC1Q92574 1164 aa8.96□□□□□ -0.98
CAPN3-218ENST00000568153 RRP7BPQ9NSQ0 103 aa8.96□□□□□ -0.98
CAPN3-218ENST00000568153 TCOF1Q13428 1488 aaKnown RBP8.96□□□□□ -0.98
CAPN3-218ENST00000568153 ABCC2Q92887 1545 aa8.95□□□□□ -0.98
CAPN3-218ENST00000568153 EFCAB2Q5VUJ9 269 aa8.95□□□□□ -0.98
CAPN3-218ENST00000568153 PTPRKQ15262 1439 aa8.95□□□□□ -0.98
CAPN3-218ENST00000568153 HNRNPMP52272 730 aaKnown RBP eCLIP8.94□□□□□ -0.98
CAPN3-218ENST00000568153 ZNF697Q5TEC3 545 aa8.94□□□□□ -0.98
CAPN3-218ENST00000568153 DESI1Q6ICB0 168 aa8.94□□□□□ -0.98
CAPN3-218ENST00000568153 DHX57Q6P158 1386 aaKnown RBP8.94□□□□□ -0.98
CAPN3-218ENST00000568153 KDM5BQ9UGL1 1544 aa8.94□□□□□ -0.98
CAPN3-218ENST00000568153 AP1G2O75843 785 aa8.93□□□□□ -0.98
CAPN3-218ENST00000568153 CTDSPL2Q05D32 466 aa8.93□□□□□ -0.98
CAPN3-218ENST00000568153 CYB5RLQ6IPT4 315 aa8.93□□□□□ -0.98
CAPN3-218ENST00000568153 HELBQ8NG08 1087 aaPredicted RBP8.93□□□□□ -0.98
CAPN3-218ENST00000568153 PTPN23Q9H3S7 1636 aa8.92□□□□□ -0.98
CAPN3-218ENST00000568153 ABCC10Q5T3U5 1492 aa8.92□□□□□ -0.98
CAPN3-218ENST00000568153 PER1O15534 1290 aaPredicted RBP8.92□□□□□ -0.98
CAPN3-218ENST00000568153 GFRA3O60609 400 aa8.92□□□□□ -0.98
CAPN3-218ENST00000568153 TMEM259Q4ZIN3 620 aa8.92□□□□□ -0.98
CAPN3-218ENST00000568153 TRIM52Q96A61 297 aa8.92□□□□□ -0.98
CAPN3-218ENST00000568153 HFM1A2PYH4 1435 aa8.91□□□□□ -0.98
CAPN3-218ENST00000568153 ABCC5O15440 1437 aa8.91□□□□□ -0.98
CAPN3-218ENST00000568153 ROCK1Q13464 1354 aa8.91□□□□□ -0.98
CAPN3-218ENST00000568153 NRG2O14511 850 aaPredicted RBP8.91□□□□□ -0.98
CAPN3-218ENST00000568153 LAPTM4AQ15012 233 aa8.91□□□□□ -0.98
CAPN3-218ENST00000568153 PTPRNQ16849 979 aa8.91□□□□□ -0.98
CAPN3-218ENST00000568153 NUDT12Q9BQG2 462 aa8.91□□□□□ -0.98
CAPN3-218ENST00000568153 PDZRN3Q9UPQ7 1066 aa8.91□□□□□ -0.98
CAPN3-218ENST00000568153 GDF9O60383 454 aa8.9□□□□□ -0.98
CAPN3-218ENST00000568153 USP17L8P0C7I0 530 aa8.9□□□□□ -0.98
CAPN3-218ENST00000568153 PRR20EP86478 221 aa8.9□□□□□ -0.98
CAPN3-218ENST00000568153 PRR20CP86479 221 aa8.9□□□□□ -0.98
CAPN3-218ENST00000568153 PRR20DP86480 221 aa8.9□□□□□ -0.98
CAPN3-218ENST00000568153 PRR20BP86481 221 aa8.9□□□□□ -0.98
CAPN3-218ENST00000568153 PRR20AP86496 221 aa8.9□□□□□ -0.98
CAPN3-218ENST00000568153 TRIM32Q13049 653 aa8.9□□□□□ -0.98
CAPN3-218ENST00000568153 LYPD8Q6UX82 237 aa8.9□□□□□ -0.98
CAPN3-218ENST00000568153 CCDC24Q8N4L8 307 aa8.9□□□□□ -0.98
CAPN3-218ENST00000568153 PKD2L1Q9P0L9 805 aa8.9□□□□□ -0.98
CAPN3-218ENST00000568153 GTF3C3Q9Y5Q9 886 aa8.9□□□□□ -0.98
CAPN3-218ENST00000568153 DAPK1P53355 1430 aa8.89□□□□□ -0.99
CAPN3-218ENST00000568153 NAIPQ13075 1403 aa8.89□□□□□ -0.99
CAPN3-218ENST00000568153 ZBTB24O43167 697 aaPredicted RBP8.89□□□□□ -0.99
CAPN3-218ENST00000568153 CD2BP2O95400 341 aaKnown RBP8.89□□□□□ -0.99
CAPN3-218ENST00000568153 CCNYL3P0C7X3 344 aa8.89□□□□□ -0.99
CAPN3-218ENST00000568153 BANK1Q8NDB2 785 aa8.89□□□□□ -0.99
CAPN3-218ENST00000568153 LRRN4Q8WUT4 740 aa8.89□□□□□ -0.99
CAPN3-218ENST00000568153 PLCH2O75038 1416 aa8.88□□□□□ -0.99
CAPN3-218ENST00000568153 AKNAQ7Z591 1439 aa8.88□□□□□ -0.99
CAPN3-218ENST00000568153 ANKRD30AQ9BXX3 1397 aa8.88□□□□□ -0.99
CAPN3-218ENST00000568153 KIF14Q15058 1648 aa8.88□□□□□ -0.99
CAPN3-218ENST00000568153 PTCRAQ6ISU1 281 aaPredicted RBP8.88□□□□□ -0.99
CAPN3-218ENST00000568153 SNRKQ9NRH2 765 aa8.88□□□□□ -0.99
CAPN3-218ENST00000568153 HMX1Q9NP08 348 aaPredicted RBP8.87□□□□□ -0.99
CAPN3-218ENST00000568153 EVA1BQ9NVM1 165 aa8.87□□□□□ -0.99
CAPN3-218ENST00000568153 TIMELESSQ9UNS1 1208 aa8.87□□□□□ -0.99
CAPN3-218ENST00000568153 ADCY10Q96PN6 1610 aa8.87□□□□□ -0.99
CAPN3-218ENST00000568153 CAMSAP2Q08AD1 1489 aa8.86□□□□□ -0.99
CAPN3-218ENST00000568153 TNFRSF10AO00220 468 aa8.86□□□□□ -0.99
CAPN3-218ENST00000568153 NEUROD1Q13562 356 aa8.86□□□□□ -0.99
CAPN3-218ENST00000568153 MPHOSPH9Q99550 1183 aa8.86□□□□□ -0.99
CAPN3-218ENST00000568153 NCOA1Q15788 1441 aa8.86□□□□□ -0.99
CAPN3-218ENST00000568153 ASXL2Q76L83 1435 aa8.86□□□□□ -0.99
CAPN3-218ENST00000568153 KIAA1107Q9UPP5 1409 aa8.86□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms