RNA–Protein interactions for RNA: ENST00000553529.5

SHMT2-206, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 562 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-206ENST00000553529 CCER1Q8TC90 406 aaPredicted RBP25.66■■□□□ 1.7
SHMT2-206ENST00000553529 OVOS2A0A0J9YW53 1432 aa25.65■■□□□ 1.7
SHMT2-206ENST00000553529 OVOS2Q6IE36 1432 aa25.65■■□□□ 1.7
SHMT2-206ENST00000553529 PARP4Q9UKK3 1724 aaKnown RBP25.65■■□□□ 1.7
SHMT2-206ENST00000553529 MYOM1P52179 1685 aa25.64■■□□□ 1.7
SHMT2-206ENST00000553529 CCDC125Q86Z20 511 aa25.64■■□□□ 1.7
SHMT2-206ENST00000553529 RGPD1P0DJD0 1748 aa25.63■■□□□ 1.69
SHMT2-206ENST00000553529 TOM1L2Q6ZVM7 507 aa25.63■■□□□ 1.69
SHMT2-206ENST00000553529 KCNH5Q8NCM2 988 aa25.62■■□□□ 1.69
SHMT2-206ENST00000553529 TERF2IPQ9NYB0 399 aa25.62■■□□□ 1.69
SHMT2-206ENST00000553529 TRIM37O94972 964 aa25.61■■□□□ 1.69
SHMT2-206ENST00000553529 EN1Q05925 392 aaPredicted RBP25.61■■□□□ 1.69
SHMT2-206ENST00000553529 WDR17Q8IZU2 1322 aa25.61■■□□□ 1.69
SHMT2-206ENST00000553529 CLSPNQ9HAW4 1339 aa25.61■■□□□ 1.69
SHMT2-206ENST00000553529 PUS7Q96PZ0 661 aaKnown RBP25.6■■□□□ 1.69
SHMT2-206ENST00000553529 TMF1P82094 1093 aa25.59■■□□□ 1.69
SHMT2-206ENST00000553529 SF3B2Q13435 895 aaKnown RBP25.59■■□□□ 1.69
SHMT2-206ENST00000553529 PEAK1Q9H792 1746 aa25.58■■□□□ 1.69
SHMT2-206ENST00000553529 ANKRD36BQ8N2N9 1353 aa25.57■■□□□ 1.68
SHMT2-206ENST00000553529 CSB-PGBD3P0DP91 1061 aa25.57■■□□□ 1.68
SHMT2-206ENST00000553529 PDE3BQ13370 1112 aa25.56■■□□□ 1.68
SHMT2-206ENST00000553529 PTF1AQ7RTS3 328 aa25.56■■□□□ 1.68
SHMT2-206ENST00000553529 THRAP3Q9Y2W1 955 aaKnown RBP25.55■■□□□ 1.68
SHMT2-206ENST00000553529 EZH2Q15910 746 aaKnown RBP25.54■■□□□ 1.68
SHMT2-206ENST00000553529 GGNBP2Q9H3C7 697 aa25.54■■□□□ 1.68
SHMT2-206ENST00000553529 TIMELESSQ9UNS1 1208 aa25.54■■□□□ 1.68
SHMT2-206ENST00000553529 NINLQ9Y2I6 1382 aa25.54■■□□□ 1.68
SHMT2-206ENST00000553529 DISP2A7MBM2 1401 aa25.54■■□□□ 1.68
SHMT2-206ENST00000553529 PSDA5PKW4 1024 aaPredicted RBP25.52■■□□□ 1.68
SHMT2-206ENST00000553529 FAM196AQ6ZSG2 479 aa25.52■■□□□ 1.68
SHMT2-206ENST00000553529 BAG6P46379 1132 aa25.51■■□□□ 1.67
SHMT2-206ENST00000553529 CARD14Q9BXL6 1004 aa25.51■■□□□ 1.67
SHMT2-206ENST00000553529 ERBB3P21860 1342 aa25.51■■□□□ 1.67
SHMT2-206ENST00000553529 ABCC6O95255 1503 aa25.51■■□□□ 1.67
SHMT2-206ENST00000553529 KIF20BQ96Q89 1820 aa25.51■■□□□ 1.67
SHMT2-206ENST00000553529 RGPD2P0DJD1 1756 aa25.5■■□□□ 1.67
SHMT2-206ENST00000553529 LTV1Q96GA3 475 aaPredicted RBP25.5■■□□□ 1.67
SHMT2-206ENST00000553529 POLR3GLQ9BT43 218 aa25.5■■□□□ 1.67
SHMT2-206ENST00000553529 SBF2Q86WG5 1849 aa25.49■■□□□ 1.67
SHMT2-206ENST00000553529 MAP3K19Q56UN5 1328 aa25.49■■□□□ 1.67
SHMT2-206ENST00000553529 FYB1O15117 783 aa25.49■■□□□ 1.67
SHMT2-206ENST00000553529 MARCH10Q8NA82 808 aaPredicted RBP25.49■■□□□ 1.67
SHMT2-206ENST00000553529 ANKRD24Q8TF21 1146 aa25.49■■□□□ 1.67
SHMT2-206ENST00000553529 CARD10Q9BWT7 1032 aa25.49■■□□□ 1.67
SHMT2-206ENST00000553529 HSPA5P11021 654 aaKnown RBP25.48■■□□□ 1.67
SHMT2-206ENST00000553529 RRS1Q15050 365 aaKnown RBP25.48■■□□□ 1.67
SHMT2-206ENST00000553529 DDB1Q16531 1140 aa25.48■■□□□ 1.67
SHMT2-206ENST00000553529 APBA3O96018 575 aa25.47■■□□□ 1.67
SHMT2-206ENST00000553529 COG3Q96JB2 828 aa25.47■■□□□ 1.67
SHMT2-206ENST00000553529 NLRP2Q9NX02 1062 aa25.47■■□□□ 1.67
SHMT2-206ENST00000553529 CAMKK2Q96RR4 588 aa25.46■■□□□ 1.67
SHMT2-206ENST00000553529 NSD3Q9BZ95 1437 aa25.46■■□□□ 1.67
SHMT2-206ENST00000553529 OVOS2A0A0G2JMS6 1433 aa25.45■■□□□ 1.66
SHMT2-206ENST00000553529 NUP188Q5SRE5 1749 aa25.44■■□□□ 1.66
SHMT2-206ENST00000553529 RREB1Q92766 1687 aa25.44■■□□□ 1.66
SHMT2-206ENST00000553529 C11orf95C9JLR9 678 aaPredicted RBP25.42■■□□□ 1.66
SHMT2-206ENST00000553529 HOXC9P31274 260 aa25.42■■□□□ 1.66
SHMT2-206ENST00000553529 IP6K1Q92551 441 aa25.42■■□□□ 1.66
SHMT2-206ENST00000553529 CCDC7Q96M83 1385 aa25.42■■□□□ 1.66
SHMT2-206ENST00000553529 FAM208AQ9UK61 1670 aaKnown RBP25.42■■□□□ 1.66
SHMT2-206ENST00000553529 TNS2Q63HR2 1409 aa25.4■■□□□ 1.66
SHMT2-206ENST00000553529 SRCAPQ6ZRS2 3230 aa25.39■■□□□ 1.66
SHMT2-206ENST00000553529 SLC24A1O60721 1099 aa25.39■■□□□ 1.66
SHMT2-206ENST00000553529 R3HDM1Q15032 1099 aaKnown RBP25.39■■□□□ 1.66
SHMT2-206ENST00000553529 AMPHP49418 695 aa25.37■■□□□ 1.65
SHMT2-206ENST00000553529 EIF4G2P78344 907 aaKnown RBP eCLIP25.37■■□□□ 1.65
SHMT2-206ENST00000553529 KCNQ2O43526 872 aa25.36■■□□□ 1.65
SHMT2-206ENST00000553529 CDCA8Q53HL2 280 aa25.36■■□□□ 1.65
SHMT2-206ENST00000553529 USHBP1Q8N6Y0 703 aa25.36■■□□□ 1.65
SHMT2-206ENST00000553529 ACSBG1Q96GR2 724 aa25.35■■□□□ 1.65
SHMT2-206ENST00000553529 EXOC5O00471 708 aa25.34■■□□□ 1.65
SHMT2-206ENST00000553529 IL2RBP14784 551 aa25.34■■□□□ 1.65
SHMT2-206ENST00000553529 EMILIN1Q9Y6C2 1016 aa25.34■■□□□ 1.65
SHMT2-206ENST00000553529 SHANK3Q9BYB0 1731 aa25.34■■□□□ 1.65
SHMT2-206ENST00000553529 MEGF6O75095 1541 aa25.33■■□□□ 1.65
SHMT2-206ENST00000553529 CDCA7Q9BWT1 371 aaPredicted RBP25.33■■□□□ 1.65
SHMT2-206ENST00000553529 HSP90AB2PQ58FF8 381 aa25.32■■□□□ 1.64
SHMT2-206ENST00000553529 NBPF6Q5VWK0 638 aa25.3■■□□□ 1.64
SHMT2-206ENST00000553529 NBPF4Q96M43 638 aa25.3■■□□□ 1.64
SHMT2-206ENST00000553529 NHSQ6T4R5 1651 aa25.29■■□□□ 1.64
SHMT2-206ENST00000553529 PROM2Q8N271 834 aa25.29■■□□□ 1.64
SHMT2-206ENST00000553529 BCL11BQ9C0K0 894 aaPredicted RBP25.28■■□□□ 1.64
SHMT2-206ENST00000553529 RTL1A6NKG5 1358 aa25.28■■□□□ 1.64
SHMT2-206ENST00000553529 ANO8Q9HCE9 1232 aaPredicted RBP25.27■■□□□ 1.64
SHMT2-206ENST00000553529 BCL9O00512 1426 aa25.27■■□□□ 1.64
SHMT2-206ENST00000553529 TNNT2P45379 298 aaPredicted RBP25.26■■□□□ 1.63
SHMT2-206ENST00000553529 DDX54Q8TDD1 881 aaKnown RBP25.26■■□□□ 1.63
SHMT2-206ENST00000553529 PANK3Q9H999 370 aa25.26■■□□□ 1.63
SHMT2-206ENST00000553529 ANKRD26Q9UPS8 1709 aa25.26■■□□□ 1.63
SHMT2-206ENST00000553529 LRP5O75197 1615 aa25.25■■□□□ 1.63
SHMT2-206ENST00000553529 RGPD3A6NKT7 1758 aaPredicted RBP25.25■■□□□ 1.63
SHMT2-206ENST00000553529 RGPD4Q7Z3J3 1758 aa25.25■■□□□ 1.63
SHMT2-206ENST00000553529 BTAF1O14981 1849 aa25.24■■□□□ 1.63
SHMT2-206ENST00000553529 PARD3Q8TEW0 1356 aa25.24■■□□□ 1.63
SHMT2-206ENST00000553529 PPM1GO15355 546 aaPredicted RBP25.24■■□□□ 1.63
SHMT2-206ENST00000553529 MAP2P11137 1827 aaKnown RBP25.23■■□□□ 1.63
SHMT2-206ENST00000553529 DOT1LQ8TEK3 1739 aa25.23■■□□□ 1.63
SHMT2-206ENST00000553529 FLT4P35916 1363 aa25.22■■□□□ 1.63
SHMT2-206ENST00000553529 PDGFDQ9GZP0 370 aaPredicted RBP25.22■■□□□ 1.63
SHMT2-206ENST00000553529 INSRP06213 1382 aa25.21■■□□□ 1.63
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms