RNA–Protein interactions for RNA: ENST00000563842.5

CLK3-213, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 860 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-213ENST00000563842 COG3Q96JB2 828 aa18.57■□□□□ 0.56
CLK3-213ENST00000563842 OVOS2A0A0J9YW53 1432 aa18.57■□□□□ 0.56
CLK3-213ENST00000563842 OVOS2Q6IE36 1432 aa18.57■□□□□ 0.56
CLK3-213ENST00000563842 KIF20BQ96Q89 1820 aa18.56■□□□□ 0.56
CLK3-213ENST00000563842 THRAP3Q9Y2W1 955 aaKnown RBP18.56■□□□□ 0.56
CLK3-213ENST00000563842 LARP1Q6PKG0 1096 aaKnown RBP18.55■□□□□ 0.56
CLK3-213ENST00000563842 BARGINQ6ZT62 677 aa18.55■□□□□ 0.56
CLK3-213ENST00000563842 KRT27Q7Z3Y8 459 aa18.55■□□□□ 0.56
CLK3-213ENST00000563842 POLR3GLQ9BT43 218 aa18.55■□□□□ 0.56
CLK3-213ENST00000563842 CRB1P82279 1406 aa18.55■□□□□ 0.56
CLK3-213ENST00000563842 THSD7AQ9UPZ6 1657 aa18.54■□□□□ 0.56
CLK3-213ENST00000563842 CCDC125Q86Z20 511 aa18.54■□□□□ 0.56
CLK3-213ENST00000563842 TCP11L2Q8N4U5 519 aa18.54■□□□□ 0.56
CLK3-213ENST00000563842 USP35Q9P2H5 1018 aa18.54■□□□□ 0.56
CLK3-213ENST00000563842 WDR17Q8IZU2 1322 aa18.52■□□□□ 0.56
CLK3-213ENST00000563842 TOM1L2Q6ZVM7 507 aa18.52■□□□□ 0.56
CLK3-213ENST00000563842 AXIN2Q9Y2T1 843 aa18.52■□□□□ 0.56
CLK3-213ENST00000563842 FYB1O15117 783 aa18.51■□□□□ 0.55
CLK3-213ENST00000563842 CSB-PGBD3P0DP91 1061 aa18.51■□□□□ 0.55
CLK3-213ENST00000563842 NSD3Q9BZ95 1437 aa18.49■□□□□ 0.55
CLK3-213ENST00000563842 PARP4Q9UKK3 1724 aaKnown RBP18.49■□□□□ 0.55
CLK3-213ENST00000563842 CARD14Q9BXL6 1004 aa18.48■□□□□ 0.55
CLK3-213ENST00000563842 GGNBP2Q9H3C7 697 aa18.48■□□□□ 0.55
CLK3-213ENST00000563842 BLMP54132 1417 aaPredicted RBP18.48■□□□□ 0.55
CLK3-213ENST00000563842 WNK3Q9BYP7 1800 aa18.47■□□□□ 0.55
CLK3-213ENST00000563842 PDE3BQ13370 1112 aa18.47■□□□□ 0.55
CLK3-213ENST00000563842 SF3B2Q13435 895 aaKnown RBP18.47■□□□□ 0.55
CLK3-213ENST00000563842 CDCA7Q9BWT1 371 aaPredicted RBP18.47■□□□□ 0.55
CLK3-213ENST00000563842 CARD10Q9BWT7 1032 aa18.47■□□□□ 0.55
CLK3-213ENST00000563842 CGNL1Q0VF96 1302 aa18.47■□□□□ 0.55
CLK3-213ENST00000563842 IP6K1Q92551 441 aa18.46■□□□□ 0.55
CLK3-213ENST00000563842 FAM208AQ9UK61 1670 aaKnown RBP18.46■□□□□ 0.55
CLK3-213ENST00000563842 EP400Q96L91 3159 aa18.46■□□□□ 0.55
CLK3-213ENST00000563842 ERBB3P21860 1342 aa18.46■□□□□ 0.55
CLK3-213ENST00000563842 CCDC7Q96M83 1385 aa18.45■□□□□ 0.54
CLK3-213ENST00000563842 AMPHP49418 695 aa18.45■□□□□ 0.54
CLK3-213ENST00000563842 C11orf95C9JLR9 678 aaPredicted RBP18.44■□□□□ 0.54
CLK3-213ENST00000563842 MAP3K19Q56UN5 1328 aa18.44■□□□□ 0.54
CLK3-213ENST00000563842 MAP2P11137 1827 aaKnown RBP18.44■□□□□ 0.54
CLK3-213ENST00000563842 ANKRD26Q9UPS8 1709 aa18.43■□□□□ 0.54
CLK3-213ENST00000563842 FAM196AQ6ZSG2 479 aa18.43■□□□□ 0.54
CLK3-213ENST00000563842 ANKRD24Q8TF21 1146 aa18.43■□□□□ 0.54
CLK3-213ENST00000563842 RGPD1P0DJD0 1748 aa18.43■□□□□ 0.54
CLK3-213ENST00000563842 RTL1A6NKG5 1358 aa18.42■□□□□ 0.54
CLK3-213ENST00000563842 PANK3Q9H999 370 aa18.42■□□□□ 0.54
CLK3-213ENST00000563842 NLRP2Q9NX02 1062 aa18.42■□□□□ 0.54
CLK3-213ENST00000563842 HOXC9P31274 260 aa18.41■□□□□ 0.54
CLK3-213ENST00000563842 DDB1Q16531 1140 aa18.41■□□□□ 0.54
CLK3-213ENST00000563842 KIF24Q5T7B8 1368 aa18.41■□□□□ 0.54
CLK3-213ENST00000563842 LRRC37A3O60309 1634 aa18.39■□□□□ 0.53
CLK3-213ENST00000563842 RRS1Q15050 365 aaKnown RBP18.39■□□□□ 0.53
CLK3-213ENST00000563842 KIF7Q2M1P5 1343 aa18.39■□□□□ 0.53
CLK3-213ENST00000563842 FBLN1P23142 703 aa18.38■□□□□ 0.53
CLK3-213ENST00000563842 FAM182BQ5T319 152 aa18.38■□□□□ 0.53
CLK3-213ENST00000563842 NSD2O96028 1365 aa18.38■□□□□ 0.53
CLK3-213ENST00000563842 KAT6BQ8WYB5 2073 aa18.38■□□□□ 0.53
CLK3-213ENST00000563842 EXOC5O00471 708 aa18.37■□□□□ 0.53
CLK3-213ENST00000563842 BAG6P46379 1132 aa18.37■□□□□ 0.53
CLK3-213ENST00000563842 LTV1Q96GA3 475 aaPredicted RBP18.37■□□□□ 0.53
CLK3-213ENST00000563842 KNSTRNQ9Y448 316 aa18.37■□□□□ 0.53
CLK3-213ENST00000563842 SMG6Q86US8 1419 aaKnown RBP18.37■□□□□ 0.53
CLK3-213ENST00000563842 DISP2A7MBM2 1401 aa18.36■□□□□ 0.53
CLK3-213ENST00000563842 RGPD2P0DJD1 1756 aa18.36■□□□□ 0.53
CLK3-213ENST00000563842 IL2RBP14784 551 aa18.36■□□□□ 0.53
CLK3-213ENST00000563842 FLT4P35916 1363 aa18.36■□□□□ 0.53
CLK3-213ENST00000563842 SBF2Q86WG5 1849 aa18.35■□□□□ 0.53
CLK3-213ENST00000563842 OVOS2A0A0G2JMS6 1433 aa18.35■□□□□ 0.53
CLK3-213ENST00000563842 INSRP06213 1382 aa18.34■□□□□ 0.53
CLK3-213ENST00000563842 TNS1Q9HBL0 1735 aaKnown RBP18.34■□□□□ 0.53
CLK3-213ENST00000563842 PEAK1Q9H792 1746 aa18.32■□□□□ 0.52
CLK3-213ENST00000563842 TRIM37O94972 964 aa18.32■□□□□ 0.52
CLK3-213ENST00000563842 TNS2Q63HR2 1409 aa18.32■□□□□ 0.52
CLK3-213ENST00000563842 PPM1GO15355 546 aaPredicted RBP18.31■□□□□ 0.52
CLK3-213ENST00000563842 DEFB132Q7Z7B7 95 aa18.31■□□□□ 0.52
CLK3-213ENST00000563842 EMILIN1Q9Y6C2 1016 aa18.31■□□□□ 0.52
CLK3-213ENST00000563842 HSP90AB2PQ58FF8 381 aa18.3■□□□□ 0.52
CLK3-213ENST00000563842 MORC1Q86VD1 984 aa18.3■□□□□ 0.52
CLK3-213ENST00000563842 BCL9O00512 1426 aa18.3■□□□□ 0.52
CLK3-213ENST00000563842 WASHC2AQ641Q2 1341 aa18.29■□□□□ 0.52
CLK3-213ENST00000563842 MARCH10Q8NA82 808 aaPredicted RBP18.29■□□□□ 0.52
CLK3-213ENST00000563842 POLKQ9UBT6 870 aa18.29■□□□□ 0.52
CLK3-213ENST00000563842 APBA3O96018 575 aa18.28■□□□□ 0.52
CLK3-213ENST00000563842 TNNT2P45379 298 aaPredicted RBP18.28■□□□□ 0.52
CLK3-213ENST00000563842 NBPF6Q5VWK0 638 aa18.27■□□□□ 0.52
CLK3-213ENST00000563842 NBPF4Q96M43 638 aa18.27■□□□□ 0.52
CLK3-213ENST00000563842 EN1Q05925 392 aaPredicted RBP18.26■□□□□ 0.51
CLK3-213ENST00000563842 RAPGEF4Q8WZA2 1011 aa18.26■□□□□ 0.51
CLK3-213ENST00000563842 PARD3Q8TEW0 1356 aa18.26■□□□□ 0.51
CLK3-213ENST00000563842 AMER1Q5JTC6 1135 aaPredicted RBP18.25■□□□□ 0.51
CLK3-213ENST00000563842 PER1O15534 1290 aaPredicted RBP18.24■□□□□ 0.51
CLK3-213ENST00000563842 TATP17735 454 aaPredicted RBP18.24■□□□□ 0.51
CLK3-213ENST00000563842 BCL11BQ9C0K0 894 aaPredicted RBP18.24■□□□□ 0.51
CLK3-213ENST00000563842 RGPD3A6NKT7 1758 aaPredicted RBP18.23■□□□□ 0.51
CLK3-213ENST00000563842 RGPD4Q7Z3J3 1758 aa18.23■□□□□ 0.51
CLK3-213ENST00000563842 ZCRB1Q8TBF4 217 aaKnown RBP18.23■□□□□ 0.51
CLK3-213ENST00000563842 NPC1L1Q9UHC9 1359 aa18.22■□□□□ 0.51
CLK3-213ENST00000563842 CAMKK2Q96RR4 588 aa18.22■□□□□ 0.51
CLK3-213ENST00000563842 EZH2Q15910 746 aaKnown RBP18.21■□□□□ 0.51
CLK3-213ENST00000563842 USHBP1Q8N6Y0 703 aa18.21■□□□□ 0.51
CLK3-213ENST00000563842 DDX54Q8TDD1 881 aaKnown RBP18.21■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 90.1 ms