RNA–Protein interactions for RNA: ENST00000561976.5

VPS9D1-202, Transcript of VPS9 domain containing 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS9D1, Length 2,791 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-202ENST00000561976 GAS2L2Q8NHY3 880 aa17.35■□□□□ 0.37
VPS9D1-202ENST00000561976 PHACTR3Q96KR7 559 aa17.35■□□□□ 0.37
VPS9D1-202ENST00000561976 ERBB4Q15303 1308 aa17.35■□□□□ 0.37
VPS9D1-202ENST00000561976 CDC45O75419 566 aa17.34■□□□□ 0.37
VPS9D1-202ENST00000561976 CD163L1Q9NR16 1453 aa17.34■□□□□ 0.37
VPS9D1-202ENST00000561976 LRRC7Q96NW7 1537 aa17.34■□□□□ 0.37
VPS9D1-202ENST00000561976 SIGLEC1Q9BZZ2 1709 aa17.34■□□□□ 0.37
VPS9D1-202ENST00000561976 GNAI1P63096 354 aa17.34■□□□□ 0.37
VPS9D1-202ENST00000561976 SIRT2Q8IXJ6 389 aa17.34■□□□□ 0.37
VPS9D1-202ENST00000561976 ZFYVE9O95405 1425 aa17.34■□□□□ 0.37
VPS9D1-202ENST00000561976 POLKQ9UBT6 870 aa17.33■□□□□ 0.36
VPS9D1-202ENST00000561976 FAM135BQ49AJ0 1406 aa17.33■□□□□ 0.36
VPS9D1-202ENST00000561976 ANKRD26Q9UPS8 1709 aa17.33■□□□□ 0.36
VPS9D1-202ENST00000561976 PIK3C2BO00750 1634 aa17.32■□□□□ 0.36
VPS9D1-202ENST00000561976 RAPGEF3O95398 923 aa17.32■□□□□ 0.36
VPS9D1-202ENST00000561976 OSCARQ8IYS5 282 aa17.32■□□□□ 0.36
VPS9D1-202ENST00000561976 SLC52A1Q9NWF4 448 aa17.32■□□□□ 0.36
VPS9D1-202ENST00000561976 DDX49Q9Y6V7 483 aaKnown RBP17.32■□□□□ 0.36
VPS9D1-202ENST00000561976 PTPRMP28827 1452 aa17.32■□□□□ 0.36
VPS9D1-202ENST00000561976 TWISTNBQ3B726 338 aaPredicted RBP17.32■□□□□ 0.36
VPS9D1-202ENST00000561976 MBIPQ9NS73 344 aa17.31■□□□□ 0.36
VPS9D1-202ENST00000561976 IFT57Q9NWB7 429 aa17.31■□□□□ 0.36
VPS9D1-202ENST00000561976 PTCH1Q13635 1447 aa17.31■□□□□ 0.36
VPS9D1-202ENST00000561976 ANP32BQ92688 251 aaKnown RBP17.31■□□□□ 0.36
VPS9D1-202ENST00000561976 YTHDC2Q9H6S0 1430 aaKnown RBP17.31■□□□□ 0.36
VPS9D1-202ENST00000561976 PIK3R4Q99570 1358 aa17.3■□□□□ 0.36
VPS9D1-202ENST00000561976 ABCC4O15439 1325 aa17.3■□□□□ 0.36
VPS9D1-202ENST00000561976 BAG4O95429 457 aaKnown RBP17.29■□□□□ 0.36
VPS9D1-202ENST00000561976 HSP90AA2PQ14568 343 aaPredicted RBP17.29■□□□□ 0.36
VPS9D1-202ENST00000561976 API5Q9BZZ5 524 aaKnown RBP17.29■□□□□ 0.36
VPS9D1-202ENST00000561976 GSPT1P15170 499 aaKnown RBP17.29■□□□□ 0.36
VPS9D1-202ENST00000561976 NASPP49321 788 aaPredicted RBP17.29■□□□□ 0.36
VPS9D1-202ENST00000561976 GLIPR1L2Q4G1C9 344 aa17.28■□□□□ 0.36
VPS9D1-202ENST00000561976 NCLP19338 710 aaKnown RBP17.28■□□□□ 0.36
VPS9D1-202ENST00000561976 CCDC173Q0VFZ6 552 aa17.28■□□□□ 0.36
VPS9D1-202ENST00000561976 RABEP1Q15276 862 aa17.28■□□□□ 0.36
VPS9D1-202ENST00000561976 PLEKHM2Q8IWE5 1019 aa17.28■□□□□ 0.36
VPS9D1-202ENST00000561976 C8orf58Q8NAV2 365 aa17.28■□□□□ 0.36
VPS9D1-202ENST00000561976 EMILIN1Q9Y6C2 1016 aa17.28■□□□□ 0.36
VPS9D1-202ENST00000561976 KLHL40Q2TBA0 621 aa17.27■□□□□ 0.36
VPS9D1-202ENST00000561976 MCTP1Q6DN14 999 aa17.27■□□□□ 0.35
VPS9D1-202ENST00000561976 PKNOX2Q96KN3 472 aa17.27■□□□□ 0.35
VPS9D1-202ENST00000561976 CFAP44Q96MT7 982 aa17.26■□□□□ 0.35
VPS9D1-202ENST00000561976 CDC42BPGQ6DT37 1551 aa17.26■□□□□ 0.35
VPS9D1-202ENST00000561976 STAG3Q9UJ98 1225 aa17.26■□□□□ 0.35
VPS9D1-202ENST00000561976 ZNF853P0CG23 659 aa17.25■□□□□ 0.35
VPS9D1-202ENST00000561976 KIF20BQ96Q89 1820 aa17.25■□□□□ 0.35
VPS9D1-202ENST00000561976 LMOD3Q0VAK6 560 aa17.25■□□□□ 0.35
VPS9D1-202ENST00000561976 TTC22Q5TAA0 569 aa17.25■□□□□ 0.35
VPS9D1-202ENST00000561976 CLEC17AQ6ZS10 378 aa17.25■□□□□ 0.35
VPS9D1-202ENST00000561976 C16orf71Q8IYS4 520 aaPredicted RBP17.25■□□□□ 0.35
VPS9D1-202ENST00000561976 ARHGAP31Q2M1Z3 1444 aa17.25■□□□□ 0.35
VPS9D1-202ENST00000561976 NUCB2P80303 420 aa17.24■□□□□ 0.35
VPS9D1-202ENST00000561976 FAM83GA6ND36 823 aa17.24■□□□□ 0.35
VPS9D1-202ENST00000561976 RRP9O43818 475 aaKnown RBP17.24■□□□□ 0.35
VPS9D1-202ENST00000561976 DCTPP1Q9H773 170 aa17.24■□□□□ 0.35
VPS9D1-202ENST00000561976 CLTCQ00610 1675 aaKnown RBP17.24■□□□□ 0.35
VPS9D1-202ENST00000561976 APBB1O00213 710 aa17.23■□□□□ 0.35
VPS9D1-202ENST00000561976 IL13P35225 146 aa17.23■□□□□ 0.35
VPS9D1-202ENST00000561976 INTS3Q68E01 1043 aaKnown RBP17.23■□□□□ 0.35
VPS9D1-202ENST00000561976 DCTN1Q14203 1278 aa17.23■□□□□ 0.35
VPS9D1-202ENST00000561976 WAPLQ7Z5K2 1190 aa17.23■□□□□ 0.35
VPS9D1-202ENST00000561976 CAVIN1Q6NZI2 390 aaKnown RBP17.23■□□□□ 0.35
VPS9D1-202ENST00000561976 PPP1R9BQ96SB3 815 aa17.23■□□□□ 0.35
VPS9D1-202ENST00000561976 ARHGEF40Q8TER5 1519 aa17.22■□□□□ 0.35
VPS9D1-202ENST00000561976 MYO5BQ9ULV0 1848 aa17.22■□□□□ 0.35
VPS9D1-202ENST00000561976 CASC1Q6TDU7 716 aa17.22■□□□□ 0.35
VPS9D1-202ENST00000561976 USP26Q9BXU7 913 aa17.22■□□□□ 0.35
VPS9D1-202ENST00000561976 REREQ9P2R6 1566 aa17.21■□□□□ 0.35
VPS9D1-202ENST00000561976 NME9Q86XW9 330 aa17.21■□□□□ 0.35
VPS9D1-202ENST00000561976 MSNP26038 577 aaKnown RBP17.21■□□□□ 0.35
VPS9D1-202ENST00000561976 AK9Q5TCS8 1911 aa17.21■□□□□ 0.34
VPS9D1-202ENST00000561976 IBTKQ9P2D0 1353 aaPredicted RBP17.2■□□□□ 0.34
VPS9D1-202ENST00000561976 ZSCAN30Q86W11 494 aa17.2■□□□□ 0.34
VPS9D1-202ENST00000561976 OTUD7AQ8TE49 926 aaPredicted RBP17.2■□□□□ 0.34
VPS9D1-202ENST00000561976 FBXO31Q5XUX0 539 aaPredicted RBP17.2■□□□□ 0.34
VPS9D1-202ENST00000561976 ZRANB1Q9UGI0 708 aa17.2■□□□□ 0.34
VPS9D1-202ENST00000561976 ST18O60284 1047 aa17.19■□□□□ 0.34
VPS9D1-202ENST00000561976 PKP1Q13835 747 aa17.19■□□□□ 0.34
VPS9D1-202ENST00000561976 MAP2P11137 1827 aaKnown RBP17.19■□□□□ 0.34
VPS9D1-202ENST00000561976 ANKRD44Q8N8A2 993 aa17.19■□□□□ 0.34
VPS9D1-202ENST00000561976 RIMS2Q9UQ26 1411 aa17.19■□□□□ 0.34
VPS9D1-202ENST00000561976 TMEM131LA2VDJ0 1609 aa17.19■□□□□ 0.34
VPS9D1-202ENST00000561976 SMARCA5O60264 1052 aaPredicted RBP17.18■□□□□ 0.34
VPS9D1-202ENST00000561976 TPM2P07951 284 aa17.18■□□□□ 0.34
VPS9D1-202ENST00000561976 SDSP20132 328 aa17.18■□□□□ 0.34
VPS9D1-202ENST00000561976 RRS1Q15050 365 aaKnown RBP17.18■□□□□ 0.34
VPS9D1-202ENST00000561976 ZSCAN23Q3MJ62 389 aa17.18■□□□□ 0.34
VPS9D1-202ENST00000561976 DIP2CQ9Y2E4 1556 aa17.18■□□□□ 0.34
VPS9D1-202ENST00000561976 ZNF445P59923 1031 aa17.18■□□□□ 0.34
VPS9D1-202ENST00000561976 CWC22Q9HCG8 908 aaKnown RBP17.18■□□□□ 0.34
VPS9D1-202ENST00000561976 LMBRD1Q9NUN5 540 aa17.18■□□□□ 0.34
VPS9D1-202ENST00000561976 KIF24Q5T7B8 1368 aa17.18■□□□□ 0.34
VPS9D1-202ENST00000561976 ALKQ9UM73 1620 aa17.18■□□□□ 0.34
VPS9D1-202ENST00000561976 KIAA1211Q6ZU35 1233 aa17.17■□□□□ 0.34
VPS9D1-202ENST00000561976 PRPF40AO75400 957 aaKnown RBP17.17■□□□□ 0.34
VPS9D1-202ENST00000561976 RPAP2Q8IXW5 612 aaPredicted RBP17.17■□□□□ 0.34
VPS9D1-202ENST00000561976 COG3Q96JB2 828 aa17.17■□□□□ 0.34
VPS9D1-202ENST00000561976 ATP7BP35670 1465 aa17.17■□□□□ 0.34
VPS9D1-202ENST00000561976 ZGPATQ8N5A5 531 aaKnown RBP17.17■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms