RNA–Protein interactions for RNA: ENST00000546588.1

VPS29-203, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 1,059 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-203ENST00000546588 RBM26Q5T8P6 1007 aaKnown RBP12.02□□□□□ -0.49
VPS29-203ENST00000546588 NBPF3Q9H094 633 aa12.02□□□□□ -0.49
VPS29-203ENST00000546588 ARIH1Q9Y4X5 557 aaPredicted RBP12.01□□□□□ -0.49
VPS29-203ENST00000546588 RIMS1Q86UR5 1692 aaKnown RBP12□□□□□ -0.49
VPS29-203ENST00000546588 MLLT3P42568 568 aaPredicted RBP12□□□□□ -0.49
VPS29-203ENST00000546588 KRI1Q8N9T8 703 aaKnown RBP12□□□□□ -0.49
VPS29-203ENST00000546588 SLC52A1Q9NWF4 448 aa12□□□□□ -0.49
VPS29-203ENST00000546588 RABGEF1Q9UJ41 708 aa12□□□□□ -0.49
VPS29-203ENST00000546588 NLRP1Q9C000 1473 aa12□□□□□ -0.49
VPS29-203ENST00000546588 GOLGA8CPA6NN73 597 aa11.99□□□□□ -0.49
VPS29-203ENST00000546588 BARGINQ6ZT62 677 aa11.99□□□□□ -0.49
VPS29-203ENST00000546588 GPIHBP1Q8IV16 184 aa11.99□□□□□ -0.49
VPS29-203ENST00000546588 PIK3C2GO75747 1445 aa11.99□□□□□ -0.49
VPS29-203ENST00000546588 ZMYM3Q14202 1370 aa11.98□□□□□ -0.49
VPS29-203ENST00000546588 A0A0G2JS52 829 aa11.98□□□□□ -0.49
VPS29-203ENST00000546588 COL9A1P20849 921 aa11.98□□□□□ -0.49
VPS29-203ENST00000546588 NBPF8Q3BBV2 869 aa11.98□□□□□ -0.49
VPS29-203ENST00000546588 NRXN3Q9Y4C0 1643 aa11.97□□□□□ -0.49
VPS29-203ENST00000546588 ADGRB1O14514 1584 aa11.97□□□□□ -0.49
VPS29-203ENST00000546588 A2ML1A8K2U0 1454 aa11.97□□□□□ -0.49
VPS29-203ENST00000546588 RPGRIP1LQ68CZ1 1315 aa11.97□□□□□ -0.49
VPS29-203ENST00000546588 PHF14O94880 888 aa11.97□□□□□ -0.49
VPS29-203ENST00000546588 SETD1BQ9UPS6 1966 aaKnown RBP11.97□□□□□ -0.49
VPS29-203ENST00000546588 PROX2Q3B8N5 592 aa11.96□□□□□ -0.49
VPS29-203ENST00000546588 FBXW7Q969H0 707 aa11.96□□□□□ -0.49
VPS29-203ENST00000546588 KNDC1Q76NI1 1749 aa11.95□□□□□ -0.5
VPS29-203ENST00000546588 ARHGEF28Q8N1W1 1705 aaKnown RBP11.95□□□□□ -0.5
VPS29-203ENST00000546588 TYW1BQ6NUM6 668 aa11.95□□□□□ -0.5
VPS29-203ENST00000546588 SLIT1O75093 1534 aa11.95□□□□□ -0.5
VPS29-203ENST00000546588 DPYSL4O14531 572 aa11.94□□□□□ -0.5
VPS29-203ENST00000546588 AK7Q96M32 723 aa11.94□□□□□ -0.5
VPS29-203ENST00000546588 ARHGAP23Q9P227 1491 aa11.93□□□□□ -0.5
VPS29-203ENST00000546588 ONECUT3O60422 494 aaPredicted RBP11.92□□□□□ -0.5
VPS29-203ENST00000546588 ITGBL1O95965 494 aaPredicted RBP11.92□□□□□ -0.5
VPS29-203ENST00000546588 LAPTM4BQ86VI4 370 aa11.92□□□□□ -0.5
VPS29-203ENST00000546588 GPBP1L1Q9HC44 474 aaPredicted RBP11.92□□□□□ -0.5
VPS29-203ENST00000546588 CEP170BQ9Y4F5 1589 aaPredicted RBP11.92□□□□□ -0.5
VPS29-203ENST00000546588 ASXL1Q8IXJ9 1541 aa11.91□□□□□ -0.5
VPS29-203ENST00000546588 DCAF11Q8TEB1 546 aa11.91□□□□□ -0.5
VPS29-203ENST00000546588 TNRQ92752 1358 aa11.91□□□□□ -0.5
VPS29-203ENST00000546588 IDI1Q13907 227 aa11.9□□□□□ -0.5
VPS29-203ENST00000546588 SCAF11Q99590 1463 aaKnown RBP11.89□□□□□ -0.51
VPS29-203ENST00000546588 DIP2AQ14689 1571 aa11.89□□□□□ -0.51
VPS29-203ENST00000546588 ANKK1Q8NFD2 765 aa11.89□□□□□ -0.51
VPS29-203ENST00000546588 USP47Q96K76 1375 aa11.89□□□□□ -0.51
VPS29-203ENST00000546588 SBNO2Q9Y2G9 1366 aa11.89□□□□□ -0.51
VPS29-203ENST00000546588 QRICH2Q9H0J4 1663 aa11.88□□□□□ -0.51
VPS29-203ENST00000546588 SOWAHBA6NEL2 793 aa11.88□□□□□ -0.51
VPS29-203ENST00000546588 EPAS1Q99814 870 aa11.88□□□□□ -0.51
VPS29-203ENST00000546588 ALKQ9UM73 1620 aa11.88□□□□□ -0.51
VPS29-203ENST00000546588 ROCK2O75116 1388 aaKnown RBP11.88□□□□□ -0.51
VPS29-203ENST00000546588 ARID4BQ4LE39 1312 aaPredicted RBP11.87□□□□□ -0.51
VPS29-203ENST00000546588 DLC1Q96QB1 1528 aa11.87□□□□□ -0.51
VPS29-203ENST00000546588 EIF5BO60841 1220 aaKnown RBP11.87□□□□□ -0.51
VPS29-203ENST00000546588 EIF4G2P78344 907 aaKnown RBP eCLIP11.87□□□□□ -0.51
VPS29-203ENST00000546588 C6orf132Q5T0Z8 1188 aa11.87□□□□□ -0.51
VPS29-203ENST00000546588 FBXO31Q5XUX0 539 aaPredicted RBP11.87□□□□□ -0.51
VPS29-203ENST00000546588 IL27Q8NEV9 243 aa11.87□□□□□ -0.51
VPS29-203ENST00000546588 MYOM1P52179 1685 aa11.87□□□□□ -0.51
VPS29-203ENST00000546588 KIAA1468Q9P260 1216 aa11.86□□□□□ -0.51
VPS29-203ENST00000546588 MED14O60244 1454 aa11.85□□□□□ -0.51
VPS29-203ENST00000546588 SPDYE16A6NNV3 312 aaPredicted RBP11.85□□□□□ -0.51
VPS29-203ENST00000546588 BCAMP50895 628 aa11.85□□□□□ -0.51
VPS29-203ENST00000546588 ZFRQ96KR1 1074 aaKnown RBP11.85□□□□□ -0.51
VPS29-203ENST00000546588 PTPRMP28827 1452 aa11.84□□□□□ -0.51
VPS29-203ENST00000546588 RGL3Q3MIN7 710 aa11.84□□□□□ -0.51
VPS29-203ENST00000546588 ESF1Q9H501 851 aaKnown RBP11.84□□□□□ -0.51
VPS29-203ENST00000546588 CPS1P31327 1500 aa11.84□□□□□ -0.51
VPS29-203ENST00000546588 RIMS2Q9UQ26 1411 aa11.84□□□□□ -0.51
VPS29-203ENST00000546588 ADGRF5Q8IZF2 1346 aa11.84□□□□□ -0.51
VPS29-203ENST00000546588 TMEM2Q9UHN6 1383 aa11.83□□□□□ -0.52
VPS29-203ENST00000546588 HSPA5P11021 654 aaKnown RBP11.83□□□□□ -0.52
VPS29-203ENST00000546588 PDIA6Q15084 440 aa11.83□□□□□ -0.52
VPS29-203ENST00000546588 NYAP1Q6ZVC0 841 aa11.83□□□□□ -0.52
VPS29-203ENST00000546588 HOMEZQ8IX15 550 aa11.83□□□□□ -0.52
VPS29-203ENST00000546588 IRX2Q9BZI1 471 aaPredicted RBP11.83□□□□□ -0.52
VPS29-203ENST00000546588 KDM4CQ9H3R0 1056 aa11.83□□□□□ -0.52
VPS29-203ENST00000546588 C14orf93Q9H972 538 aaKnown RBP11.83□□□□□ -0.52
VPS29-203ENST00000546588 MLECQ14165 292 aa11.82□□□□□ -0.52
VPS29-203ENST00000546588 TECPR2O15040 1411 aa11.82□□□□□ -0.52
VPS29-203ENST00000546588 XRN1Q8IZH2 1706 aaKnown RBP11.82□□□□□ -0.52
VPS29-203ENST00000546588 EIF3AQ14152 1382 aaKnown RBP11.81□□□□□ -0.52
VPS29-203ENST00000546588 TRIM6-TRIM34B2RNG4 842 aa11.81□□□□□ -0.52
VPS29-203ENST00000546588 TRIM66O15016 1216 aa11.81□□□□□ -0.52
VPS29-203ENST00000546588 CCDC7Q96M83 1385 aa11.8□□□□□ -0.52
VPS29-203ENST00000546588 GRXCR2A6NFK2 248 aa11.8□□□□□ -0.52
VPS29-203ENST00000546588 PDE4DQ08499 809 aa11.8□□□□□ -0.52
VPS29-203ENST00000546588 NBPF1Q3BBV0 1214 aa11.8□□□□□ -0.52
VPS29-203ENST00000546588 CARD11Q9BXL7 1154 aa11.8□□□□□ -0.52
VPS29-203ENST00000546588 PLEKHG1Q9ULL1 1385 aa11.79□□□□□ -0.52
VPS29-203ENST00000546588 ADGRB2O60241 1585 aa11.79□□□□□ -0.52
VPS29-203ENST00000546588 WBP1LQ9NX94 342 aa11.79□□□□□ -0.52
VPS29-203ENST00000546588 WASHC2AQ641Q2 1341 aa11.79□□□□□ -0.52
VPS29-203ENST00000546588 CHD2O14647 1828 aaKnown RBP11.79□□□□□ -0.52
VPS29-203ENST00000546588 ADAMTS13Q76LX8 1427 aa11.78□□□□□ -0.52
VPS29-203ENST00000546588 NUTM2FA1L443 756 aa11.78□□□□□ -0.52
VPS29-203ENST00000546588 ABCF1Q8NE71 845 aaKnown RBP eCLIP11.78□□□□□ -0.52
VPS29-203ENST00000546588 TESK2Q96S53 571 aa11.78□□□□□ -0.52
VPS29-203ENST00000546588 SEPT9Q9UHD8 586 aaPredicted RBP11.78□□□□□ -0.52
VPS29-203ENST00000546588 FAM98CQ17RN3 349 aaKnown RBP11.77□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms