RNA–Protein interactions for RNA: ENST00000549970.5

VPS29-207, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 818 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-207ENST00000549970 TERF2IPQ9NYB0 399 aa23.01■■□□□ 1.27
VPS29-207ENST00000549970 A0A1W2PP64 1363 aa23.01■■□□□ 1.27
VPS29-207ENST00000549970 RGPD5Q99666 1765 aa23■■□□□ 1.27
VPS29-207ENST00000549970 EN1Q05925 392 aaPredicted RBP23■■□□□ 1.27
VPS29-207ENST00000549970 USP31Q70CQ4 1352 aa23■■□□□ 1.27
VPS29-207ENST00000549970 TNS1Q9HBL0 1735 aaKnown RBP22.99■■□□□ 1.27
VPS29-207ENST00000549970 TRIM37O94972 964 aa22.99■■□□□ 1.27
VPS29-207ENST00000549970 WDR17Q8IZU2 1322 aa22.99■■□□□ 1.27
VPS29-207ENST00000549970 PARP4Q9UKK3 1724 aaKnown RBP22.99■■□□□ 1.27
VPS29-207ENST00000549970 EDC4Q6P2E9 1401 aaKnown RBP22.99■■□□□ 1.27
VPS29-207ENST00000549970 USP47Q96K76 1375 aa22.98■■□□□ 1.27
VPS29-207ENST00000549970 USP54Q70EL1 1684 aa22.97■■□□□ 1.27
VPS29-207ENST00000549970 CSB-PGBD3P0DP91 1061 aa22.97■■□□□ 1.27
VPS29-207ENST00000549970 SLC24A1O60721 1099 aa22.96■■□□□ 1.27
VPS29-207ENST00000549970 NINLQ9Y2I6 1382 aa22.95■■□□□ 1.26
VPS29-207ENST00000549970 DISP2A7MBM2 1401 aa22.94■■□□□ 1.26
VPS29-207ENST00000549970 LRRC37A3O60309 1634 aa22.93■■□□□ 1.26
VPS29-207ENST00000549970 ABCC6O95255 1503 aa22.92■■□□□ 1.26
VPS29-207ENST00000549970 WNK3Q9BYP7 1800 aa22.92■■□□□ 1.26
VPS29-207ENST00000549970 LTN1O94822 1766 aa22.92■■□□□ 1.26
VPS29-207ENST00000549970 CLSPNQ9HAW4 1339 aa22.92■■□□□ 1.26
VPS29-207ENST00000549970 TMF1P82094 1093 aa22.92■■□□□ 1.26
VPS29-207ENST00000549970 EZH2Q15910 746 aaKnown RBP22.92■■□□□ 1.26
VPS29-207ENST00000549970 DDB1Q16531 1140 aa22.92■■□□□ 1.26
VPS29-207ENST00000549970 APBA3O96018 575 aa22.91■■□□□ 1.26
VPS29-207ENST00000549970 CARD10Q9BWT7 1032 aa22.91■■□□□ 1.26
VPS29-207ENST00000549970 OVOS2A0A0J9YW53 1432 aa22.91■■□□□ 1.26
VPS29-207ENST00000549970 OVOS2Q6IE36 1432 aa22.91■■□□□ 1.26
VPS29-207ENST00000549970 TIMELESSQ9UNS1 1208 aa22.9■■□□□ 1.26
VPS29-207ENST00000549970 PSDA5PKW4 1024 aaPredicted RBP22.89■■□□□ 1.25
VPS29-207ENST00000549970 OVOS2A0A0G2JMS6 1433 aa22.89■■□□□ 1.25
VPS29-207ENST00000549970 CAMKK2Q96RR4 588 aa22.88■■□□□ 1.25
VPS29-207ENST00000549970 CDCA7Q9BWT1 371 aaPredicted RBP22.88■■□□□ 1.25
VPS29-207ENST00000549970 ANKRD36BQ8N2N9 1353 aa22.88■■□□□ 1.25
VPS29-207ENST00000549970 ERBB3P21860 1342 aa22.86■■□□□ 1.25
VPS29-207ENST00000549970 PEAK1Q9H792 1746 aa22.86■■□□□ 1.25
VPS29-207ENST00000549970 CCDC7Q96M83 1385 aa22.86■■□□□ 1.25
VPS29-207ENST00000549970 C11orf95C9JLR9 678 aaPredicted RBP22.85■■□□□ 1.25
VPS29-207ENST00000549970 COG3Q96JB2 828 aa22.85■■□□□ 1.25
VPS29-207ENST00000549970 NLRP2Q9NX02 1062 aa22.84■■□□□ 1.25
VPS29-207ENST00000549970 ANKRD24Q8TF21 1146 aa22.83■■□□□ 1.25
VPS29-207ENST00000549970 PARD3Q8TEW0 1356 aa22.83■■□□□ 1.25
VPS29-207ENST00000549970 R3HDM1Q15032 1099 aaKnown RBP22.82■■□□□ 1.24
VPS29-207ENST00000549970 CDCA8Q53HL2 280 aa22.82■■□□□ 1.24
VPS29-207ENST00000549970 MARCH10Q8NA82 808 aaPredicted RBP22.82■■□□□ 1.24
VPS29-207ENST00000549970 SBF2Q86WG5 1849 aa22.82■■□□□ 1.24
VPS29-207ENST00000549970 EXOC5O00471 708 aa22.81■■□□□ 1.24
VPS29-207ENST00000549970 RREB1Q92766 1687 aa22.81■■□□□ 1.24
VPS29-207ENST00000549970 CCER1Q8TC90 406 aaPredicted RBP22.8■■□□□ 1.24
VPS29-207ENST00000549970 FBLN1P23142 703 aa22.79■■□□□ 1.24
VPS29-207ENST00000549970 IP6K1Q92551 441 aa22.79■■□□□ 1.24
VPS29-207ENST00000549970 TNS2Q63HR2 1409 aa22.78■■□□□ 1.24
VPS29-207ENST00000549970 LTV1Q96GA3 475 aaPredicted RBP22.78■■□□□ 1.24
VPS29-207ENST00000549970 MAP3K19Q56UN5 1328 aa22.78■■□□□ 1.24
VPS29-207ENST00000549970 NUP188Q5SRE5 1749 aa22.77■■□□□ 1.24
VPS29-207ENST00000549970 GGNBP2Q9H3C7 697 aa22.77■■□□□ 1.24
VPS29-207ENST00000549970 FYB1O15117 783 aa22.76■■□□□ 1.23
VPS29-207ENST00000549970 IL2RBP14784 551 aa22.76■■□□□ 1.23
VPS29-207ENST00000549970 PTF1AQ7RTS3 328 aa22.76■■□□□ 1.23
VPS29-207ENST00000549970 BCL11BQ9C0K0 894 aaPredicted RBP22.76■■□□□ 1.23
VPS29-207ENST00000549970 LRP5O75197 1615 aa22.75■■□□□ 1.23
VPS29-207ENST00000549970 BCL9O00512 1426 aa22.75■■□□□ 1.23
VPS29-207ENST00000549970 MYOM1P52179 1685 aa22.75■■□□□ 1.23
VPS29-207ENST00000549970 AMPHP49418 695 aa22.75■■□□□ 1.23
VPS29-207ENST00000549970 HOXC9P31274 260 aa22.74■■□□□ 1.23
VPS29-207ENST00000549970 KIF20BQ96Q89 1820 aa22.73■■□□□ 1.23
VPS29-207ENST00000549970 FAM208AQ9UK61 1670 aaKnown RBP22.72■■□□□ 1.23
VPS29-207ENST00000549970 RRS1Q15050 365 aaKnown RBP22.72■■□□□ 1.23
VPS29-207ENST00000549970 NBPF14Q5TI25 921 aa22.72■■□□□ 1.23
VPS29-207ENST00000549970 RGPD3A6NKT7 1758 aaPredicted RBP22.71■■□□□ 1.23
VPS29-207ENST00000549970 RGPD4Q7Z3J3 1758 aa22.71■■□□□ 1.23
VPS29-207ENST00000549970 PLSCR1O15162 318 aa22.71■■□□□ 1.23
VPS29-207ENST00000549970 POLR3GLQ9BT43 218 aa22.7■■□□□ 1.22
VPS29-207ENST00000549970 NSD3Q9BZ95 1437 aa22.7■■□□□ 1.22
VPS29-207ENST00000549970 CARD14Q9BXL6 1004 aa22.69■■□□□ 1.22
VPS29-207ENST00000549970 RTL1A6NKG5 1358 aa22.68■■□□□ 1.22
VPS29-207ENST00000549970 ACSBG1Q96GR2 724 aa22.68■■□□□ 1.22
VPS29-207ENST00000549970 RGPD2P0DJD1 1756 aa22.68■■□□□ 1.22
VPS29-207ENST00000549970 KCNQ2O43526 872 aa22.67■■□□□ 1.22
VPS29-207ENST00000549970 NHSQ6T4R5 1651 aa22.66■■□□□ 1.22
VPS29-207ENST00000549970 EIF4G2P78344 907 aaKnown RBP eCLIP22.66■■□□□ 1.22
VPS29-207ENST00000549970 HSPA5P11021 654 aaKnown RBP22.65■■□□□ 1.22
VPS29-207ENST00000549970 KAT6BQ8WYB5 2073 aa22.65■■□□□ 1.22
VPS29-207ENST00000549970 PROM2Q8N271 834 aa22.63■■□□□ 1.21
VPS29-207ENST00000549970 DDX54Q8TDD1 881 aaKnown RBP22.63■■□□□ 1.21
VPS29-207ENST00000549970 ANO8Q9HCE9 1232 aaPredicted RBP22.62■■□□□ 1.21
VPS29-207ENST00000549970 SMG6Q86US8 1419 aaKnown RBP22.62■■□□□ 1.21
VPS29-207ENST00000549970 TXNRD1Q16881 649 aa22.61■■□□□ 1.21
VPS29-207ENST00000549970 HSP90AB2PQ58FF8 381 aa22.61■■□□□ 1.21
VPS29-207ENST00000549970 NBPF6Q5VWK0 638 aa22.61■■□□□ 1.21
VPS29-207ENST00000549970 NBPF4Q96M43 638 aa22.61■■□□□ 1.21
VPS29-207ENST00000549970 FLT4P35916 1363 aa22.61■■□□□ 1.21
VPS29-207ENST00000549970 USHBP1Q8N6Y0 703 aa22.6■■□□□ 1.21
VPS29-207ENST00000549970 MEGF6O75095 1541 aa22.6■■□□□ 1.21
VPS29-207ENST00000549970 CGNL1Q0VF96 1302 aa22.59■■□□□ 1.21
VPS29-207ENST00000549970 EMILIN1Q9Y6C2 1016 aa22.59■■□□□ 1.21
VPS29-207ENST00000549970 INSRP06213 1382 aa22.59■■□□□ 1.21
VPS29-207ENST00000549970 BTAF1O14981 1849 aa22.58■■□□□ 1.21
VPS29-207ENST00000549970 ZCRB1Q8TBF4 217 aaKnown RBP22.57■■□□□ 1.2
VPS29-207ENST00000549970 KIF24Q5T7B8 1368 aa22.57■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms