RNA–Protein interactions for RNA: ENST00000558925.1

USP3-209, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 501 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-209ENST00000558925 FURINP09958 794 aa3.61□□□□□ -1.83
USP3-209ENST00000558925 CTHP32929 405 aa3.61□□□□□ -1.83
USP3-209ENST00000558925 CTSOP43234 321 aaPredicted RBP3.61□□□□□ -1.83
USP3-209ENST00000558925 BAG6P46379 1132 aa3.61□□□□□ -1.83
USP3-209ENST00000558925 SRSF11Q05519 484 aaKnown RBP3.61□□□□□ -1.83
USP3-209ENST00000558925 DESI1Q6ICB0 168 aa3.61□□□□□ -1.83
USP3-209ENST00000558925 LYPD8Q6UX82 237 aa3.61□□□□□ -1.83
USP3-209ENST00000558925 NUTM1Q86Y26 1132 aa3.61□□□□□ -1.83
USP3-209ENST00000558925 P3H3Q8IVL6 736 aa3.61□□□□□ -1.83
USP3-209ENST00000558925 C1QTNF2Q9BXJ5 285 aa3.61□□□□□ -1.83
USP3-209ENST00000558925 KRBA1A5PL33 1030 aa3.6□□□□□ -1.83
USP3-209ENST00000558925 Q6ZVU0 165 aa3.6□□□□□ -1.83
USP3-209ENST00000558925 GALNT6Q8NCL4 622 aa3.6□□□□□ -1.83
USP3-209ENST00000558925 CCDC102AQ96A19 550 aa3.6□□□□□ -1.83
USP3-209ENST00000558925 GPCPD1Q9NPB8 672 aa3.6□□□□□ -1.83
USP3-209ENST00000558925 PER1O15534 1290 aaPredicted RBP3.59□□□□□ -1.83
USP3-209ENST00000558925 MAP3K10Q02779 954 aa3.59□□□□□ -1.83
USP3-209ENST00000558925 MTMR2Q13614 643 aa3.59□□□□□ -1.83
USP3-209ENST00000558925 SMYD5Q6GMV2 418 aa3.59□□□□□ -1.83
USP3-209ENST00000558925 AGBL1Q96MI9 1066 aa3.59□□□□□ -1.83
USP3-209ENST00000558925 MAP4K5Q9Y4K4 846 aa3.59□□□□□ -1.83
USP3-209ENST00000558925 SNRPNP63162 240 aaKnown RBP3.58□□□□□ -1.84
USP3-209ENST00000558925 AGERQ15109 404 aa3.58□□□□□ -1.84
USP3-209ENST00000558925 PPP1R26Q5T8A7 1209 aaPredicted RBP3.58□□□□□ -1.84
USP3-209ENST00000558925 BPHLQ86WA6 291 aaPredicted RBP3.58□□□□□ -1.84
USP3-209ENST00000558925 CCDC116Q8IYX3 515 aa3.58□□□□□ -1.84
USP3-209ENST00000558925 RNF217Q8TC41 542 aa3.58□□□□□ -1.84
USP3-209ENST00000558925 INSM2Q96T92 566 aaPredicted RBP3.58□□□□□ -1.84
USP3-209ENST00000558925 PCDHB15Q9Y5E8 787 aa3.58□□□□□ -1.84
USP3-209ENST00000558925 EMILIN1Q9Y6C2 1016 aa3.58□□□□□ -1.84
USP3-209ENST00000558925 KRTAP4-8A0A0G2JLE6 195 aa3.57□□□□□ -1.84
USP3-209ENST00000558925 PHF20L1A8MW92 1017 aa3.57□□□□□ -1.84
USP3-209ENST00000558925 GPR25O00155 361 aa3.57□□□□□ -1.84
USP3-209ENST00000558925 COL8A1P27658 744 aa3.57□□□□□ -1.84
USP3-209ENST00000558925 CLCN1P35523 988 aa3.57□□□□□ -1.84
USP3-209ENST00000558925 VASH1Q7L8A9 365 aaPredicted RBP3.57□□□□□ -1.84
USP3-209ENST00000558925 SH3BP5LQ7L8J4 393 aa3.57□□□□□ -1.84
USP3-209ENST00000558925 TRMT44Q8IYL2 757 aaKnown RBP3.57□□□□□ -1.84
USP3-209ENST00000558925 BEND7Q8N7W2 519 aaPredicted RBP3.57□□□□□ -1.84
USP3-209ENST00000558925 ACDQ96AP0 544 aa3.57□□□□□ -1.84
USP3-209ENST00000558925 IGF1RP08069 1367 aa3.56□□□□□ -1.84
USP3-209ENST00000558925 RELBQ01201 579 aa3.56□□□□□ -1.84
USP3-209ENST00000558925 FOXD4L5Q5VV16 416 aaPredicted RBP3.56□□□□□ -1.84
USP3-209ENST00000558925 KRTAP19-1Q8IUB9 90 aa3.56□□□□□ -1.84
USP3-209ENST00000558925 MINK1Q8N4C8 1332 aaPredicted RBP3.55□□□□□ -1.84
USP3-209ENST00000558925 SPDYE5A6NIY4 337 aa3.55□□□□□ -1.84
USP3-209ENST00000558925 BCRP11274 1271 aa3.55□□□□□ -1.84
USP3-209ENST00000558925 SSTR3P32745 418 aaPredicted RBP3.55□□□□□ -1.84
USP3-209ENST00000558925 KDF1Q8NAX2 398 aaPredicted RBP3.55□□□□□ -1.84
USP3-209ENST00000558925 ZNF837Q96EG3 531 aaPredicted RBP3.55□□□□□ -1.84
USP3-209ENST00000558925 ZNF395Q9H8N7 513 aaPredicted RBP3.55□□□□□ -1.84
USP3-209ENST00000558925 ENAMQ9NRM1 1142 aa3.55□□□□□ -1.84
USP3-209ENST00000558925 MBIPQ9NS73 344 aa3.55□□□□□ -1.84
USP3-209ENST00000558925 MAGEB6P1A0A0J9YX57 407 aa3.54□□□□□ -1.84
USP3-209ENST00000558925 HRCP23327 699 aa3.54□□□□□ -1.84
USP3-209ENST00000558925 C1orf229Q6ZS94 237 aaPredicted RBP3.54□□□□□ -1.84
USP3-209ENST00000558925 NEDD1Q8NHV4 660 aa3.54□□□□□ -1.84
USP3-209ENST00000558925 CABLES1Q8TDN4 633 aa3.54□□□□□ -1.84
USP3-209ENST00000558925 POLMQ9NP87 494 aaPredicted RBP3.54□□□□□ -1.84
USP3-209ENST00000558925 SHISA8B8ZZ34 492 aa3.53□□□□□ -1.84
USP3-209ENST00000558925 DBN1Q16643 649 aa3.53□□□□□ -1.84
USP3-209ENST00000558925 FOXD4L6Q3SYB3 417 aaPredicted RBP3.53□□□□□ -1.84
USP3-209ENST00000558925 ERFEQ4G0M1 354 aa3.53□□□□□ -1.84
USP3-209ENST00000558925 RSBN1LQ6PCB5 846 aaPredicted RBP3.53□□□□□ -1.84
USP3-209ENST00000558925 FOXD4L3Q6VB84 417 aaPredicted RBP3.53□□□□□ -1.84
USP3-209ENST00000558925 PODNQ7Z5L7 613 aa3.53□□□□□ -1.84
USP3-209ENST00000558925 CARD14Q9BXL6 1004 aa3.53□□□□□ -1.84
USP3-209ENST00000558925 SUV39H2Q9H5I1 410 aa3.53□□□□□ -1.84
USP3-209ENST00000558925 RHOQP17081 205 aa3.52□□□□□ -1.85
USP3-209ENST00000558925 HOXB4P17483 251 aaPredicted RBP3.52□□□□□ -1.85
USP3-209ENST00000558925 DHX30Q7L2E3 1194 aaKnown RBP eCLIP3.52□□□□□ -1.85
USP3-209ENST00000558925 PGPEP1Q9NXJ5 209 aa3.52□□□□□ -1.85
USP3-209ENST00000558925 BTBD11A6QL63 1104 aa3.51□□□□□ -1.85
USP3-209ENST00000558925 OIP5O43482 229 aa3.51□□□□□ -1.85
USP3-209ENST00000558925 ADD1P35611 737 aaKnown RBP3.51□□□□□ -1.85
USP3-209ENST00000558925 INTS6LQ5JSJ4 861 aaKnown RBP3.51□□□□□ -1.85
USP3-209ENST00000558925 TBC1D2Q9BYX2 928 aa3.51□□□□□ -1.85
USP3-209ENST00000558925 TMPRSS4Q9NRS4 437 aa3.51□□□□□ -1.85
USP3-209ENST00000558925 C1QTNF9BB2RNN3 333 aa3.5□□□□□ -1.85
USP3-209ENST00000558925 LILRA1O75019 489 aa3.5□□□□□ -1.85
USP3-209ENST00000558925 THBS1P07996 1170 aa3.5□□□□□ -1.85
USP3-209ENST00000558925 GJA5P36382 358 aa3.5□□□□□ -1.85
USP3-209ENST00000558925 CHRNA4P43681 627 aa3.5□□□□□ -1.85
USP3-209ENST00000558925 PRICKLE2Q7Z3G6 844 aa3.5□□□□□ -1.85
USP3-209ENST00000558925 CD163Q86VB7 1156 aa3.5□□□□□ -1.85
USP3-209ENST00000558925 TRIM22Q8IYM9 498 aa3.5□□□□□ -1.85
USP3-209ENST00000558925 GTPBP3Q969Y2 492 aaKnown RBP3.5□□□□□ -1.85
USP3-209ENST00000558925 KCTD15Q96SI1 283 aaPredicted RBP3.5□□□□□ -1.85
USP3-209ENST00000558925 OCSTAMPQ9BR26 566 aa3.5□□□□□ -1.85
USP3-209ENST00000558925 QPCTQ16769 361 aa3.49□□□□□ -1.85
USP3-209ENST00000558925 CSPP1Q1MSJ5 1256 aa3.49□□□□□ -1.85
USP3-209ENST00000558925 LINC00114Q6XXX2 140 aa3.49□□□□□ -1.85
USP3-209ENST00000558925 LYSMD3Q7Z3D4 306 aa3.49□□□□□ -1.85
USP3-209ENST00000558925 ZNF784Q8NCA9 323 aaPredicted RBP3.49□□□□□ -1.85
USP3-209ENST00000558925 BEGAINQ9BUH8 593 aa3.49□□□□□ -1.85
USP3-209ENST00000558925 SEMA6BQ9H3T3 888 aa3.49□□□□□ -1.85
USP3-209ENST00000558925 ZBTB3Q9H5J0 574 aa3.49□□□□□ -1.85
USP3-209ENST00000558925 LRRC4BQ9NT99 713 aa3.49□□□□□ -1.85
USP3-209ENST00000558925 ADH1AP07327 375 aa3.48□□□□□ -1.85
USP3-209ENST00000558925 GRIN2CQ14957 1233 aa3.48□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 7.4 ms