RNA–Protein interactions for RNA: ENST00000549341.1

DEPDC4-208, Transcript of DEP domain containing 4, humanhuman

TSL 1 (best)

Gene DEPDC4, Length 541 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4-208ENST00000549341 POTEB3A0JP26 581 aa10.36□□□□□ -0.75
DEPDC4-208ENST00000549341 VASPP50552 380 aaPredicted RBP10.36□□□□□ -0.75
DEPDC4-208ENST00000549341 EZH2Q15910 746 aaKnown RBP10.36□□□□□ -0.75
DEPDC4-208ENST00000549341 POTEBQ6S5H4 581 aa10.36□□□□□ -0.75
DEPDC4-208ENST00000549341 KRT28Q7Z3Y7 464 aa10.36□□□□□ -0.75
DEPDC4-208ENST00000549341 WAPLQ7Z5K2 1190 aa10.36□□□□□ -0.75
DEPDC4-208ENST00000549341 PLEKHH1Q9ULM0 1364 aa10.36□□□□□ -0.75
DEPDC4-208ENST00000549341 BRWD3Q6RI45 1802 aa10.35□□□□□ -0.75
DEPDC4-208ENST00000549341 PPP1R1BQ9UD71 204 aaPredicted RBP10.35□□□□□ -0.75
DEPDC4-208ENST00000549341 ONECUT3O60422 494 aaPredicted RBP10.34□□□□□ -0.75
DEPDC4-208ENST00000549341 BOLA1Q9Y3E2 137 aa10.34□□□□□ -0.75
DEPDC4-208ENST00000549341 PLCH1Q4KWH8 1693 aa10.34□□□□□ -0.75
DEPDC4-208ENST00000549341 BTG4Q9NY30 223 aa10.33□□□□□ -0.76
DEPDC4-208ENST00000549341 ARHGEF10O15013 1369 aa10.33□□□□□ -0.76
DEPDC4-208ENST00000549341 ADGRB2O60241 1585 aa10.33□□□□□ -0.76
DEPDC4-208ENST00000549341 DISP2A7MBM2 1401 aa10.33□□□□□ -0.76
DEPDC4-208ENST00000549341 FAM83GA6ND36 823 aa10.32□□□□□ -0.76
DEPDC4-208ENST00000549341 TRIM37O94972 964 aa10.32□□□□□ -0.76
DEPDC4-208ENST00000549341 PSME1Q06323 249 aa10.32□□□□□ -0.76
DEPDC4-208ENST00000549341 ZNF710Q8N1W2 664 aa10.32□□□□□ -0.76
DEPDC4-208ENST00000549341 PHF8Q9UPP1 1060 aa10.32□□□□□ -0.76
DEPDC4-208ENST00000549341 CLSPNQ9HAW4 1339 aa10.32□□□□□ -0.76
DEPDC4-208ENST00000549341 KIF1AQ12756 1690 aa10.31□□□□□ -0.76
DEPDC4-208ENST00000549341 SENP3-EIF4A1A0A087X0R7 540 aa10.3□□□□□ -0.76
DEPDC4-208ENST00000549341 APBA3O96018 575 aa10.3□□□□□ -0.76
DEPDC4-208ENST00000549341 HOXB1P14653 301 aaPredicted RBP10.3□□□□□ -0.76
DEPDC4-208ENST00000549341 DOK7Q18PE1 504 aa10.3□□□□□ -0.76
DEPDC4-208ENST00000549341 TMEM132EQ6IEE7 984 aa10.3□□□□□ -0.76
DEPDC4-208ENST00000549341 TECPR2O15040 1411 aa10.3□□□□□ -0.76
DEPDC4-208ENST00000549341 UTRNP46939 3433 aa10.3□□□□□ -0.76
DEPDC4-208ENST00000549341 RPGRIP1LQ68CZ1 1315 aa10.3□□□□□ -0.76
DEPDC4-208ENST00000549341 ADGRF5Q8IZF2 1346 aa10.3□□□□□ -0.76
DEPDC4-208ENST00000549341 RGPD1P0DJD0 1748 aa10.3□□□□□ -0.76
DEPDC4-208ENST00000549341 SBNO1A3KN83 1393 aa10.29□□□□□ -0.76
DEPDC4-208ENST00000549341 HOXB3P14651 431 aaPredicted RBP10.29□□□□□ -0.76
DEPDC4-208ENST00000549341 DPY19L2Q6NUT2 758 aa10.29□□□□□ -0.76
DEPDC4-208ENST00000549341 CAMKK2Q96RR4 588 aa10.29□□□□□ -0.76
DEPDC4-208ENST00000549341 CABP2Q9NPB3 220 aa10.29□□□□□ -0.76
DEPDC4-208ENST00000549341 NWD2Q9ULI1 1742 aa10.29□□□□□ -0.76
DEPDC4-208ENST00000549341 SPATA31A5Q5VU36 1347 aa10.29□□□□□ -0.76
DEPDC4-208ENST00000549341 SPATA31A7Q8IWB4 1347 aa10.29□□□□□ -0.76
DEPDC4-208ENST00000549341 SAFB2Q14151 953 aaKnown RBP eCLIP10.28□□□□□ -0.76
DEPDC4-208ENST00000549341 PMFBP1Q8TBY8 1022 aa10.28□□□□□ -0.76
DEPDC4-208ENST00000549341 NINLQ9Y2I6 1382 aa10.27□□□□□ -0.76
DEPDC4-208ENST00000549341 RIMBP2O15034 1052 aa10.27□□□□□ -0.77
DEPDC4-208ENST00000549341 NBPF8Q3BBV2 869 aa10.27□□□□□ -0.77
DEPDC4-208ENST00000549341 NBPF14Q5TI25 921 aa10.27□□□□□ -0.77
DEPDC4-208ENST00000549341 SPON1Q9HCB6 807 aa10.27□□□□□ -0.77
DEPDC4-208ENST00000549341 PRDM11Q9NQV5 511 aa10.27□□□□□ -0.77
DEPDC4-208ENST00000549341 NRXN1Q9ULB1 1477 aa10.27□□□□□ -0.77
DEPDC4-208ENST00000549341 ERBB3P21860 1342 aa10.27□□□□□ -0.77
DEPDC4-208ENST00000549341 ABCA3Q99758 1704 aa10.27□□□□□ -0.77
DEPDC4-208ENST00000549341 TNS1Q9HBL0 1735 aaKnown RBP10.27□□□□□ -0.77
DEPDC4-208ENST00000549341 FMN2Q9NZ56 1722 aa10.27□□□□□ -0.77
DEPDC4-208ENST00000549341 PARD3Q8TEW0 1356 aa10.26□□□□□ -0.77
DEPDC4-208ENST00000549341 RAB3GAP2Q9H2M9 1393 aa10.26□□□□□ -0.77
DEPDC4-208ENST00000549341 RGL3Q3MIN7 710 aa10.26□□□□□ -0.77
DEPDC4-208ENST00000549341 FAM196AQ6ZSG2 479 aa10.26□□□□□ -0.77
DEPDC4-208ENST00000549341 STRN4Q9NRL3 753 aa10.26□□□□□ -0.77
DEPDC4-208ENST00000549341 USP35Q9P2H5 1018 aa10.26□□□□□ -0.77
DEPDC4-208ENST00000549341 NRAPQ86VF7 1730 aa10.26□□□□□ -0.77
DEPDC4-208ENST00000549341 KIF1BO60333 1816 aa10.26□□□□□ -0.77
DEPDC4-208ENST00000549341 ABCC11Q96J66 1382 aa10.26□□□□□ -0.77
DEPDC4-208ENST00000549341 YTHDC2Q9H6S0 1430 aaKnown RBP10.25□□□□□ -0.77
DEPDC4-208ENST00000549341 ZNF784Q8NCA9 323 aaPredicted RBP10.25□□□□□ -0.77
DEPDC4-208ENST00000549341 THSD7AQ9UPZ6 1657 aa10.25□□□□□ -0.77
DEPDC4-208ENST00000549341 KCNQ2O43526 872 aa10.23□□□□□ -0.77
DEPDC4-208ENST00000549341 CHRNA2Q15822 529 aa10.23□□□□□ -0.77
DEPDC4-208ENST00000549341 SPATA31A1Q5TZJ5 1347 aa10.23□□□□□ -0.77
DEPDC4-208ENST00000549341 GPRASP1Q5JY77 1395 aa10.23□□□□□ -0.77
DEPDC4-208ENST00000549341 PIK3C2GO75747 1445 aa10.23□□□□□ -0.77
DEPDC4-208ENST00000549341 PPLO60437 1756 aa10.22□□□□□ -0.77
DEPDC4-208ENST00000549341 COL14A1Q05707 1796 aaKnown RBP10.22□□□□□ -0.77
DEPDC4-208ENST00000549341 PDE3BQ13370 1112 aa10.22□□□□□ -0.77
DEPDC4-208ENST00000549341 IFFO2Q5TF58 517 aa10.22□□□□□ -0.77
DEPDC4-208ENST00000549341 SPOCK2Q92563 424 aa10.22□□□□□ -0.77
DEPDC4-208ENST00000549341 PRAM1Q96QH2 718 aa10.22□□□□□ -0.77
DEPDC4-208ENST00000549341 CIZ1Q9ULV3 898 aaPredicted RBP10.22□□□□□ -0.77
DEPDC4-208ENST00000549341 KIAA0232Q92628 1395 aa10.22□□□□□ -0.77
DEPDC4-208ENST00000549341 CEP350Q5VT06 3117 aa10.21□□□□□ -0.77
DEPDC4-208ENST00000549341 RNF166Q96A37 237 aaPredicted RBP10.21□□□□□ -0.77
DEPDC4-208ENST00000549341 HIRIP3Q9BW71 556 aaPredicted RBP10.21□□□□□ -0.77
DEPDC4-208ENST00000549341 DHX57Q6P158 1386 aaKnown RBP10.21□□□□□ -0.78
DEPDC4-208ENST00000549341 ANKRD30BQ9BXX2 1392 aa10.21□□□□□ -0.78
DEPDC4-208ENST00000549341 ZBTB7AO95365 584 aa10.2□□□□□ -0.78
DEPDC4-208ENST00000549341 KNDC1Q76NI1 1749 aa10.2□□□□□ -0.78
DEPDC4-208ENST00000549341 ANKARQ7Z5J8 1434 aa10.2□□□□□ -0.78
DEPDC4-208ENST00000549341 POGKQ9P215 609 aa10.2□□□□□ -0.78
DEPDC4-208ENST00000549341 CAMTA1Q9Y6Y1 1673 aa10.2□□□□□ -0.78
DEPDC4-208ENST00000549341 NUP188Q5SRE5 1749 aa10.19□□□□□ -0.78
DEPDC4-208ENST00000549341 IFT172Q9UG01 1749 aa10.19□□□□□ -0.78
DEPDC4-208ENST00000549341 NRKQ7Z2Y5 1582 aa10.19□□□□□ -0.78
DEPDC4-208ENST00000549341 C1QTNF8P60827 252 aa10.19□□□□□ -0.78
DEPDC4-208ENST00000549341 ANO8Q9HCE9 1232 aaPredicted RBP10.19□□□□□ -0.78
DEPDC4-208ENST00000549341 ZSWIM6Q9HCJ5 1215 aa10.19□□□□□ -0.78
DEPDC4-208ENST00000549341 SPATA31E1Q6ZUB1 1445 aa10.18□□□□□ -0.78
DEPDC4-208ENST00000549341 ZC3H6P61129 1189 aaKnown RBP10.18□□□□□ -0.78
DEPDC4-208ENST00000549341 NUTM2GQ5VZR2 741 aa10.18□□□□□ -0.78
DEPDC4-208ENST00000549341 NGDNQ8NEJ9 315 aaKnown RBP10.18□□□□□ -0.78
DEPDC4-208ENST00000549341 RREB1Q92766 1687 aa10.18□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms