RNA–Protein interactions for RNA: ENST00000558157.5

USP3-206, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,439 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-206ENST00000558157 EDC4Q6P2E9 1401 aaKnown RBP13.73□□□□□ -0.21
USP3-206ENST00000558157 ZNF521Q96K83 1311 aa13.73□□□□□ -0.21
USP3-206ENST00000558157 TMEM94Q12767 1356 aa13.72□□□□□ -0.21
USP3-206ENST00000558157 PTMSP20962 102 aa13.72□□□□□ -0.21
USP3-206ENST00000558157 MTERF4Q7Z6M4 381 aaKnown RBP13.72□□□□□ -0.21
USP3-206ENST00000558157 TBC1D2Q9BYX2 928 aa13.72□□□□□ -0.21
USP3-206ENST00000558157 ACEP12821 1306 aa13.72□□□□□ -0.21
USP3-206ENST00000558157 PLEKHG3A1L390 1219 aa13.71□□□□□ -0.21
USP3-206ENST00000558157 PPP2R1AP30153 589 aa13.71□□□□□ -0.21
USP3-206ENST00000558157 GOLGA2Q08379 1002 aa13.71□□□□□ -0.21
USP3-206ENST00000558157 ZNF335Q9H4Z2 1342 aaPredicted RBP13.71□□□□□ -0.21
USP3-206ENST00000558157 ERBB4Q15303 1308 aa13.71□□□□□ -0.22
USP3-206ENST00000558157 MORC1Q86VD1 984 aa13.7□□□□□ -0.22
USP3-206ENST00000558157 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.7□□□□□ -0.229e-8■■■■□ 26.3
USP3-206ENST00000558157 PMFBP1Q8TBY8 1022 aa13.7□□□□□ -0.22
USP3-206ENST00000558157 PDZRN4Q6ZMN7 1036 aaPredicted RBP13.7□□□□□ -0.22
USP3-206ENST00000558157 GGNBP2Q9H3C7 697 aa13.7□□□□□ -0.22
USP3-206ENST00000558157 USP6P35125 1406 aa13.69□□□□□ -0.22
USP3-206ENST00000558157 KIAA1211Q6ZU35 1233 aa13.69□□□□□ -0.22
USP3-206ENST00000558157 POLR3AO14802 1390 aaPredicted RBP13.69□□□□□ -0.22
USP3-206ENST00000558157 NCOA3Q9Y6Q9 1424 aa13.69□□□□□ -0.22
USP3-206ENST00000558157 LRRC7Q96NW7 1537 aa13.69□□□□□ -0.22
USP3-206ENST00000558157 FYB1O15117 783 aa13.69□□□□□ -0.22
USP3-206ENST00000558157 RBM10P98175 930 aaKnown RBP13.69□□□□□ -0.22
USP3-206ENST00000558157 PDE3AQ14432 1141 aa13.69□□□□□ -0.22
USP3-206ENST00000558157 OFD1O75665 1012 aa13.68□□□□□ -0.22
USP3-206ENST00000558157 SEC24BO95487 1268 aa13.68□□□□□ -0.22
USP3-206ENST00000558157 SMAP1Q8IYB5 467 aaPredicted RBP13.68□□□□□ -0.22
USP3-206ENST00000558157 TRMT2AQ8IZ69 625 aaKnown RBP13.68□□□□□ -0.22
USP3-206ENST00000558157 ZNF692Q9BU19 519 aaPredicted RBP13.68□□□□□ -0.22
USP3-206ENST00000558157 TNNT2P45379 298 aaPredicted RBP13.68□□□□□ -0.22
USP3-206ENST00000558157 GZF1Q9H116 711 aaPredicted RBP13.68□□□□□ -0.22
USP3-206ENST00000558157 DCCP43146 1447 aa13.67□□□□□ -0.22
USP3-206ENST00000558157 CCDC173Q0VFZ6 552 aa13.67□□□□□ -0.22
USP3-206ENST00000558157 SKOR2Q2VWA4 1001 aaPredicted RBP13.67□□□□□ -0.22
USP3-206ENST00000558157 SLFN5Q08AF3 891 aa13.66□□□□□ -0.22
USP3-206ENST00000558157 NGDNQ8NEJ9 315 aaKnown RBP13.66□□□□□ -0.22
USP3-206ENST00000558157 ARXQ96QS3 562 aa13.66□□□□□ -0.22
USP3-206ENST00000558157 C19orf44Q9H6X5 657 aa13.66□□□□□ -0.22
USP3-206ENST00000558157 DMRT2Q9Y5R5 561 aa13.66□□□□□ -0.22
USP3-206ENST00000558157 NME9Q86XW9 330 aa13.66□□□□□ -0.22
USP3-206ENST00000558157 SSH2Q76I76 1423 aa13.66□□□□□ -0.22
USP3-206ENST00000558157 TTC21BQ7Z4L5 1316 aa13.66□□□□□ -0.22
USP3-206ENST00000558157 ZSCAN30Q86W11 494 aa13.65□□□□□ -0.22
USP3-206ENST00000558157 NGEFQ8N5V2 710 aa13.65□□□□□ -0.22
USP3-206ENST00000558157 PPP1R9BQ96SB3 815 aa13.65□□□□□ -0.22
USP3-206ENST00000558157 C1orf167Q5SNV9 1468 aa13.65□□□□□ -0.22
USP3-206ENST00000558157 PHF8Q9UPP1 1060 aa13.65□□□□□ -0.22
USP3-206ENST00000558157 KIF1AQ12756 1690 aa13.65□□□□□ -0.22
USP3-206ENST00000558157 MST1RQ04912 1400 aa13.65□□□□□ -0.22
USP3-206ENST00000558157 ZRANB1Q9UGI0 708 aa13.64□□□□□ -0.23
USP3-206ENST00000558157 MSH6P52701 1360 aa13.64□□□□□ -0.23
USP3-206ENST00000558157 PIK3C2AO00443 1686 aa13.64□□□□□ -0.23
USP3-206ENST00000558157 IGHDP01880 384 aa13.64□□□□□ -0.23
USP3-206ENST00000558157 HS1BP3Q53T59 392 aa13.64□□□□□ -0.23
USP3-206ENST00000558157 ESCO1Q5FWF5 840 aa13.64□□□□□ -0.23
USP3-206ENST00000558157 CLUAP1Q96AJ1 413 aa13.64□□□□□ -0.23
USP3-206ENST00000558157 ADAMTS8Q9UP79 889 aa13.63□□□□□ -0.23
USP3-206ENST00000558157 ATF3P18847 181 aa13.63□□□□□ -0.23
USP3-206ENST00000558157 ORAI2Q96SN7 254 aa13.63□□□□□ -0.23
USP3-206ENST00000558157 CIZ1Q9ULV3 898 aaPredicted RBP13.63□□□□□ -0.23
USP3-206ENST00000558157 WDR43Q15061 677 aaKnown RBP eCLIP13.62□□□□□ -0.23
USP3-206ENST00000558157 OVOS2A0A0J9YW53 1432 aa13.62□□□□□ -0.23
USP3-206ENST00000558157 OVOS2Q6IE36 1432 aa13.62□□□□□ -0.23
USP3-206ENST00000558157 ANP32BQ92688 251 aaKnown RBP13.62□□□□□ -0.23
USP3-206ENST00000558157 IBTKQ9P2D0 1353 aaPredicted RBP13.62□□□□□ -0.23
USP3-206ENST00000558157 SHPRHQ149N8 1683 aa13.62□□□□□ -0.23
USP3-206ENST00000558157 FGD1P98174 961 aa13.61□□□□□ -0.23
USP3-206ENST00000558157 TTC21AQ8NDW8 1320 aa13.61□□□□□ -0.23
USP3-206ENST00000558157 NCLP19338 710 aaKnown RBP13.61□□□□□ -0.23
USP3-206ENST00000558157 MARF1Q9Y4F3 1742 aaKnown RBP13.61□□□□□ -0.23
USP3-206ENST00000558157 MSNP26038 577 aaKnown RBP13.6□□□□□ -0.23
USP3-206ENST00000558157 RIPK4P57078 832 aa13.6□□□□□ -0.23
USP3-206ENST00000558157 UTP14CQ5TAP6 766 aaKnown RBP13.6□□□□□ -0.23
USP3-206ENST00000558157 CADPS2Q86UW7 1296 aa13.6□□□□□ -0.23
USP3-206ENST00000558157 COG3Q96JB2 828 aa13.6□□□□□ -0.23
USP3-206ENST00000558157 GBP4Q96PP9 640 aa13.6□□□□□ -0.23
USP3-206ENST00000558157 USP54Q70EL1 1684 aa13.6□□□□□ -0.23
USP3-206ENST00000558157 E9PSI1 815 aa13.6□□□□□ -0.23
USP3-206ENST00000558157 MTHFSP49914 203 aa13.59□□□□□ -0.23
USP3-206ENST00000558157 MAP2P11137 1827 aaKnown RBP13.59□□□□□ -0.23
USP3-206ENST00000558157 TRPM3Q9HCF6 1732 aaPredicted RBP13.59□□□□□ -0.23
USP3-206ENST00000558157 DDIT3P35638 169 aa13.59□□□□□ -0.23
USP3-206ENST00000558157 LTBP4Q8N2S1 1624 aa13.58□□□□□ -0.24
USP3-206ENST00000558157 DYNC1I1O14576 645 aa13.58□□□□□ -0.24
USP3-206ENST00000558157 FBLN1P23142 703 aa13.58□□□□□ -0.24
USP3-206ENST00000558157 HSCBQ8IWL3 235 aa13.58□□□□□ -0.24
USP3-206ENST00000558157 COL3A1P02461 1466 aaPredicted RBP13.58□□□□□ -0.24
USP3-206ENST00000558157 USP31Q70CQ4 1352 aa13.57□□□□□ -0.24
USP3-206ENST00000558157 FOXO3O43524 673 aa13.56□□□□□ -0.24
USP3-206ENST00000558157 ZNF500O60304 480 aaPredicted RBP13.56□□□□□ -0.24
USP3-206ENST00000558157 PSME1Q06323 249 aa13.56□□□□□ -0.24
USP3-206ENST00000558157 AATKQ6ZMQ8 1374 aa13.56□□□□□ -0.24
USP3-206ENST00000558157 XPCQ01831 940 aaPredicted RBP13.56□□□□□ -0.24
USP3-206ENST00000558157 C22orf23Q9BZE7 217 aa13.56□□□□□ -0.24
USP3-206ENST00000558157 CSPP1Q1MSJ5 1256 aa13.55□□□□□ -0.24
USP3-206ENST00000558157 SNX21Q969T3 373 aa13.55□□□□□ -0.24
USP3-206ENST00000558157 CFAP53Q96M91 514 aa13.55□□□□□ -0.24
USP3-206ENST00000558157 NASPP49321 788 aaPredicted RBP13.55□□□□□ -0.24
USP3-206ENST00000558157 GAS2L3Q86XJ1 694 aa13.55□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms