RNA–Protein interactions for RNA: ENST00000563854.1

NME3-205, Transcript of NME/NM23 nucleoside diphosphate kinase 3, humanhuman

TSL 5

Gene NME3, Length 583 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NME3-205ENST00000563854 TERF2IPQ9NYB0 399 aa24.89■■□□□ 1.58
NME3-205ENST00000563854 AXIN2Q9Y2T1 843 aa24.89■■□□□ 1.58
NME3-205ENST00000563854 A0A1W2PP64 1363 aa24.89■■□□□ 1.57
NME3-205ENST00000563854 CSB-PGBD3P0DP91 1061 aa24.88■■□□□ 1.57
NME3-205ENST00000563854 EN1Q05925 392 aaPredicted RBP24.88■■□□□ 1.57
NME3-205ENST00000563854 RGPD5Q99666 1765 aa24.88■■□□□ 1.57
NME3-205ENST00000563854 EDC4Q6P2E9 1401 aaKnown RBP24.87■■□□□ 1.57
NME3-205ENST00000563854 USP47Q96K76 1375 aa24.87■■□□□ 1.57
NME3-205ENST00000563854 WDR17Q8IZU2 1322 aa24.86■■□□□ 1.57
NME3-205ENST00000563854 PARP4Q9UKK3 1724 aaKnown RBP24.86■■□□□ 1.57
NME3-205ENST00000563854 USP31Q70CQ4 1352 aa24.84■■□□□ 1.57
NME3-205ENST00000563854 PUS7Q96PZ0 661 aaKnown RBP24.84■■□□□ 1.57
NME3-205ENST00000563854 USP54Q70EL1 1684 aa24.84■■□□□ 1.57
NME3-205ENST00000563854 LRRC37A3O60309 1634 aa24.83■■□□□ 1.57
NME3-205ENST00000563854 WNK3Q9BYP7 1800 aa24.82■■□□□ 1.56
NME3-205ENST00000563854 NINLQ9Y2I6 1382 aa24.81■■□□□ 1.56
NME3-205ENST00000563854 APBA3O96018 575 aa24.81■■□□□ 1.56
NME3-205ENST00000563854 PSDA5PKW4 1024 aaPredicted RBP24.8■■□□□ 1.56
NME3-205ENST00000563854 SLC24A1O60721 1099 aa24.8■■□□□ 1.56
NME3-205ENST00000563854 EZH2Q15910 746 aaKnown RBP24.8■■□□□ 1.56
NME3-205ENST00000563854 DDB1Q16531 1140 aa24.8■■□□□ 1.56
NME3-205ENST00000563854 LTN1O94822 1766 aa24.8■■□□□ 1.56
NME3-205ENST00000563854 DISP2A7MBM2 1401 aa24.79■■□□□ 1.56
NME3-205ENST00000563854 TMF1P82094 1093 aa24.79■■□□□ 1.56
NME3-205ENST00000563854 ABCC6O95255 1503 aa24.79■■□□□ 1.56
NME3-205ENST00000563854 OVOS2A0A0G2JMS6 1433 aa24.78■■□□□ 1.56
NME3-205ENST00000563854 OVOS2A0A0J9YW53 1432 aa24.78■■□□□ 1.56
NME3-205ENST00000563854 OVOS2Q6IE36 1432 aa24.78■■□□□ 1.56
NME3-205ENST00000563854 CARD10Q9BWT7 1032 aa24.77■■□□□ 1.56
NME3-205ENST00000563854 CLSPNQ9HAW4 1339 aa24.75■■□□□ 1.55
NME3-205ENST00000563854 ANKRD36BQ8N2N9 1353 aa24.74■■□□□ 1.55
NME3-205ENST00000563854 CCDC7Q96M83 1385 aa24.73■■□□□ 1.55
NME3-205ENST00000563854 CAMKK2Q96RR4 588 aa24.73■■□□□ 1.55
NME3-205ENST00000563854 CDCA7Q9BWT1 371 aaPredicted RBP24.73■■□□□ 1.55
NME3-205ENST00000563854 NLRP2Q9NX02 1062 aa24.73■■□□□ 1.55
NME3-205ENST00000563854 PEAK1Q9H792 1746 aa24.72■■□□□ 1.55
NME3-205ENST00000563854 ERBB3P21860 1342 aa24.72■■□□□ 1.55
NME3-205ENST00000563854 COG3Q96JB2 828 aa24.72■■□□□ 1.55
NME3-205ENST00000563854 TIMELESSQ9UNS1 1208 aa24.72■■□□□ 1.55
NME3-205ENST00000563854 R3HDM1Q15032 1099 aaKnown RBP24.71■■□□□ 1.55
NME3-205ENST00000563854 ANKRD24Q8TF21 1146 aa24.71■■□□□ 1.55
NME3-205ENST00000563854 C11orf95C9JLR9 678 aaPredicted RBP24.7■■□□□ 1.54
NME3-205ENST00000563854 CCER1Q8TC90 406 aaPredicted RBP24.7■■□□□ 1.54
NME3-205ENST00000563854 PARD3Q8TEW0 1356 aa24.69■■□□□ 1.54
NME3-205ENST00000563854 CDCA8Q53HL2 280 aa24.68■■□□□ 1.54
NME3-205ENST00000563854 MARCH10Q8NA82 808 aaPredicted RBP24.68■■□□□ 1.54
NME3-205ENST00000563854 LTV1Q96GA3 475 aaPredicted RBP24.68■■□□□ 1.54
NME3-205ENST00000563854 RREB1Q92766 1687 aa24.68■■□□□ 1.54
NME3-205ENST00000563854 EXOC5O00471 708 aa24.67■■□□□ 1.54
NME3-205ENST00000563854 TNS2Q63HR2 1409 aa24.66■■□□□ 1.54
NME3-205ENST00000563854 NUP188Q5SRE5 1749 aa24.66■■□□□ 1.54
NME3-205ENST00000563854 SBF2Q86WG5 1849 aa24.65■■□□□ 1.54
NME3-205ENST00000563854 FBLN1P23142 703 aa24.65■■□□□ 1.54
NME3-205ENST00000563854 GGNBP2Q9H3C7 697 aa24.65■■□□□ 1.54
NME3-205ENST00000563854 MAP3K19Q56UN5 1328 aa24.63■■□□□ 1.53
NME3-205ENST00000563854 AMPHP49418 695 aa24.63■■□□□ 1.53
NME3-205ENST00000563854 PTF1AQ7RTS3 328 aa24.63■■□□□ 1.53
NME3-205ENST00000563854 IP6K1Q92551 441 aa24.63■■□□□ 1.53
NME3-205ENST00000563854 LRP5O75197 1615 aa24.63■■□□□ 1.53
NME3-205ENST00000563854 MYOM1P52179 1685 aa24.62■■□□□ 1.53
NME3-205ENST00000563854 IL2RBP14784 551 aa24.62■■□□□ 1.53
NME3-205ENST00000563854 POLR3GLQ9BT43 218 aa24.62■■□□□ 1.53
NME3-205ENST00000563854 KIF20BQ96Q89 1820 aa24.61■■□□□ 1.53
NME3-205ENST00000563854 BCL11BQ9C0K0 894 aaPredicted RBP24.61■■□□□ 1.53
NME3-205ENST00000563854 FYB1O15117 783 aa24.6■■□□□ 1.53
NME3-205ENST00000563854 NBPF14Q5TI25 921 aa24.6■■□□□ 1.53
NME3-205ENST00000563854 FAM208AQ9UK61 1670 aaKnown RBP24.59■■□□□ 1.53
NME3-205ENST00000563854 HOXC9P31274 260 aa24.59■■□□□ 1.53
NME3-205ENST00000563854 RRS1Q15050 365 aaKnown RBP24.59■■□□□ 1.53
NME3-205ENST00000563854 BCL9O00512 1426 aa24.57■■□□□ 1.52
NME3-205ENST00000563854 NSD3Q9BZ95 1437 aa24.57■■□□□ 1.52
NME3-205ENST00000563854 ACSBG1Q96GR2 724 aa24.56■■□□□ 1.52
NME3-205ENST00000563854 RGPD3A6NKT7 1758 aaPredicted RBP24.56■■□□□ 1.52
NME3-205ENST00000563854 RGPD4Q7Z3J3 1758 aa24.56■■□□□ 1.52
NME3-205ENST00000563854 RTL1A6NKG5 1358 aa24.54■■□□□ 1.52
NME3-205ENST00000563854 PLSCR1O15162 318 aa24.54■■□□□ 1.52
NME3-205ENST00000563854 KCNQ2O43526 872 aa24.53■■□□□ 1.52
NME3-205ENST00000563854 CARD14Q9BXL6 1004 aa24.53■■□□□ 1.52
NME3-205ENST00000563854 NHSQ6T4R5 1651 aa24.53■■□□□ 1.52
NME3-205ENST00000563854 RGPD2P0DJD1 1756 aa24.52■■□□□ 1.52
NME3-205ENST00000563854 EIF4G2P78344 907 aaKnown RBP eCLIP24.51■■□□□ 1.51
NME3-205ENST00000563854 DDX54Q8TDD1 881 aaKnown RBP24.51■■□□□ 1.51
NME3-205ENST00000563854 SMG6Q86US8 1419 aaKnown RBP24.51■■□□□ 1.51
NME3-205ENST00000563854 HSPA5P11021 654 aaKnown RBP24.5■■□□□ 1.51
NME3-205ENST00000563854 USHBP1Q8N6Y0 703 aa24.48■■□□□ 1.51
NME3-205ENST00000563854 ANO8Q9HCE9 1232 aaPredicted RBP24.48■■□□□ 1.51
NME3-205ENST00000563854 TXNRD1Q16881 649 aa24.46■■□□□ 1.51
NME3-205ENST00000563854 MEGF6O75095 1541 aa24.45■■□□□ 1.51
NME3-205ENST00000563854 FLT4P35916 1363 aa24.45■■□□□ 1.5
NME3-205ENST00000563854 PPM1GO15355 546 aaPredicted RBP24.45■■□□□ 1.5
NME3-205ENST00000563854 HSP90AB2PQ58FF8 381 aa24.45■■□□□ 1.5
NME3-205ENST00000563854 NBPF6Q5VWK0 638 aa24.45■■□□□ 1.5
NME3-205ENST00000563854 PROM2Q8N271 834 aa24.45■■□□□ 1.5
NME3-205ENST00000563854 NBPF4Q96M43 638 aa24.45■■□□□ 1.5
NME3-205ENST00000563854 CGNL1Q0VF96 1302 aa24.44■■□□□ 1.5
NME3-205ENST00000563854 EMILIN1Q9Y6C2 1016 aa24.44■■□□□ 1.5
NME3-205ENST00000563854 BTAF1O14981 1849 aa24.44■■□□□ 1.5
NME3-205ENST00000563854 INSRP06213 1382 aa24.42■■□□□ 1.5
NME3-205ENST00000563854 KAT6BQ8WYB5 2073 aa24.41■■□□□ 1.5
NME3-205ENST00000563854 ZCRB1Q8TBF4 217 aaKnown RBP24.41■■□□□ 1.5
Retrieved 100 of 20,778 RNA–protein pairs in 6.9 ms