RNA–Protein interactions for RNA: ENST00000564228.5

TCF4-222, Transcript of transcription factor 4, humanhuman

TSL 1 (best) BASIC

Gene TCF4, Length 1,915 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCF4-222ENST00000564228 USP6P35125 1406 aa14.1□□□□□ -0.15
TCF4-222ENST00000564228 GOLGA6L2Q8N9W4 650 aaPredicted RBP14.1□□□□□ -0.15
TCF4-222ENST00000564228 POLR3AO14802 1390 aaPredicted RBP14.1□□□□□ -0.15
TCF4-222ENST00000564228 PHF8Q9UPP1 1060 aa14.09□□□□□ -0.15
TCF4-222ENST00000564228 DCCP43146 1447 aa14.09□□□□□ -0.15
TCF4-222ENST00000564228 USP19O94966 1318 aa14.09□□□□□ -0.15
TCF4-222ENST00000564228 NME9Q86XW9 330 aa14.09□□□□□ -0.15
TCF4-222ENST00000564228 ORAI2Q96SN7 254 aa14.08□□□□□ -0.16
TCF4-222ENST00000564228 C1orf167Q5SNV9 1468 aa14.08□□□□□ -0.16
TCF4-222ENST00000564228 MAP2P11137 1827 aaKnown RBP14.08□□□□□ -0.16
TCF4-222ENST00000564228 GOLGA6L3A6NEY3 463 aa14.07□□□□□ -0.16
TCF4-222ENST00000564228 MST1RQ04912 1400 aa14.07□□□□□ -0.16
TCF4-222ENST00000564228 C20orf194Q5TEA3 1177 aa14.07□□□□□ -0.16
TCF4-222ENST00000564228 CADPS2Q86UW7 1296 aa14.07□□□□□ -0.16
TCF4-222ENST00000564228 ANTXR1Q9H6X2 564 aa14.07□□□□□ -0.16
TCF4-222ENST00000564228 KIF1AQ12756 1690 aa14.07□□□□□ -0.16
TCF4-222ENST00000564228 TTC21BQ7Z4L5 1316 aa14.07□□□□□ -0.16
TCF4-222ENST00000564228 XRCC6P12956 609 aaKnown RBP eCLIP14.06□□□□□ -0.16
TCF4-222ENST00000564228 ZRANB1Q9UGI0 708 aa14.06□□□□□ -0.16
TCF4-222ENST00000564228 PLCB2Q00722 1185 aa14.05□□□□□ -0.16
TCF4-222ENST00000564228 ISY1Q9ULR0 285 aaKnown RBP14.05□□□□□ -0.16
TCF4-222ENST00000564228 MAPK8IP3Q9UPT6 1336 aa14.05□□□□□ -0.16
TCF4-222ENST00000564228 FOXO3O43524 673 aa14.04□□□□□ -0.16
TCF4-222ENST00000564228 PSME1Q06323 249 aa14.04□□□□□ -0.16
TCF4-222ENST00000564228 COG3Q96JB2 828 aa14.04□□□□□ -0.16
TCF4-222ENST00000564228 PIK3C2AO00443 1686 aa14.04□□□□□ -0.16
TCF4-222ENST00000564228 SSH2Q76I76 1423 aa14.04□□□□□ -0.16
TCF4-222ENST00000564228 TPM2P07951 284 aa14.03□□□□□ -0.16
TCF4-222ENST00000564228 XPCQ01831 940 aaPredicted RBP14.03□□□□□ -0.16
TCF4-222ENST00000564228 TTC21AQ8NDW8 1320 aa14.03□□□□□ -0.16
TCF4-222ENST00000564228 MRE11P49959 708 aa14.02□□□□□ -0.16
TCF4-222ENST00000564228 LTBP4Q8N2S1 1624 aa14.02□□□□□ -0.17
TCF4-222ENST00000564228 RGS3P49796 1198 aa14.02□□□□□ -0.17
TCF4-222ENST00000564228 MTHFSP49914 203 aa14.02□□□□□ -0.17
TCF4-222ENST00000564228 FBLN1P23142 703 aa14.01□□□□□ -0.17
TCF4-222ENST00000564228 DUSP27Q5VZP5 1158 aa14.01□□□□□ -0.17
TCF4-222ENST00000564228 ZNF521Q96K83 1311 aa14□□□□□ -0.17
TCF4-222ENST00000564228 NUTM2GQ5VZR2 741 aa14□□□□□ -0.17
TCF4-222ENST00000564228 MARF1Q9Y4F3 1742 aaKnown RBP14□□□□□ -0.17
TCF4-222ENST00000564228 OVOS2A0A0J9YW53 1432 aa14□□□□□ -0.17
TCF4-222ENST00000564228 OVOS2Q6IE36 1432 aa14□□□□□ -0.17
TCF4-222ENST00000564228 ABTB2Q8N961 1025 aa14□□□□□ -0.17
TCF4-222ENST00000564228 DDX17Q92841 729 aaKnown RBP14□□□□□ -0.17
TCF4-222ENST00000564228 TRPM3Q9HCF6 1732 aaPredicted RBP13.99□□□□□ -0.17
TCF4-222ENST00000564228 SOX12O15370 315 aa13.99□□□□□ -0.17
TCF4-222ENST00000564228 NLRP6P59044 892 aa13.99□□□□□ -0.17
TCF4-222ENST00000564228 PDCL3Q9H2J4 239 aa13.99□□□□□ -0.17
TCF4-222ENST00000564228 SLAIN2Q9P270 581 aa13.99□□□□□ -0.17
TCF4-222ENST00000564228 SHPRHQ149N8 1683 aa13.98□□□□□ -0.17
TCF4-222ENST00000564228 MCM4P33991 863 aa13.98□□□□□ -0.17
TCF4-222ENST00000564228 WDR43Q15061 677 aaKnown RBP eCLIP13.98□□□□□ -0.17
TCF4-222ENST00000564228 KRT28Q7Z3Y7 464 aa13.98□□□□□ -0.17
TCF4-222ENST00000564228 CFAP53Q96M91 514 aa13.98□□□□□ -0.17
TCF4-222ENST00000564228 USP54Q70EL1 1684 aa13.97□□□□□ -0.17
TCF4-222ENST00000564228 ESPNB1AK53 854 aa13.97□□□□□ -0.17
TCF4-222ENST00000564228 LMOD2Q6P5Q4 547 aa13.97□□□□□ -0.17
TCF4-222ENST00000564228 BRINP3Q76B58 766 aa13.97□□□□□ -0.17
TCF4-222ENST00000564228 SLKQ9H2G2 1235 aaPredicted RBP13.97□□□□□ -0.17
TCF4-222ENST00000564228 CALD1Q05682 793 aaKnown RBP13.96□□□□□ -0.17
TCF4-222ENST00000564228 RRS1Q15050 365 aaKnown RBP13.96□□□□□ -0.17
TCF4-222ENST00000564228 USP31Q70CQ4 1352 aa13.96□□□□□ -0.17
TCF4-222ENST00000564228 PLEKHG5O94827 1062 aa13.96□□□□□ -0.18
TCF4-222ENST00000564228 GOLGA2Q08379 1002 aa13.96□□□□□ -0.18
TCF4-222ENST00000564228 UPF2Q9HAU5 1272 aaKnown RBP13.96□□□□□ -0.18
TCF4-222ENST00000564228 POLKQ9UBT6 870 aa13.96□□□□□ -0.18
TCF4-222ENST00000564228 EMILIN1Q9Y6C2 1016 aa13.96□□□□□ -0.18
TCF4-222ENST00000564228 NPHP3Q7Z494 1330 aa13.95□□□□□ -0.18
TCF4-222ENST00000564228 TRMT2AQ8IZ69 625 aaKnown RBP13.95□□□□□ -0.18
TCF4-222ENST00000564228 TBC1D32Q96NH3 1257 aa13.95□□□□□ -0.18
TCF4-222ENST00000564228 PANK2Q9BZ23 570 aa13.95□□□□□ -0.18
TCF4-222ENST00000564228 AATKQ6ZMQ8 1374 aa13.95□□□□□ -0.18
TCF4-222ENST00000564228 ALS2Q96Q42 1657 aa13.95□□□□□ -0.18
TCF4-222ENST00000564228 MYH16Q9H6N6 1097 aa13.94□□□□□ -0.18
TCF4-222ENST00000564228 ADAMTS8Q9UP79 889 aa13.94□□□□□ -0.18
TCF4-222ENST00000564228 LTN1O94822 1766 aa13.94□□□□□ -0.18
TCF4-222ENST00000564228 PODXL2Q9NZ53 605 aa13.94□□□□□ -0.18
TCF4-222ENST00000564228 SLFN5Q08AF3 891 aa13.93□□□□□ -0.18
TCF4-222ENST00000564228 AAMPQ13685 434 aa13.93□□□□□ -0.18
TCF4-222ENST00000564228 COL3A1P02461 1466 aaPredicted RBP13.92□□□□□ -0.18
TCF4-222ENST00000564228 PXDNQ92626 1479 aa13.92□□□□□ -0.18
TCF4-222ENST00000564228 DDX11L8A8MPP1 907 aa13.92□□□□□ -0.18
TCF4-222ENST00000564228 TBC1D2Q9BYX2 928 aa13.92□□□□□ -0.18
TCF4-222ENST00000564228 GRPEL1Q9HAV7 217 aa13.92□□□□□ -0.18
TCF4-222ENST00000564228 PEAK1Q9H792 1746 aa13.92□□□□□ -0.18
TCF4-222ENST00000564228 TRAK2O60296 914 aa13.92□□□□□ -0.18
TCF4-222ENST00000564228 SEC24BO95487 1268 aa13.92□□□□□ -0.18
TCF4-222ENST00000564228 PDE3AQ14432 1141 aa13.92□□□□□ -0.18
TCF4-222ENST00000564228 CHMP5Q9NZZ3 219 aa13.92□□□□□ -0.18
TCF4-222ENST00000564228 TAOK2Q9UL54 1235 aa13.92□□□□□ -0.18
TCF4-222ENST00000564228 ROBO1Q9Y6N7 1651 aa13.92□□□□□ -0.18
TCF4-222ENST00000564228 CDK12Q9NYV4 1490 aaPredicted RBP13.91□□□□□ -0.18
TCF4-222ENST00000564228 HAP1P54257 671 aaPredicted RBP13.91□□□□□ -0.18
TCF4-222ENST00000564228 TERF1P54274 439 aa13.91□□□□□ -0.18
TCF4-222ENST00000564228 NHSL1Q5SYE7 1610 aa13.91□□□□□ -0.18
TCF4-222ENST00000564228 U2SURPO15042 1029 aaKnown RBP13.9□□□□□ -0.18
TCF4-222ENST00000564228 DIAPH1O60610 1272 aaKnown RBP13.9□□□□□ -0.18
TCF4-222ENST00000564228 MAP3K19Q56UN5 1328 aa13.89□□□□□ -0.19
TCF4-222ENST00000564228 SBNO1A3KN83 1393 aa13.89□□□□□ -0.19
TCF4-222ENST00000564228 PNPLA6Q8IY17 1366 aa13.89□□□□□ -0.19
TCF4-222ENST00000564228 TNS3Q68CZ2 1445 aa13.89□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms