RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 NUCB1Q02818 461 aa9.45□□□□□ -0.9
LIMA1-213ENST00000552720 ALDH1L2Q3SY69 923 aa9.45□□□□□ -0.9
LIMA1-213ENST00000552720 RRS1Q15050 365 aaKnown RBP9.45□□□□□ -0.9
LIMA1-213ENST00000552720 NFE2L2Q16236 605 aa9.45□□□□□ -0.9
LIMA1-213ENST00000552720 A2ML1A8K2U0 1454 aa9.44□□□□□ -0.9
LIMA1-213ENST00000552720 AK9Q5TCS8 1911 aa9.44□□□□□ -0.9
LIMA1-213ENST00000552720 ZBTB7BO15156 539 aaPredicted RBP9.44□□□□□ -0.9
LIMA1-213ENST00000552720 DCTN1Q14203 1278 aa9.44□□□□□ -0.9
LIMA1-213ENST00000552720 CYB5RLQ6IPT4 315 aa9.44□□□□□ -0.9
LIMA1-213ENST00000552720 CHD1LQ86WJ1 897 aa9.44□□□□□ -0.9
LIMA1-213ENST00000552720 MRPL50Q8N5N7 158 aaKnown RBP9.44□□□□□ -0.9
LIMA1-213ENST00000552720 GZF1Q9H116 711 aaPredicted RBP9.44□□□□□ -0.9
LIMA1-213ENST00000552720 MBIPQ9NS73 344 aa9.44□□□□□ -0.9
LIMA1-213ENST00000552720 ATP7BP35670 1465 aa9.44□□□□□ -0.9
LIMA1-213ENST00000552720 NRXN3Q9Y4C0 1643 aa9.44□□□□□ -0.9
LIMA1-213ENST00000552720 ANKRD45Q5TZF3 282 aa9.44□□□□□ -0.9
LIMA1-213ENST00000552720 PNNQ9H307 717 aaKnown RBP9.44□□□□□ -0.9
LIMA1-213ENST00000552720 CPS1P31327 1500 aa9.44□□□□□ -0.9
LIMA1-213ENST00000552720 KNDC1Q76NI1 1749 aa9.44□□□□□ -0.9
LIMA1-213ENST00000552720 IL13P35225 146 aa9.43□□□□□ -0.9
LIMA1-213ENST00000552720 TXNDC2Q86VQ3 553 aa9.43□□□□□ -0.9
LIMA1-213ENST00000552720 SIRT2Q8IXJ6 389 aa9.43□□□□□ -0.9
LIMA1-213ENST00000552720 C8orf58Q8NAV2 365 aa9.43□□□□□ -0.9
LIMA1-213ENST00000552720 RIMS2Q9UQ26 1411 aa9.43□□□□□ -0.9
LIMA1-213ENST00000552720 METP08581 1390 aa9.42□□□□□ -0.9
LIMA1-213ENST00000552720 MCM4P33991 863 aa9.42□□□□□ -0.9
LIMA1-213ENST00000552720 MON2Q7Z3U7 1717 aa9.42□□□□□ -0.9
LIMA1-213ENST00000552720 DLC1Q96QB1 1528 aa9.42□□□□□ -0.9
LIMA1-213ENST00000552720 FAM69CQ0P6D2 419 aa9.42□□□□□ -0.9
LIMA1-213ENST00000552720 TPRNQ4KMQ1 711 aa9.42□□□□□ -0.9
LIMA1-213ENST00000552720 ZNF692Q9BU19 519 aaPredicted RBP9.42□□□□□ -0.9
LIMA1-213ENST00000552720 ITSN1Q15811 1721 aa9.41□□□□□ -0.9
LIMA1-213ENST00000552720 CPSF1Q10570 1443 aaKnown RBP9.41□□□□□ -0.9
LIMA1-213ENST00000552720 PTCH1Q13635 1447 aa9.41□□□□□ -0.9
LIMA1-213ENST00000552720 WASLO00401 505 aaPredicted RBP9.41□□□□□ -0.9
LIMA1-213ENST00000552720 TWISTNBQ3B726 338 aaPredicted RBP9.41□□□□□ -0.9
LIMA1-213ENST00000552720 AKAP12Q02952 1782 aa9.41□□□□□ -0.9
LIMA1-213ENST00000552720 CD2BP2O95400 341 aaKnown RBP9.41□□□□□ -0.9
LIMA1-213ENST00000552720 ZNF853P0CG23 659 aa9.41□□□□□ -0.9
LIMA1-213ENST00000552720 KRT24Q2M2I5 525 aa9.41□□□□□ -0.9
LIMA1-213ENST00000552720 HSCBQ8IWL3 235 aa9.41□□□□□ -0.9
LIMA1-213ENST00000552720 CHMP5Q9NZZ3 219 aa9.41□□□□□ -0.9
LIMA1-213ENST00000552720 CDK12Q9NYV4 1490 aaPredicted RBP9.4□□□□□ -0.9
LIMA1-213ENST00000552720 EDC4Q6P2E9 1401 aaKnown RBP9.4□□□□□ -0.9
LIMA1-213ENST00000552720 RBM25P49756 843 aaKnown RBP9.4□□□□□ -0.9
LIMA1-213ENST00000552720 BRPF1P55201 1214 aaPredicted RBP9.4□□□□□ -0.9
LIMA1-213ENST00000552720 GNAI1P63096 354 aa9.4□□□□□ -0.9
LIMA1-213ENST00000552720 AEBP1Q8IUX7 1158 aa9.4□□□□□ -0.9
LIMA1-213ENST00000552720 NUDT16Q96DE0 195 aaKnown RBP9.4□□□□□ -0.9
LIMA1-213ENST00000552720 KIF2CQ99661 725 aa9.4□□□□□ -0.9
LIMA1-213ENST00000552720 RBM42Q9BTD8 480 aaKnown RBP9.4□□□□□ -0.9
LIMA1-213ENST00000552720 IFT57Q9NWB7 429 aa9.4□□□□□ -0.9
LIMA1-213ENST00000552720 SPATA31D1Q6ZQQ2 1576 aa9.4□□□□□ -0.9
LIMA1-213ENST00000552720 C3P01024 1663 aa9.4□□□□□ -0.9
LIMA1-213ENST00000552720 ABCC4O15439 1325 aa9.4□□□□□ -0.9
LIMA1-213ENST00000552720 BMP2KLQ5H9B9 411 aa9.4□□□□□ -0.91
LIMA1-213ENST00000552720 PIK3R4Q99570 1358 aa9.39□□□□□ -0.91
LIMA1-213ENST00000552720 NUTM2FA1L443 756 aa9.39□□□□□ -0.91
LIMA1-213ENST00000552720 SLC4A2P04920 1241 aa9.39□□□□□ -0.91
LIMA1-213ENST00000552720 PANK2Q9BZ23 570 aa9.39□□□□□ -0.91
LIMA1-213ENST00000552720 NCOA3Q9Y6Q9 1424 aa9.39□□□□□ -0.91
LIMA1-213ENST00000552720 DIP2BQ9P265 1576 aa9.39□□□□□ -0.91
LIMA1-213ENST00000552720 TBC1D9Q6ZT07 1266 aa9.39□□□□□ -0.91
LIMA1-213ENST00000552720 COG3Q96JB2 828 aa9.39□□□□□ -0.91
LIMA1-213ENST00000552720 CFAP44Q96MT7 982 aa9.39□□□□□ -0.91
LIMA1-213ENST00000552720 PRR36Q9H6K5 1346 aa9.38□□□□□ -0.91
LIMA1-213ENST00000552720 TRAK2O60296 914 aa9.38□□□□□ -0.91
LIMA1-213ENST00000552720 XRCC6P12956 609 aaKnown RBP eCLIP9.38□□□□□ -0.91
LIMA1-213ENST00000552720 ARHGAP45Q92619 1136 aa9.38□□□□□ -0.91
LIMA1-213ENST00000552720 ZNF428Q96B54 188 aa9.38□□□□□ -0.91
LIMA1-213ENST00000552720 GCC1Q96CN9 775 aa9.38□□□□□ -0.91
LIMA1-213ENST00000552720 DDIT3P35638 169 aa9.38□□□□□ -0.91
LIMA1-213ENST00000552720 RIMS1Q86UR5 1692 aaKnown RBP9.37□□□□□ -0.91
LIMA1-213ENST00000552720 GSPT1P15170 499 aaKnown RBP9.37□□□□□ -0.91
LIMA1-213ENST00000552720 C16orf71Q8IYS4 520 aaPredicted RBP9.37□□□□□ -0.91
LIMA1-213ENST00000552720 SOX12O15370 315 aa9.37□□□□□ -0.91
LIMA1-213ENST00000552720 CALD1Q05682 793 aaKnown RBP9.37□□□□□ -0.91
LIMA1-213ENST00000552720 MCM10Q7L590 875 aa9.37□□□□□ -0.91
LIMA1-213ENST00000552720 RRAGDQ9NQL2 400 aaPredicted RBP9.37□□□□□ -0.91
LIMA1-213ENST00000552720 CCDC61Q9Y6R9 512 aa9.37□□□□□ -0.91
LIMA1-213ENST00000552720 AATKQ6ZMQ8 1374 aa9.36□□□□□ -0.91
LIMA1-213ENST00000552720 HSP90AB1P08238 724 aaKnown RBP9.36□□□□□ -0.91
LIMA1-213ENST00000552720 SULT6B1Q6IMI4 303 aa9.36□□□□□ -0.91
LIMA1-213ENST00000552720 FAM43AQ8N2R8 423 aa9.36□□□□□ -0.91
LIMA1-213ENST00000552720 TNPO1Q92973 898 aaKnown RBP9.36□□□□□ -0.91
LIMA1-213ENST00000552720 AGLP35573 1532 aa9.36□□□□□ -0.91
LIMA1-213ENST00000552720 PEAK1Q9H792 1746 aa9.36□□□□□ -0.91
LIMA1-213ENST00000552720 FSD2A1L4K1 749 aa9.36□□□□□ -0.91
LIMA1-213ENST00000552720 GOLGA6L3A6NEY3 463 aa9.36□□□□□ -0.91
LIMA1-213ENST00000552720 APBB1O00213 710 aa9.36□□□□□ -0.91
LIMA1-213ENST00000552720 EIF4A2Q14240 407 aaKnown RBP9.36□□□□□ -0.91
LIMA1-213ENST00000552720 L1TD1Q5T7N2 865 aaKnown RBP9.36□□□□□ -0.91
LIMA1-213ENST00000552720 OTUD7AQ8TE49 926 aaPredicted RBP9.36□□□□□ -0.91
LIMA1-213ENST00000552720 SNX21Q969T3 373 aa9.36□□□□□ -0.91
LIMA1-213ENST00000552720 SIPA1L2Q9P2F8 1722 aaPredicted RBP9.35□□□□□ -0.91
LIMA1-213ENST00000552720 NRKQ7Z2Y5 1582 aa9.35□□□□□ -0.91
LIMA1-213ENST00000552720 REREQ9P2R6 1566 aa9.35□□□□□ -0.91
LIMA1-213ENST00000552720 HSP90AB2PQ58FF8 381 aa9.34□□□□□ -0.91
LIMA1-213ENST00000552720 API5Q9BZZ5 524 aaKnown RBP9.34□□□□□ -0.91
LIMA1-213ENST00000552720 MIS18AQ9NYP9 233 aa9.34□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms