RNA–Protein interactions for RNA: ENST00000558919.1

VPS13C-207, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 5

Gene VPS13C, Length 566 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-207ENST00000558919 AAASQ9NRG9 546 aa7.97□□□□□ -1.13
VPS13C-207ENST00000558919 UBTFP17480 764 aaKnown RBP7.96□□□□□ -1.14
VPS13C-207ENST00000558919 FSHRP23945 695 aa7.96□□□□□ -1.14
VPS13C-207ENST00000558919 ABL2P42684 1182 aa7.96□□□□□ -1.14
VPS13C-207ENST00000558919 RAD21O60216 631 aa7.95□□□□□ -1.14
VPS13C-207ENST00000558919 NR3C2P08235 984 aa7.95□□□□□ -1.14
VPS13C-207ENST00000558919 WASHC4Q2M389 1173 aa7.95□□□□□ -1.14
VPS13C-207ENST00000558919 PCDHB9Q9Y5E1 797 aa7.95□□□□□ -1.14
VPS13C-207ENST00000558919 CCDC116Q8IYX3 515 aa7.94□□□□□ -1.14
VPS13C-207ENST00000558919 KLF16Q9BXK1 252 aaPredicted RBP7.94□□□□□ -1.14
VPS13C-207ENST00000558919 ESPNB1AK53 854 aa7.93□□□□□ -1.14
VPS13C-207ENST00000558919 ST8SIA5O15466 376 aa7.93□□□□□ -1.14
VPS13C-207ENST00000558919 TIMP2P16035 220 aa7.93□□□□□ -1.14
VPS13C-207ENST00000558919 WDR4P57081 412 aaKnown RBP7.93□□□□□ -1.14
VPS13C-207ENST00000558919 DHX9Q08211 1270 aaKnown RBP7.93□□□□□ -1.14
VPS13C-207ENST00000558919 WWC1Q8IX03 1113 aa7.93□□□□□ -1.14
VPS13C-207ENST00000558919 SEPT12Q8IYM1 358 aa7.93□□□□□ -1.14
VPS13C-207ENST00000558919 POM121Q96HA1 1249 aa7.93□□□□□ -1.14
VPS13C-207ENST00000558919 EMILIN1Q9Y6C2 1016 aa7.93□□□□□ -1.14
VPS13C-207ENST00000558919 CAPN5O15484 640 aaPredicted RBP7.92□□□□□ -1.14
VPS13C-207ENST00000558919 EIF4G2P78344 907 aaKnown RBP eCLIP7.92□□□□□ -1.14
VPS13C-207ENST00000558919 INTS6LQ5JSJ4 861 aaKnown RBP7.92□□□□□ -1.14
VPS13C-207ENST00000558919 CCDC125Q86Z20 511 aa7.92□□□□□ -1.14
VPS13C-207ENST00000558919 ZIC2O95409 532 aaPredicted RBP7.91□□□□□ -1.14
VPS13C-207ENST00000558919 VAC14Q08AM6 782 aa7.91□□□□□ -1.14
VPS13C-207ENST00000558919 PPP1R26Q5T8A7 1209 aaPredicted RBP7.9□□□□□ -1.14
VPS13C-207ENST00000558919 RNF20Q5VTR2 975 aa7.9□□□□□ -1.14
VPS13C-207ENST00000558919 ITPKCQ96DU7 683 aa7.9□□□□□ -1.14
VPS13C-207ENST00000558919 PGPEP1Q9NXJ5 209 aa7.9□□□□□ -1.14
VPS13C-207ENST00000558919 GIGYF1O75420 1035 aaPredicted RBP7.89□□□□□ -1.15
VPS13C-207ENST00000558919 SOX11P35716 441 aa7.89□□□□□ -1.15
VPS13C-207ENST00000558919 TRIM52Q96A61 297 aa7.89□□□□□ -1.15
VPS13C-207ENST00000558919 ATP13A2Q9NQ11 1180 aa7.89□□□□□ -1.15
VPS13C-207ENST00000558919 ZFAND3Q9H8U3 227 aa7.88□□□□□ -1.15
VPS13C-207ENST00000558919 CEP126Q9P2H0 1117 aa7.88□□□□□ -1.15
VPS13C-207ENST00000558919 DACH1Q9UI36 760 aa7.88□□□□□ -1.15
VPS13C-207ENST00000558919 GTF3C3Q9Y5Q9 886 aa7.88□□□□□ -1.15
VPS13C-207ENST00000558919 A6NJR5 290 aa7.87□□□□□ -1.15
VPS13C-207ENST00000558919 ERVH48-1M5A8F1 160 aa7.87□□□□□ -1.15
VPS13C-207ENST00000558919 CLUAP1Q96AJ1 413 aa7.87□□□□□ -1.15
VPS13C-207ENST00000558919 RAB15P59190 212 aa7.86□□□□□ -1.15
VPS13C-207ENST00000558919 SEMA3FQ13275 785 aa7.86□□□□□ -1.15
VPS13C-207ENST00000558919 MRPL14Q6P1L8 145 aaKnown RBP7.85□□□□□ -1.15
VPS13C-207ENST00000558919 Q6ZVU0 165 aa7.85□□□□□ -1.15
VPS13C-207ENST00000558919 TRIM46Q7Z4K8 759 aa7.85□□□□□ -1.15
VPS13C-207ENST00000558919 PROSER2Q86WR7 435 aaPredicted RBP7.85□□□□□ -1.15
VPS13C-207ENST00000558919 FNBP4Q8N3X1 1017 aaPredicted RBP7.85□□□□□ -1.15
VPS13C-207ENST00000558919 MEIOBQ8N635 442 aa7.85□□□□□ -1.15
VPS13C-207ENST00000558919 SENP2Q9HC62 589 aa7.85□□□□□ -1.15
VPS13C-207ENST00000558919 TMPRSS4Q9NRS4 437 aa7.85□□□□□ -1.15
VPS13C-207ENST00000558919 ZNF784Q8NCA9 323 aaPredicted RBP7.84□□□□□ -1.15
VPS13C-207ENST00000558919 GMPR2Q9P2T1 348 aaKnown RBP7.84□□□□□ -1.15
VPS13C-207ENST00000558919 BMP1P13497 986 aa7.83□□□□□ -1.16
VPS13C-207ENST00000558919 SLFNL1Q499Z3 407 aa7.83□□□□□ -1.16
VPS13C-207ENST00000558919 ZNF787Q6DD87 383 aa7.83□□□□□ -1.16
VPS13C-207ENST00000558919 PHTF2Q8N3S3 785 aa7.83□□□□□ -1.16
VPS13C-207ENST00000558919 KIFC2Q96AC6 838 aa7.83□□□□□ -1.16
VPS13C-207ENST00000558919 ALG2Q9H553 416 aa7.83□□□□□ -1.16
VPS13C-207ENST00000558919 LILRA1O75019 489 aa7.82□□□□□ -1.16
VPS13C-207ENST00000558919 UPP2O95045 317 aa7.82□□□□□ -1.16
VPS13C-207ENST00000558919 CBLBQ13191 982 aa7.82□□□□□ -1.16
VPS13C-207ENST00000558919 SCARF1Q14162 830 aa7.82□□□□□ -1.16
VPS13C-207ENST00000558919 TSEN34Q9BSV6 310 aaKnown RBP7.82□□□□□ -1.16
VPS13C-207ENST00000558919 POTECB2RU33 542 aa7.81□□□□□ -1.16
VPS13C-207ENST00000558919 ERVK-9P63128 1117 aa7.81□□□□□ -1.16
VPS13C-207ENST00000558919 LINC00528Q8N1L1 170 aa7.81□□□□□ -1.16
VPS13C-207ENST00000558919 TRIM47Q96LD4 638 aa7.81□□□□□ -1.16
VPS13C-207ENST00000558919 CHIC2Q9UKJ5 165 aa7.81□□□□□ -1.16
VPS13C-207ENST00000558919 PCDHB11Q9Y5F2 797 aa7.81□□□□□ -1.16
VPS13C-207ENST00000558919 POM121CA8CG34 1229 aa7.8□□□□□ -1.16
VPS13C-207ENST00000558919 CC2D2BQ6DHV5 1058 aa7.8□□□□□ -1.16
VPS13C-207ENST00000558919 RNF135Q8IUD6 432 aa7.8□□□□□ -1.16
VPS13C-207ENST00000558919 ZFP42Q96MM3 310 aa7.8□□□□□ -1.16
VPS13C-207ENST00000558919 CCDC85AQ96PX6 553 aaPredicted RBP7.8□□□□□ -1.16
VPS13C-207ENST00000558919 C11orf95C9JLR9 678 aaPredicted RBP7.79□□□□□ -1.16
VPS13C-207ENST00000558919 ADH1AP07327 375 aa7.79□□□□□ -1.16
VPS13C-207ENST00000558919 ADD1P35611 737 aaKnown RBP7.79□□□□□ -1.16
VPS13C-207ENST00000558919 PURBQ96QR8 312 aaKnown RBP7.79□□□□□ -1.16
VPS13C-207ENST00000558919 CYLDQ9NQC7 956 aa7.79□□□□□ -1.16
VPS13C-207ENST00000558919 BMP2P12643 396 aa7.78□□□□□ -1.16
VPS13C-207ENST00000558919 MAP7D1Q3KQU3 841 aa7.78□□□□□ -1.16
VPS13C-207ENST00000558919 DOLKQ9UPQ8 538 aa7.78□□□□□ -1.16
VPS13C-207ENST00000558919 C6orf118Q5T5N4 469 aa7.77□□□□□ -1.17
VPS13C-207ENST00000558919 HDGFL1Q5TGJ6 251 aa7.77□□□□□ -1.17
VPS13C-207ENST00000558919 ADAMTS19Q8TE59 1207 aa7.77□□□□□ -1.17
VPS13C-207ENST00000558919 ZNF775Q96BV0 537 aaPredicted RBP7.77□□□□□ -1.17
VPS13C-207ENST00000558919 ESF1Q9H501 851 aaKnown RBP7.77□□□□□ -1.17
VPS13C-207ENST00000558919 SPINT1O43278 529 aa7.76□□□□□ -1.17
VPS13C-207ENST00000558919 TRAK2O60296 914 aa7.76□□□□□ -1.17
VPS13C-207ENST00000558919 PTGIRP43119 386 aa7.76□□□□□ -1.17
VPS13C-207ENST00000558919 SCTRP47872 440 aa7.76□□□□□ -1.17
VPS13C-207ENST00000558919 USP4Q13107 963 aa7.76□□□□□ -1.17
VPS13C-207ENST00000558919 TSGA10IPQ3SY00 556 aa7.76□□□□□ -1.17
VPS13C-207ENST00000558919 PLPP7Q8NBV4 271 aa7.76□□□□□ -1.17
VPS13C-207ENST00000558919 NFATC2IPQ8NCF5 419 aa7.76□□□□□ -1.17
VPS13C-207ENST00000558919 SIRT1Q96EB6 747 aa7.76□□□□□ -1.17
VPS13C-207ENST00000558919 AGBL1Q96MI9 1066 aa7.76□□□□□ -1.17
VPS13C-207ENST00000558919 CDCA7Q9BWT1 371 aaPredicted RBP7.76□□□□□ -1.17
VPS13C-207ENST00000558919 ZMYND15Q9H091 742 aa7.76□□□□□ -1.17
VPS13C-207ENST00000558919 ATP5J2-PTCD1G3V325 749 aa7.75□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms