RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 TONSLQ96HA7 1378 aa24.34■■□□□ 1.49
CLN3-216ENST00000565316 USP31Q70CQ4 1352 aa24.33■■□□□ 1.49
CLN3-216ENST00000565316 CD163L1Q9NR16 1453 aa24.33■■□□□ 1.49
CLN3-216ENST00000565316 PEAK1Q9H792 1746 aa24.32■■□□□ 1.48
CLN3-216ENST00000565316 MON2Q7Z3U7 1717 aa24.32■■□□□ 1.48
CLN3-216ENST00000565316 CDCA7Q9BWT1 371 aaPredicted RBP24.32■■□□□ 1.48
CLN3-216ENST00000565316 OVOS2A0A0G2JMS6 1433 aa24.31■■□□□ 1.48
CLN3-216ENST00000565316 OVOS2A0A0J9YW53 1432 aa24.31■■□□□ 1.48
CLN3-216ENST00000565316 OVOS2Q6IE36 1432 aa24.31■■□□□ 1.48
CLN3-216ENST00000565316 DDB1Q16531 1140 aa24.31■■□□□ 1.48
CLN3-216ENST00000565316 PUS7Q96PZ0 661 aaKnown RBP24.31■■□□□ 1.48
CLN3-216ENST00000565316 CARD10Q9BWT7 1032 aa24.31■■□□□ 1.48
CLN3-216ENST00000565316 ABCC6O95255 1503 aa24.3■■□□□ 1.48
CLN3-216ENST00000565316 LRRC37A3O60309 1634 aa24.3■■□□□ 1.48
CLN3-216ENST00000565316 RREB1Q92766 1687 aa24.3■■□□□ 1.48
CLN3-216ENST00000565316 SOX12O15370 315 aa24.3■■□□□ 1.48
CLN3-216ENST00000565316 USP54Q70EL1 1684 aa24.28■■□□□ 1.48
CLN3-216ENST00000565316 SUGP2Q8IX01 1082 aaKnown RBP eCLIP24.28■■□□□ 1.48
CLN3-216ENST00000565316 SLC12A5Q9H2X9 1139 aa24.28■■□□□ 1.48
CLN3-216ENST00000565316 BCL9O00512 1426 aa24.27■■□□□ 1.48
CLN3-216ENST00000565316 HDGFL2Q7Z4V5 671 aaPredicted RBP24.26■■□□□ 1.47
CLN3-216ENST00000565316 NME9Q86XW9 330 aa24.26■■□□□ 1.47
CLN3-216ENST00000565316 MARCH10Q8NA82 808 aaPredicted RBP24.26■■□□□ 1.47
CLN3-216ENST00000565316 TMC1Q8TDI8 760 aa24.26■■□□□ 1.47
CLN3-216ENST00000565316 NUP188Q5SRE5 1749 aa24.25■■□□□ 1.47
CLN3-216ENST00000565316 CSB-PGBD3P0DP91 1061 aa24.25■■□□□ 1.47
CLN3-216ENST00000565316 WNK3Q9BYP7 1800 aa24.25■■□□□ 1.47
CLN3-216ENST00000565316 RGPD5Q99666 1765 aa24.25■■□□□ 1.47
CLN3-216ENST00000565316 EDC4Q6P2E9 1401 aaKnown RBP24.25■■□□□ 1.47
CLN3-216ENST00000565316 PLSCR1O15162 318 aa24.24■■□□□ 1.47
CLN3-216ENST00000565316 NBPF14Q5TI25 921 aa24.24■■□□□ 1.47
CLN3-216ENST00000565316 CCDC7Q96M83 1385 aa24.23■■□□□ 1.47
CLN3-216ENST00000565316 TESK2Q96S53 571 aa24.23■■□□□ 1.47
CLN3-216ENST00000565316 BCL11BQ9C0K0 894 aaPredicted RBP24.23■■□□□ 1.47
CLN3-216ENST00000565316 TERF2IPQ9NYB0 399 aa24.23■■□□□ 1.47
CLN3-216ENST00000565316 A0A1W2PP64 1363 aa24.22■■□□□ 1.47
CLN3-216ENST00000565316 SBF2Q86WG5 1849 aa24.21■■□□□ 1.47
CLN3-216ENST00000565316 PTF1AQ7RTS3 328 aa24.2■■□□□ 1.46
CLN3-216ENST00000565316 ERBB3P21860 1342 aa24.2■■□□□ 1.46
CLN3-216ENST00000565316 RGPD3A6NKT7 1758 aaPredicted RBP24.19■■□□□ 1.46
CLN3-216ENST00000565316 RGPD4Q7Z3J3 1758 aa24.19■■□□□ 1.46
CLN3-216ENST00000565316 ST20-MTHFSA0A0A6YYL1 179 aa24.19■■□□□ 1.46
CLN3-216ENST00000565316 EXOC5O00471 708 aa24.19■■□□□ 1.46
CLN3-216ENST00000565316 SLC24A1O60721 1099 aa24.18■■□□□ 1.46
CLN3-216ENST00000565316 TRIM26Q12899 539 aaPredicted RBP24.18■■□□□ 1.46
CLN3-216ENST00000565316 NINLQ9Y2I6 1382 aa24.18■■□□□ 1.46
CLN3-216ENST00000565316 TNS2Q63HR2 1409 aa24.15■■□□□ 1.46
CLN3-216ENST00000565316 PROM2Q8N271 834 aa24.13■■□□□ 1.45
CLN3-216ENST00000565316 ANKRD24Q8TF21 1146 aa24.13■■□□□ 1.45
CLN3-216ENST00000565316 NLRP2Q9NX02 1062 aa24.13■■□□□ 1.45
CLN3-216ENST00000565316 LTN1O94822 1766 aa24.13■■□□□ 1.45
CLN3-216ENST00000565316 IP6K1Q92551 441 aa24.1■■□□□ 1.45
CLN3-216ENST00000565316 IL2RBP14784 551 aa24.1■■□□□ 1.45
CLN3-216ENST00000565316 ANO8Q9HCE9 1232 aaPredicted RBP24.1■■□□□ 1.45
CLN3-216ENST00000565316 KCNQ2O43526 872 aa24.08■■□□□ 1.44
CLN3-216ENST00000565316 SPON1Q9HCB6 807 aa24.08■■□□□ 1.44
CLN3-216ENST00000565316 ANKRD36BQ8N2N9 1353 aa24.06■■□□□ 1.44
CLN3-216ENST00000565316 COG3Q96JB2 828 aa24.06■■□□□ 1.44
CLN3-216ENST00000565316 TXNRD1Q16881 649 aa24.05■■□□□ 1.44
CLN3-216ENST00000565316 USP47Q96K76 1375 aa24.05■■□□□ 1.44
CLN3-216ENST00000565316 NHSQ6T4R5 1651 aa24.03■■□□□ 1.44
CLN3-216ENST00000565316 MAP3K19Q56UN5 1328 aa24.03■■□□□ 1.44
CLN3-216ENST00000565316 TMF1P82094 1093 aa24.03■■□□□ 1.44
CLN3-216ENST00000565316 CASZ1Q86V15 1759 aa24.01■■□□□ 1.43
CLN3-216ENST00000565316 ACSBG1Q96GR2 724 aa24.01■■□□□ 1.43
CLN3-216ENST00000565316 HOXC9P31274 260 aa24■■□□□ 1.43
CLN3-216ENST00000565316 FAM208AQ9UK61 1670 aaKnown RBP24■■□□□ 1.43
CLN3-216ENST00000565316 FYB1O15117 783 aa23.99■■□□□ 1.43
CLN3-216ENST00000565316 FBLN1P23142 703 aa23.99■■□□□ 1.43
CLN3-216ENST00000565316 LTV1Q96GA3 475 aaPredicted RBP23.99■■□□□ 1.43
CLN3-216ENST00000565316 PDGFDQ9GZP0 370 aaPredicted RBP23.99■■□□□ 1.43
CLN3-216ENST00000565316 STK32BQ9NY57 414 aa23.99■■□□□ 1.43
CLN3-216ENST00000565316 SLC15A2Q16348 729 aa23.98■■□□□ 1.43
CLN3-216ENST00000565316 AMPHP49418 695 aa23.97■■□□□ 1.43
CLN3-216ENST00000565316 PPP1R1BQ9UD71 204 aaPredicted RBP23.97■■□□□ 1.43
CLN3-216ENST00000565316 TIMELESSQ9UNS1 1208 aa23.97■■□□□ 1.43
CLN3-216ENST00000565316 CDCA8Q53HL2 280 aa23.96■■□□□ 1.43
CLN3-216ENST00000565316 RTL1A6NKG5 1358 aa23.96■■□□□ 1.43
CLN3-216ENST00000565316 GGNBP2Q9H3C7 697 aa23.94■■□□□ 1.42
CLN3-216ENST00000565316 ZBTB7AO95365 584 aa23.92■■□□□ 1.42
CLN3-216ENST00000565316 PTGER2P43116 358 aa23.92■■□□□ 1.42
CLN3-216ENST00000565316 RRS1Q15050 365 aaKnown RBP23.92■■□□□ 1.42
CLN3-216ENST00000565316 DDX54Q8TDD1 881 aaKnown RBP23.92■■□□□ 1.42
CLN3-216ENST00000565316 BTAF1O14981 1849 aa23.92■■□□□ 1.42
CLN3-216ENST00000565316 PAPPAQ13219 1627 aa23.91■■□□□ 1.42
CLN3-216ENST00000565316 CLSPNQ9HAW4 1339 aa23.9■■□□□ 1.42
CLN3-216ENST00000565316 NBPF6Q5VWK0 638 aa23.88■■□□□ 1.41
CLN3-216ENST00000565316 ZCRB1Q8TBF4 217 aaKnown RBP23.88■■□□□ 1.41
CLN3-216ENST00000565316 NBPF4Q96M43 638 aa23.88■■□□□ 1.41
CLN3-216ENST00000565316 CARD14Q9BXL6 1004 aa23.88■■□□□ 1.41
CLN3-216ENST00000565316 LRRC4BQ9NT99 713 aa23.88■■□□□ 1.41
CLN3-216ENST00000565316 MEGF6O75095 1541 aa23.88■■□□□ 1.41
CLN3-216ENST00000565316 MTFR1LQ9H019 292 aa23.87■■□□□ 1.41
CLN3-216ENST00000565316 ATF5Q9Y2D1 282 aaPredicted RBP23.87■■□□□ 1.41
CLN3-216ENST00000565316 KIF24Q5T7B8 1368 aa23.87■■□□□ 1.41
CLN3-216ENST00000565316 CGNL1Q0VF96 1302 aa23.86■■□□□ 1.41
CLN3-216ENST00000565316 RGPD2P0DJD1 1756 aa23.86■■□□□ 1.41
CLN3-216ENST00000565316 INSRP06213 1382 aa23.86■■□□□ 1.41
CLN3-216ENST00000565316 SLC27A3Q5K4L6 730 aa23.85■■□□□ 1.41
CLN3-216ENST00000565316 SGIP1Q9BQI5 828 aa23.85■■□□□ 1.41
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms