RNA–Protein interactions for RNA: ENST00000559834.1

HDDC3-204, Transcript of HD domain containing 3, humanhuman

TSL 2

Gene HDDC3, Length 1,076 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-204ENST00000559834 PPP1R1BQ9UD71 204 aaPredicted RBP13.07□□□□□ -0.32
HDDC3-204ENST00000559834 QRICH2Q9H0J4 1663 aa13.06□□□□□ -0.32
HDDC3-204ENST00000559834 DCAF8L1A6NGE4 600 aa13.06□□□□□ -0.32
HDDC3-204ENST00000559834 SOX12O15370 315 aa13.06□□□□□ -0.32
HDDC3-204ENST00000559834 KCNQ2O43526 872 aa13.06□□□□□ -0.32
HDDC3-204ENST00000559834 SLIT3O75094 1523 aa13.06□□□□□ -0.32
HDDC3-204ENST00000559834 KTN1Q86UP2 1357 aaKnown RBP13.05□□□□□ -0.32
HDDC3-204ENST00000559834 MARCH10Q8NA82 808 aaPredicted RBP13.04□□□□□ -0.32
HDDC3-204ENST00000559834 CPSF1Q10570 1443 aaKnown RBP13.04□□□□□ -0.32
HDDC3-204ENST00000559834 PARP4Q9UKK3 1724 aaKnown RBP13.03□□□□□ -0.32
HDDC3-204ENST00000559834 HDGFL2Q7Z4V5 671 aaPredicted RBP13.02□□□□□ -0.33
HDDC3-204ENST00000559834 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.02□□□□□ -0.33
HDDC3-204ENST00000559834 TMC1Q8TDI8 760 aa13.02□□□□□ -0.33
HDDC3-204ENST00000559834 CARD11Q9BXL7 1154 aa13.02□□□□□ -0.33
HDDC3-204ENST00000559834 CCDC7Q96M83 1385 aa13.02□□□□□ -0.33
HDDC3-204ENST00000559834 BCL9O00512 1426 aa13.02□□□□□ -0.33
HDDC3-204ENST00000559834 TRPM1Q7Z4N2 1603 aa13.02□□□□□ -0.33
HDDC3-204ENST00000559834 RREB1Q92766 1687 aa13□□□□□ -0.33
HDDC3-204ENST00000559834 PTF1AQ7RTS3 328 aa13□□□□□ -0.33
HDDC3-204ENST00000559834 PROM2Q8N271 834 aa13□□□□□ -0.33
HDDC3-204ENST00000559834 NLRP2Q9NX02 1062 aa13□□□□□ -0.33
HDDC3-204ENST00000559834 COL18A1P39060 1754 aa12.99□□□□□ -0.33
HDDC3-204ENST00000559834 PIK3C2AO00443 1686 aa12.99□□□□□ -0.33
HDDC3-204ENST00000559834 USP31Q70CQ4 1352 aa12.99□□□□□ -0.33
HDDC3-204ENST00000559834 SBNO2Q9Y2G9 1366 aa12.99□□□□□ -0.33
HDDC3-204ENST00000559834 TXNRD1Q16881 649 aa12.99□□□□□ -0.33
HDDC3-204ENST00000559834 PUS7Q96PZ0 661 aaKnown RBP12.99□□□□□ -0.33
HDDC3-204ENST00000559834 STK32BQ9NY57 414 aa12.99□□□□□ -0.33
HDDC3-204ENST00000559834 TERF2IPQ9NYB0 399 aa12.99□□□□□ -0.33
HDDC3-204ENST00000559834 NUP188Q5SRE5 1749 aa12.99□□□□□ -0.33
HDDC3-204ENST00000559834 SLC24A1O60721 1099 aa12.98□□□□□ -0.33
HDDC3-204ENST00000559834 YY1P25490 414 aa12.98□□□□□ -0.33
HDDC3-204ENST00000559834 SLC12A5Q9H2X9 1139 aa12.98□□□□□ -0.33
HDDC3-204ENST00000559834 NINLQ9Y2I6 1382 aa12.97□□□□□ -0.33
HDDC3-204ENST00000559834 PEAK1Q9H792 1746 aa12.97□□□□□ -0.33
HDDC3-204ENST00000559834 IL2RBP14784 551 aa12.97□□□□□ -0.33
HDDC3-204ENST00000559834 NME9Q86XW9 330 aa12.97□□□□□ -0.33
HDDC3-204ENST00000559834 ANO8Q9HCE9 1232 aaPredicted RBP12.97□□□□□ -0.33
HDDC3-204ENST00000559834 LRRC37A3O60309 1634 aa12.96□□□□□ -0.33
HDDC3-204ENST00000559834 ERBB3P21860 1342 aa12.96□□□□□ -0.33
HDDC3-204ENST00000559834 SLC15A2Q16348 729 aa12.96□□□□□ -0.33
HDDC3-204ENST00000559834 AKAP12Q02952 1782 aa12.95□□□□□ -0.34
HDDC3-204ENST00000559834 ABCC6O95255 1503 aa12.95□□□□□ -0.34
HDDC3-204ENST00000559834 ANKRD24Q8TF21 1146 aa12.95□□□□□ -0.34
HDDC3-204ENST00000559834 SBF2Q86WG5 1849 aa12.95□□□□□ -0.34
HDDC3-204ENST00000559834 TONSLQ96HA7 1378 aa12.94□□□□□ -0.34
HDDC3-204ENST00000559834 NFAT5O94916 1531 aa12.94□□□□□ -0.34
HDDC3-204ENST00000559834 ZBTB7AO95365 584 aa12.94□□□□□ -0.34
HDDC3-204ENST00000559834 ACSBG1Q96GR2 724 aa12.94□□□□□ -0.34
HDDC3-204ENST00000559834 ATF5Q9Y2D1 282 aaPredicted RBP12.94□□□□□ -0.34
HDDC3-204ENST00000559834 RGPD3A6NKT7 1758 aaPredicted RBP12.94□□□□□ -0.34
HDDC3-204ENST00000559834 RGPD4Q7Z3J3 1758 aa12.94□□□□□ -0.34
HDDC3-204ENST00000559834 IP6K1Q92551 441 aa12.93□□□□□ -0.34
HDDC3-204ENST00000559834 PDGFDQ9GZP0 370 aaPredicted RBP12.93□□□□□ -0.34
HDDC3-204ENST00000559834 EDC4Q6P2E9 1401 aaKnown RBP12.93□□□□□ -0.34
HDDC3-204ENST00000559834 RGPD5Q99666 1765 aa12.92□□□□□ -0.34
HDDC3-204ENST00000559834 TNS2Q63HR2 1409 aa12.92□□□□□ -0.34
HDDC3-204ENST00000559834 MTFR1LQ9H019 292 aa12.92□□□□□ -0.34
HDDC3-204ENST00000559834 PTGER2P43116 358 aa12.91□□□□□ -0.34
HDDC3-204ENST00000559834 COG3Q96JB2 828 aa12.91□□□□□ -0.34
HDDC3-204ENST00000559834 CD163L1Q9NR16 1453 aa12.91□□□□□ -0.34
HDDC3-204ENST00000559834 DDX54Q8TDD1 881 aaKnown RBP12.9□□□□□ -0.34
HDDC3-204ENST00000559834 MON2Q7Z3U7 1717 aa12.89□□□□□ -0.35
HDDC3-204ENST00000559834 ST20-MTHFSA0A0A6YYL1 179 aa12.89□□□□□ -0.35
HDDC3-204ENST00000559834 AMPHP49418 695 aa12.89□□□□□ -0.35
HDDC3-204ENST00000559834 LTV1Q96GA3 475 aaPredicted RBP12.89□□□□□ -0.35
HDDC3-204ENST00000559834 SYT17Q9BSW7 474 aa12.89□□□□□ -0.35
HDDC3-204ENST00000559834 WNK3Q9BYP7 1800 aa12.89□□□□□ -0.35
HDDC3-204ENST00000559834 A0A1W2PP64 1363 aa12.89□□□□□ -0.35
HDDC3-204ENST00000559834 SLC27A3Q5K4L6 730 aa12.88□□□□□ -0.35
HDDC3-204ENST00000559834 KAT6BQ8WYB5 2073 aa12.88□□□□□ -0.35
HDDC3-204ENST00000559834 ARXQ96QS3 562 aa12.87□□□□□ -0.35
HDDC3-204ENST00000559834 TESK2Q96S53 571 aa12.87□□□□□ -0.35
HDDC3-204ENST00000559834 FHDC1Q9C0D6 1143 aaPredicted RBP12.87□□□□□ -0.35
HDDC3-204ENST00000559834 SLC16A10Q8TF71 515 aa12.86□□□□□ -0.35
HDDC3-204ENST00000559834 MAP3K19Q56UN5 1328 aa12.86□□□□□ -0.35
HDDC3-204ENST00000559834 CASZ1Q86V15 1759 aa12.85□□□□□ -0.35
HDDC3-204ENST00000559834 HOXC9P31274 260 aa12.85□□□□□ -0.35
HDDC3-204ENST00000559834 TMF1P82094 1093 aa12.85□□□□□ -0.35
HDDC3-204ENST00000559834 ZCRB1Q8TBF4 217 aaKnown RBP12.85□□□□□ -0.35
HDDC3-204ENST00000559834 SYTL4Q96C24 671 aaPredicted RBP12.85□□□□□ -0.35
HDDC3-204ENST00000559834 SGIP1Q9BQI5 828 aa12.85□□□□□ -0.35
HDDC3-204ENST00000559834 USP54Q70EL1 1684 aa12.85□□□□□ -0.35
HDDC3-204ENST00000559834 HMGB2P26583 209 aaKnown RBP12.84□□□□□ -0.35
HDDC3-204ENST00000559834 PRIM1P49642 420 aaKnown RBP12.84□□□□□ -0.35
HDDC3-204ENST00000559834 LRRC4BQ9NT99 713 aa12.84□□□□□ -0.35
HDDC3-204ENST00000559834 LTN1O94822 1766 aa12.84□□□□□ -0.35
HDDC3-204ENST00000559834 NHSQ6T4R5 1651 aa12.83□□□□□ -0.35
HDDC3-204ENST00000559834 POLD1P28340 1107 aa12.83□□□□□ -0.36
HDDC3-204ENST00000559834 CDCA8Q53HL2 280 aa12.83□□□□□ -0.36
HDDC3-204ENST00000559834 AKT1S1Q96B36 256 aa12.83□□□□□ -0.36
HDDC3-204ENST00000559834 TFCP2L1Q9NZI6 479 aa12.83□□□□□ -0.36
HDDC3-204ENST00000559834 FYB1O15117 783 aa12.82□□□□□ -0.36
HDDC3-204ENST00000559834 FBLN1P23142 703 aa12.82□□□□□ -0.36
HDDC3-204ENST00000559834 ZNF827Q17R98 1081 aa12.82□□□□□ -0.36
HDDC3-204ENST00000559834 CGNL1Q0VF96 1302 aa12.82□□□□□ -0.36
HDDC3-204ENST00000559834 ANKRD36BQ8N2N9 1353 aa12.81□□□□□ -0.36
HDDC3-204ENST00000559834 RAPGEF4Q8WZA2 1011 aa12.81□□□□□ -0.36
HDDC3-204ENST00000559834 RRS1Q15050 365 aaKnown RBP12.8□□□□□ -0.36
HDDC3-204ENST00000559834 GPR162Q16538 588 aa12.8□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms