RNA–Protein interactions for RNA: ENST00000563835.1

PTPN9-203, Transcript of protein tyrosine phosphatase, non-receptor type 9, humanhuman

TSL 5

Gene PTPN9, Length 338 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9-203ENST00000563835 USP31Q70CQ4 1352 aa13□□□□□ -0.33
PTPN9-203ENST00000563835 DEFB132Q7Z7B7 95 aa13□□□□□ -0.33
PTPN9-203ENST00000563835 AXIN2Q9Y2T1 843 aa13□□□□□ -0.33
PTPN9-203ENST00000563835 PEAK1Q9H792 1746 aa12.99□□□□□ -0.33
PTPN9-203ENST00000563835 HDGFL2Q7Z4V5 671 aaPredicted RBP12.99□□□□□ -0.33
PTPN9-203ENST00000563835 ARHGEF25Q86VW2 580 aa12.99□□□□□ -0.33
PTPN9-203ENST00000563835 NINLQ9Y2I6 1382 aa12.98□□□□□ -0.33
PTPN9-203ENST00000563835 SBF2Q86WG5 1849 aa12.97□□□□□ -0.33
PTPN9-203ENST00000563835 ANKRD36BQ8N2N9 1353 aa12.97□□□□□ -0.33
PTPN9-203ENST00000563835 BARGINQ6ZT62 677 aa12.97□□□□□ -0.33
PTPN9-203ENST00000563835 CCDC125Q86Z20 511 aa12.97□□□□□ -0.33
PTPN9-203ENST00000563835 TCP11L2Q8N4U5 519 aa12.97□□□□□ -0.33
PTPN9-203ENST00000563835 KCNH5Q8NCM2 988 aa12.97□□□□□ -0.33
PTPN9-203ENST00000563835 CCER1Q8TC90 406 aaPredicted RBP12.97□□□□□ -0.33
PTPN9-203ENST00000563835 PUS7Q96PZ0 661 aaKnown RBP12.97□□□□□ -0.33
PTPN9-203ENST00000563835 TERF2IPQ9NYB0 399 aa12.97□□□□□ -0.33
PTPN9-203ENST00000563835 WDR17Q8IZU2 1322 aa12.96□□□□□ -0.33
PTPN9-203ENST00000563835 RGPD2P0DJD1 1756 aa12.96□□□□□ -0.34
PTPN9-203ENST00000563835 RREB1Q92766 1687 aa12.96□□□□□ -0.34
PTPN9-203ENST00000563835 TMF1P82094 1093 aa12.95□□□□□ -0.34
PTPN9-203ENST00000563835 TOM1L2Q6ZVM7 507 aa12.95□□□□□ -0.34
PTPN9-203ENST00000563835 TIMELESSQ9UNS1 1208 aa12.95□□□□□ -0.34
PTPN9-203ENST00000563835 FAM208AQ9UK61 1670 aaKnown RBP12.95□□□□□ -0.34
PTPN9-203ENST00000563835 NUP188Q5SRE5 1749 aa12.94□□□□□ -0.34
PTPN9-203ENST00000563835 SF3B2Q13435 895 aaKnown RBP12.94□□□□□ -0.34
PTPN9-203ENST00000563835 DISP2A7MBM2 1401 aa12.94□□□□□ -0.34
PTPN9-203ENST00000563835 THRAP3Q9Y2W1 955 aaKnown RBP12.93□□□□□ -0.34
PTPN9-203ENST00000563835 TRIM37O94972 964 aa12.92□□□□□ -0.34
PTPN9-203ENST00000563835 ERBB3P21860 1342 aa12.91□□□□□ -0.34
PTPN9-203ENST00000563835 OVOS2A0A0G2JMS6 1433 aa12.91□□□□□ -0.34
PTPN9-203ENST00000563835 CSB-PGBD3P0DP91 1061 aa12.91□□□□□ -0.34
PTPN9-203ENST00000563835 FBLN1P23142 703 aa12.91□□□□□ -0.34
PTPN9-203ENST00000563835 BAG6P46379 1132 aa12.91□□□□□ -0.34
PTPN9-203ENST00000563835 SRCAPQ6ZRS2 3230 aa12.91□□□□□ -0.34
PTPN9-203ENST00000563835 NSD3Q9BZ95 1437 aa12.9□□□□□ -0.34
PTPN9-203ENST00000563835 EN1Q05925 392 aaPredicted RBP12.9□□□□□ -0.34
PTPN9-203ENST00000563835 PDE3BQ13370 1112 aa12.9□□□□□ -0.34
PTPN9-203ENST00000563835 SHANK3Q9BYB0 1731 aa12.9□□□□□ -0.34
PTPN9-203ENST00000563835 ANKRD26Q9UPS8 1709 aa12.9□□□□□ -0.34
PTPN9-203ENST00000563835 RGPD3A6NKT7 1758 aaPredicted RBP12.89□□□□□ -0.35
PTPN9-203ENST00000563835 RGPD4Q7Z3J3 1758 aa12.89□□□□□ -0.35
PTPN9-203ENST00000563835 TNS2Q63HR2 1409 aa12.89□□□□□ -0.35
PTPN9-203ENST00000563835 SLC24A1O60721 1099 aa12.89□□□□□ -0.35
PTPN9-203ENST00000563835 FAM196AQ6ZSG2 479 aa12.89□□□□□ -0.35
PTPN9-203ENST00000563835 GGNBP2Q9H3C7 697 aa12.89□□□□□ -0.35
PTPN9-203ENST00000563835 DDB1Q16531 1140 aa12.88□□□□□ -0.35
PTPN9-203ENST00000563835 ANKRD24Q8TF21 1146 aa12.88□□□□□ -0.35
PTPN9-203ENST00000563835 COG3Q96JB2 828 aa12.88□□□□□ -0.35
PTPN9-203ENST00000563835 CARD10Q9BWT7 1032 aa12.88□□□□□ -0.35
PTPN9-203ENST00000563835 CCDC7Q96M83 1385 aa12.88□□□□□ -0.35
PTPN9-203ENST00000563835 NHSQ6T4R5 1651 aa12.88□□□□□ -0.35
PTPN9-203ENST00000563835 MAP3K19Q56UN5 1328 aa12.88□□□□□ -0.35
PTPN9-203ENST00000563835 FYB1O15117 783 aa12.87□□□□□ -0.35
PTPN9-203ENST00000563835 HSPA5P11021 654 aaKnown RBP12.87□□□□□ -0.35
PTPN9-203ENST00000563835 EZH2Q15910 746 aaKnown RBP12.87□□□□□ -0.35
PTPN9-203ENST00000563835 CARD14Q9BXL6 1004 aa12.87□□□□□ -0.35
PTPN9-203ENST00000563835 PSDA5PKW4 1024 aaPredicted RBP12.86□□□□□ -0.35
PTPN9-203ENST00000563835 CDCA8Q53HL2 280 aa12.86□□□□□ -0.35
PTPN9-203ENST00000563835 MARCH10Q8NA82 808 aaPredicted RBP12.86□□□□□ -0.35
PTPN9-203ENST00000563835 LTV1Q96GA3 475 aaPredicted RBP12.86□□□□□ -0.35
PTPN9-203ENST00000563835 POLR3GLQ9BT43 218 aa12.86□□□□□ -0.35
PTPN9-203ENST00000563835 NLRP2Q9NX02 1062 aa12.86□□□□□ -0.35
PTPN9-203ENST00000563835 LRP5O75197 1615 aa12.86□□□□□ -0.35
PTPN9-203ENST00000563835 APBA3O96018 575 aa12.85□□□□□ -0.35
PTPN9-203ENST00000563835 HOXC9P31274 260 aa12.85□□□□□ -0.35
PTPN9-203ENST00000563835 RRS1Q15050 365 aaKnown RBP12.85□□□□□ -0.35
PTPN9-203ENST00000563835 PTF1AQ7RTS3 328 aa12.85□□□□□ -0.35
PTPN9-203ENST00000563835 RTL1A6NKG5 1358 aa12.84□□□□□ -0.35
PTPN9-203ENST00000563835 IP6K1Q92551 441 aa12.84□□□□□ -0.35
PTPN9-203ENST00000563835 CAMKK2Q96RR4 588 aa12.84□□□□□ -0.35
PTPN9-203ENST00000563835 DOT1LQ8TEK3 1739 aa12.84□□□□□ -0.35
PTPN9-203ENST00000563835 BTAF1O14981 1849 aa12.83□□□□□ -0.35
PTPN9-203ENST00000563835 MAP2P11137 1827 aaKnown RBP12.83□□□□□ -0.35
PTPN9-203ENST00000563835 MEGF6O75095 1541 aa12.83□□□□□ -0.35
PTPN9-203ENST00000563835 EIF4G2P78344 907 aaKnown RBP eCLIP12.83□□□□□ -0.36
PTPN9-203ENST00000563835 CDCA7Q9BWT1 371 aaPredicted RBP12.83□□□□□ -0.36
PTPN9-203ENST00000563835 BCL9O00512 1426 aa12.82□□□□□ -0.36
PTPN9-203ENST00000563835 AMPHP49418 695 aa12.82□□□□□ -0.36
PTPN9-203ENST00000563835 PARD3Q8TEW0 1356 aa12.81□□□□□ -0.36
PTPN9-203ENST00000563835 IL2RBP14784 551 aa12.81□□□□□ -0.36
PTPN9-203ENST00000563835 C11orf95C9JLR9 678 aaPredicted RBP12.8□□□□□ -0.36
PTPN9-203ENST00000563835 R3HDM1Q15032 1099 aaKnown RBP12.8□□□□□ -0.36
PTPN9-203ENST00000563835 EXOC5O00471 708 aa12.79□□□□□ -0.36
PTPN9-203ENST00000563835 USHBP1Q8N6Y0 703 aa12.79□□□□□ -0.36
PTPN9-203ENST00000563835 EMILIN1Q9Y6C2 1016 aa12.79□□□□□ -0.36
PTPN9-203ENST00000563835 FLT4P35916 1363 aa12.79□□□□□ -0.36
PTPN9-203ENST00000563835 SMG6Q86US8 1419 aaKnown RBP12.79□□□□□ -0.36
PTPN9-203ENST00000563835 HSP90AB2PQ58FF8 381 aa12.78□□□□□ -0.36
PTPN9-203ENST00000563835 ACSBG1Q96GR2 724 aa12.78□□□□□ -0.36
PTPN9-203ENST00000563835 PKD1L3Q7Z443 1732 aa12.78□□□□□ -0.36
PTPN9-203ENST00000563835 CASZ1Q86V15 1759 aa12.78□□□□□ -0.36
PTPN9-203ENST00000563835 PAPPAQ13219 1627 aa12.77□□□□□ -0.36
PTPN9-203ENST00000563835 TOGARAM1Q9Y4F4 1720 aa12.77□□□□□ -0.36
PTPN9-203ENST00000563835 KCNQ2O43526 872 aa12.77□□□□□ -0.37
PTPN9-203ENST00000563835 NBPF6Q5VWK0 638 aa12.77□□□□□ -0.37
PTPN9-203ENST00000563835 NBPF4Q96M43 638 aa12.77□□□□□ -0.37
PTPN9-203ENST00000563835 BCL11BQ9C0K0 894 aaPredicted RBP12.77□□□□□ -0.37
PTPN9-203ENST00000563835 CGNL1Q0VF96 1302 aa12.77□□□□□ -0.37
PTPN9-203ENST00000563835 INSRP06213 1382 aa12.77□□□□□ -0.37
PTPN9-203ENST00000563835 KAT6BQ8WYB5 2073 aa12.76□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms