RNA–Protein interactions for RNA: ENST00000543185.5

HDAC4-215, Transcript of histone deacetylase 4, humanhuman

TSL 5 BASIC

Gene HDAC4, Length 8,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-215ENST00000543185 FMNL2Q96PY5 1086 aa22.77■■□□□ 1.24
HDAC4-215ENST00000543185 ANKRD62A6NC57 917 aa22.77■■□□□ 1.24
HDAC4-215ENST00000543185 DYNC1I1O14576 645 aa22.77■■□□□ 1.24
HDAC4-215ENST00000543185 GOLGA6L9A6NEM1 432 aa22.76■■□□□ 1.23
HDAC4-215ENST00000543185 BACH2Q9BYV9 841 aa22.76■■□□□ 1.23
HDAC4-215ENST00000543185 GCOM1H8Y6P7 765 aaPredicted RBP22.76■■□□□ 1.23
HDAC4-215ENST00000543185 KRT18P05783 430 aaKnown RBP22.76■■□□□ 1.23
HDAC4-215ENST00000543185 MYZAPP0CAP1 466 aa22.76■■□□□ 1.23
HDAC4-215ENST00000543185 BRPF1P55201 1214 aaPredicted RBP22.76■■□□□ 1.23
HDAC4-215ENST00000543185 NUP62CLQ9H1M0 184 aa22.76■■□□□ 1.23
HDAC4-215ENST00000543185 MAP2K1Q02750 393 aaPredicted RBP22.76■■□□□ 1.23
HDAC4-215ENST00000543185 KIF5CO60282 957 aa22.76■■□□□ 1.23
HDAC4-215ENST00000543185 UPF3BQ9BZI7 483 aaKnown RBP22.76■■□□□ 1.23
HDAC4-215ENST00000543185 PTPN14Q15678 1187 aa22.75■■□□□ 1.23
HDAC4-215ENST00000543185 MAP3K11Q16584 847 aa22.75■■□□□ 1.23
HDAC4-215ENST00000543185 WASHC4Q2M389 1173 aa22.75■■□□□ 1.23
HDAC4-215ENST00000543185 KIAA1328Q86T90 577 aa22.75■■□□□ 1.23
HDAC4-215ENST00000543185 KRT32Q14532 448 aa22.75■■□□□ 1.23
HDAC4-215ENST00000543185 ELL2O00472 640 aaPredicted RBP22.75■■□□□ 1.23
HDAC4-215ENST00000543185 ZSCAN31Q96LW9 406 aaPredicted RBP22.75■■□□□ 1.23
HDAC4-215ENST00000543185 LTV1Q96GA3 475 aaPredicted RBP22.74■■□□□ 1.23
HDAC4-215ENST00000543185 SPATA32Q96LK8 384 aa22.74■■□□□ 1.23
HDAC4-215ENST00000543185 CETN2P41208 172 aa22.74■■□□□ 1.23
HDAC4-215ENST00000543185 CCDC30Q5VVM6 783 aa22.74■■□□□ 1.23
HDAC4-215ENST00000543185 WASF1Q92558 559 aa22.74■■□□□ 1.23
HDAC4-215ENST00000543185 PPP6R1Q9UPN7 881 aa22.74■■□□□ 1.23
HDAC4-215ENST00000543185 TAF4BQ92750 862 aa22.73■■□□□ 1.23
HDAC4-215ENST00000543185 TSPYL4Q9UJ04 414 aa22.73■■□□□ 1.23
HDAC4-215ENST00000543185 PPP1R12BO60237 982 aaPredicted RBP22.73■■□□□ 1.23
HDAC4-215ENST00000543185 SMC1AQ14683 1233 aaKnown RBP22.73■■□□□ 1.23
HDAC4-215ENST00000543185 VPS36Q86VN1 386 aa22.73■■□□□ 1.23
HDAC4-215ENST00000543185 PANK1Q8TE04 598 aa22.73■■□□□ 1.23
HDAC4-215ENST00000543185 EIF2S2P20042 333 aaKnown RBP22.73■■□□□ 1.23
HDAC4-215ENST00000543185 GIGYF2Q6Y7W6 1299 aaKnown RBP22.73■■□□□ 1.23
HDAC4-215ENST00000543185 CEP131Q9UPN4 1083 aa22.72■■□□□ 1.23
HDAC4-215ENST00000543185 FOSBP53539 338 aa22.72■■□□□ 1.23
HDAC4-215ENST00000543185 NOL7Q9UMY1 257 aaKnown RBP22.72■■□□□ 1.23
HDAC4-215ENST00000543185 SKIDA1Q1XH10 827 aa22.72■■□□□ 1.23
HDAC4-215ENST00000543185 ERICH3Q5RHP9 1530 aa22.72■■□□□ 1.23
HDAC4-215ENST00000543185 TRAK1Q9UPV9 953 aa22.72■■□□□ 1.23
HDAC4-215ENST00000543185 DNAI2Q9GZS0 605 aa22.72■■□□□ 1.23
HDAC4-215ENST00000543185 PRKCSHP14314 528 aaPredicted RBP22.71■■□□□ 1.23
HDAC4-215ENST00000543185 CCT4P50991 539 aaKnown RBP22.71■■□□□ 1.23
HDAC4-215ENST00000543185 GNAI2P04899 355 aa22.71■■□□□ 1.23
HDAC4-215ENST00000543185 IVLP07476 585 aa22.71■■□□□ 1.23
HDAC4-215ENST00000543185 FGD6Q6ZV73 1430 aa22.71■■□□□ 1.23
HDAC4-215ENST00000543185 GSDMDP57764 484 aa22.71■■□□□ 1.23
HDAC4-215ENST00000543185 FAM193AP78312 1265 aa22.7■■□□□ 1.22
HDAC4-215ENST00000543185 SPECC1LQ69YQ0 1117 aa22.7■■□□□ 1.22
HDAC4-215ENST00000543185 CASQ1P31415 396 aa22.7■■□□□ 1.22
HDAC4-215ENST00000543185 ZNF428Q96B54 188 aa22.7■■□□□ 1.22
HDAC4-215ENST00000543185 HECW1Q76N89 1606 aa22.7■■□□□ 1.22
HDAC4-215ENST00000543185 POTEJP0CG39 1038 aa22.7■■□□□ 1.22
HDAC4-215ENST00000543185 NACAP1Q9BZK3 213 aa22.7■■□□□ 1.22
HDAC4-215ENST00000543185 MCM4P33991 863 aa22.69■■□□□ 1.22
HDAC4-215ENST00000543185 CCDC183Q5T5S1 534 aa22.69■■□□□ 1.22
HDAC4-215ENST00000543185 DNAJC2Q99543 621 aaKnown RBP22.69■■□□□ 1.22
HDAC4-215ENST00000543185 TAOK3Q9H2K8 898 aa22.69■■□□□ 1.22
HDAC4-215ENST00000543185 CTAGE5O15320 804 aa22.69■■□□□ 1.22
HDAC4-215ENST00000543185 BMP2KQ9NSY1 1161 aaPredicted RBP22.69■■□□□ 1.22
HDAC4-215ENST00000543185 GNL3LQ9NVN8 582 aaKnown RBP22.69■■□□□ 1.22
HDAC4-215ENST00000543185 CECR2Q9BXF3 1484 aa22.69■■□□□ 1.22
HDAC4-215ENST00000543185 PRIMPOLQ96LW4 560 aa22.68■■□□□ 1.22
HDAC4-215ENST00000543185 LARP1BQ659C4 914 aaKnown RBP22.68■■□□□ 1.22
HDAC4-215ENST00000543185 TIGD1Q96MW7 591 aa22.68■■□□□ 1.22
HDAC4-215ENST00000543185 TUBB4BP68371 445 aa22.68■■□□□ 1.22
HDAC4-215ENST00000543185 DDX12PQ92771 950 aa22.68■■□□□ 1.22
HDAC4-215ENST00000543185 PAXBP1Q9Y5B6 917 aa22.68■■□□□ 1.22
HDAC4-215ENST00000543185 SPA17Q15506 151 aa22.67■■□□□ 1.22
HDAC4-215ENST00000543185 CEP63Q96MT8 703 aa22.67■■□□□ 1.22
HDAC4-215ENST00000543185 ZSCAN25Q6NSZ9 544 aa22.67■■□□□ 1.22
HDAC4-215ENST00000543185 CCDC57Q2TAC2 916 aa22.66■■□□□ 1.22
HDAC4-215ENST00000543185 CCDC175P0C221 793 aa22.66■■□□□ 1.22
HDAC4-215ENST00000543185 NEUROD6Q96NK8 337 aa22.66■■□□□ 1.22
HDAC4-215ENST00000543185 NAA15Q9BXJ9 866 aaKnown RBP22.66■■□□□ 1.22
HDAC4-215ENST00000543185 EHBP1Q8NDI1 1231 aa22.66■■□□□ 1.22
HDAC4-215ENST00000543185 SCAND2PQ9GZW5 306 aaPredicted RBP22.66■■□□□ 1.22
HDAC4-215ENST00000543185 RIC3Q7Z5B4 369 aa22.66■■□□□ 1.22
HDAC4-215ENST00000543185 CFAP57Q96MR6 1250 aa22.66■■□□□ 1.22
HDAC4-215ENST00000543185 ANKRD18BA2A2Z9 1011 aa22.65■■□□□ 1.22
HDAC4-215ENST00000543185 FGFR1OPO95684 399 aaKnown RBP22.65■■□□□ 1.22
HDAC4-215ENST00000543185 BCL11BQ9C0K0 894 aaPredicted RBP22.65■■□□□ 1.22
HDAC4-215ENST00000543185 BBXQ8WY36 941 aaPredicted RBP22.64■■□□□ 1.22
HDAC4-215ENST00000543185 EHBP1L1Q8N3D4 1523 aa22.64■■□□□ 1.22
HDAC4-215ENST00000543185 CTR9Q6PD62 1173 aa22.64■■□□□ 1.21
HDAC4-215ENST00000543185 DHX29Q7Z478 1369 aaKnown RBP22.64■■□□□ 1.21
HDAC4-215ENST00000543185 EVA1CP58658 441 aa22.63■■□□□ 1.21
HDAC4-215ENST00000543185 CTNNA3Q9UI47 895 aa22.63■■□□□ 1.21
HDAC4-215ENST00000543185 EFCAB5A4FU69 1503 aa22.63■■□□□ 1.21
HDAC4-215ENST00000543185 PAF1Q8N7H5 531 aa22.62■■□□□ 1.21
HDAC4-215ENST00000543185 C6orf163Q5TEZ5 329 aa22.62■■□□□ 1.21
HDAC4-215ENST00000543185 TANGO6Q9C0B7 1094 aa22.62■■□□□ 1.21
HDAC4-215ENST00000543185 CFAP100Q494V2 611 aa22.62■■□□□ 1.21
HDAC4-215ENST00000543185 UBE2Q2Q8WVN8 375 aa22.62■■□□□ 1.21
HDAC4-215ENST00000543185 FAM177A1Q8N128 213 aaPredicted RBP22.62■■□□□ 1.21
HDAC4-215ENST00000543185 GAS2L2Q8NHY3 880 aa22.62■■□□□ 1.21
HDAC4-215ENST00000543185 AKNAQ7Z591 1439 aa22.62■■□□□ 1.21
HDAC4-215ENST00000543185 HNRNPMP52272 730 aaKnown RBP eCLIP22.61■■□□□ 1.211e-6■■■■□ 22.9
HDAC4-215ENST00000543185 TMEM132AQ24JP5 1023 aa22.61■■□□□ 1.21
HDAC4-215ENST00000543185 PHAXQ9H814 394 aaKnown RBP22.61■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms