RNA–Protein interactions for RNA: ENST00000542813.2

SFSWAP-211, Transcript of splicing factor SWAP, humanhuman

TSL 3

Gene SFSWAP, Length 373 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-211ENST00000542813 STK17AQ9UEE5 414 aa6.44□□□□□ -1.38
SFSWAP-211ENST00000542813 NDUFB9Q9Y6M9 179 aa6.44□□□□□ -1.38
SFSWAP-211ENST00000542813 MOXD2PA6NHM9 499 aa6.43□□□□□ -1.38
SFSWAP-211ENST00000542813 NDUFV2P19404 249 aa6.43□□□□□ -1.38
SFSWAP-211ENST00000542813 GJA5P36382 358 aa6.43□□□□□ -1.38
SFSWAP-211ENST00000542813 MTMR2Q13614 643 aa6.43□□□□□ -1.38
SFSWAP-211ENST00000542813 CFAP70Q5T0N1 1121 aa6.43□□□□□ -1.38
SFSWAP-211ENST00000542813 DESI1Q6ICB0 168 aa6.43□□□□□ -1.38
SFSWAP-211ENST00000542813 PRR7Q8TB68 274 aa6.43□□□□□ -1.38
SFSWAP-211ENST00000542813 E9PSI1 815 aa6.42□□□□□ -1.38
SFSWAP-211ENST00000542813 CAPN5O15484 640 aaPredicted RBP6.42□□□□□ -1.38
SFSWAP-211ENST00000542813 KCNH2Q12809 1159 aa6.42□□□□□ -1.38
SFSWAP-211ENST00000542813 WASHC4Q2M389 1173 aa6.42□□□□□ -1.38
SFSWAP-211ENST00000542813 ADAMTS19Q8TE59 1207 aa6.42□□□□□ -1.38
SFSWAP-211ENST00000542813 NUTM2BA6NNL0 878 aaPredicted RBP6.41□□□□□ -1.38
SFSWAP-211ENST00000542813 NUTM2EB1AL46 878 aaPredicted RBP6.41□□□□□ -1.38
SFSWAP-211ENST00000542813 IGSF3O75054 1194 aa6.41□□□□□ -1.38
SFSWAP-211ENST00000542813 RTL5Q5HYW3 569 aaPredicted RBP6.41□□□□□ -1.38
SFSWAP-211ENST00000542813 LCE2CQ5TA81 110 aa6.41□□□□□ -1.38
SFSWAP-211ENST00000542813 NUTM2DQ5VT03 806 aaPredicted RBP6.41□□□□□ -1.38
SFSWAP-211ENST00000542813 NUTM2AQ8IVF1 878 aaPredicted RBP6.41□□□□□ -1.38
SFSWAP-211ENST00000542813 GJD4Q96KN9 370 aaPredicted RBP6.41□□□□□ -1.38
SFSWAP-211ENST00000542813 PCDHB15Q9Y5E8 787 aa6.41□□□□□ -1.38
SFSWAP-211ENST00000542813 BMP1P13497 986 aa6.4□□□□□ -1.38
SFSWAP-211ENST00000542813 VARSP26640 1264 aaKnown RBP6.4□□□□□ -1.38
SFSWAP-211ENST00000542813 SRPK2P78362 688 aaKnown RBP6.4□□□□□ -1.38
SFSWAP-211ENST00000542813 CCDC27Q2M243 656 aa6.4□□□□□ -1.38
SFSWAP-211ENST00000542813 LINC01559Q495D7 138 aa6.4□□□□□ -1.38
SFSWAP-211ENST00000542813 TRIM46Q7Z4K8 759 aa6.4□□□□□ -1.38
SFSWAP-211ENST00000542813 MPNDQ8N594 471 aa6.4□□□□□ -1.38
SFSWAP-211ENST00000542813 ZNF511Q8NB15 262 aa6.4□□□□□ -1.38
SFSWAP-211ENST00000542813 SLC16A10Q8TF71 515 aa6.4□□□□□ -1.38
SFSWAP-211ENST00000542813 BAP1Q92560 729 aa6.4□□□□□ -1.38
SFSWAP-211ENST00000542813 PPP1R12CQ9BZL4 782 aa6.4□□□□□ -1.38
SFSWAP-211ENST00000542813 IVNS1ABPQ9Y6Y0 642 aa6.4□□□□□ -1.38
SFSWAP-211ENST00000542813 LOC105371045A0A1W2PR82 267 aa6.39□□□□□ -1.39
SFSWAP-211ENST00000542813 PRPF38BQ5VTL8 546 aaKnown RBP6.39□□□□□ -1.39
SFSWAP-211ENST00000542813 CABLES1Q8TDN4 633 aa6.39□□□□□ -1.39
SFSWAP-211ENST00000542813 NXF1Q9UBU9 619 aaKnown RBP6.39□□□□□ -1.39
SFSWAP-211ENST00000542813 TLL2Q9Y6L7 1015 aa6.39□□□□□ -1.39
SFSWAP-211ENST00000542813 CARNS1A5YM72 827 aa6.38□□□□□ -1.39
SFSWAP-211ENST00000542813 SND1Q7KZF4 910 aaKnown RBP eCLIP6.38□□□□□ -1.39
SFSWAP-211ENST00000542813 NPAS3Q8IXF0 933 aa6.38□□□□□ -1.39
SFSWAP-211ENST00000542813 ZBTB3Q9H5J0 574 aa6.38□□□□□ -1.39
SFSWAP-211ENST00000542813 AMOTL2Q9Y2J4 779 aa6.38□□□□□ -1.39
SFSWAP-211ENST00000542813 PALM3A6NDB9 673 aaPredicted RBP6.37□□□□□ -1.39
SFSWAP-211ENST00000542813 VAC14Q08AM6 782 aa6.37□□□□□ -1.39
SFSWAP-211ENST00000542813 LYPD8Q6UX82 237 aa6.37□□□□□ -1.39
SFSWAP-211ENST00000542813 GPR37L1O60883 481 aa6.36□□□□□ -1.39
SFSWAP-211ENST00000542813 LMOD1P29536 600 aaPredicted RBP6.36□□□□□ -1.39
SFSWAP-211ENST00000542813 CTHP32929 405 aa6.36□□□□□ -1.39
SFSWAP-211ENST00000542813 NNTQ13423 1086 aa6.36□□□□□ -1.39
SFSWAP-211ENST00000542813 VRTNQ9H8Y1 702 aa6.36□□□□□ -1.39
SFSWAP-211ENST00000542813 HMX1Q9NP08 348 aaPredicted RBP6.36□□□□□ -1.39
SFSWAP-211ENST00000542813 FAM174AQ8TBP5 190 aa6.35□□□□□ -1.39
SFSWAP-211ENST00000542813 IRF7Q92985 503 aa6.35□□□□□ -1.39
SFSWAP-211ENST00000542813 ZFP42Q96MM3 310 aa6.35□□□□□ -1.39
SFSWAP-211ENST00000542813 TRIM34Q9BYJ4 488 aa6.35□□□□□ -1.39
SFSWAP-211ENST00000542813 ALG2Q9H553 416 aa6.35□□□□□ -1.39
SFSWAP-211ENST00000542813 CFAP99D6REC4 459 aa6.34□□□□□ -1.39
SFSWAP-211ENST00000542813 ADH1CP00326 375 aa6.34□□□□□ -1.39
SFSWAP-211ENST00000542813 F12P00748 615 aaPredicted RBP6.34□□□□□ -1.39
SFSWAP-211ENST00000542813 MRPL14Q6P1L8 145 aaKnown RBP6.34□□□□□ -1.39
SFSWAP-211ENST00000542813 FAM181BA6NEQ2 426 aa6.33□□□□□ -1.4
SFSWAP-211ENST00000542813 TMEM88BA6NKF7 163 aa6.33□□□□□ -1.4
SFSWAP-211ENST00000542813 H3BM21 787 aa6.33□□□□□ -1.4
SFSWAP-211ENST00000542813 ATG7O95352 703 aa6.33□□□□□ -1.4
SFSWAP-211ENST00000542813 TIMP2P16035 220 aa6.33□□□□□ -1.4
SFSWAP-211ENST00000542813 SOX11P35716 441 aa6.33□□□□□ -1.4
SFSWAP-211ENST00000542813 WDR4P57081 412 aaKnown RBP6.33□□□□□ -1.4
SFSWAP-211ENST00000542813 CTDSPL2Q05D32 466 aa6.33□□□□□ -1.4
SFSWAP-211ENST00000542813 SCARF1Q14162 830 aa6.33□□□□□ -1.4
SFSWAP-211ENST00000542813 HELBQ8NG08 1087 aaPredicted RBP6.33□□□□□ -1.4
SFSWAP-211ENST00000542813 CDK15Q96Q40 435 aa6.33□□□□□ -1.4
SFSWAP-211ENST00000542813 UCN2Q96RP3 112 aa6.33□□□□□ -1.4
SFSWAP-211ENST00000542813 MAP10Q9P2G4 905 aa6.33□□□□□ -1.4
SFSWAP-211ENST00000542813 TFIP11Q9UBB9 837 aaKnown RBP6.33□□□□□ -1.4
SFSWAP-211ENST00000542813 GMPRP36959 345 aa6.32□□□□□ -1.4
SFSWAP-211ENST00000542813 CDCA8Q53HL2 280 aa6.32□□□□□ -1.4
SFSWAP-211ENST00000542813 FOXJ1Q92949 421 aa6.32□□□□□ -1.4
SFSWAP-211ENST00000542813 SHROOM4Q9ULL8 1493 aa6.31□□□□□ -1.4
SFSWAP-211ENST00000542813 VEGFBP49765 207 aa6.31□□□□□ -1.4
SFSWAP-211ENST00000542813 B4GALNT3Q6L9W6 998 aa6.31□□□□□ -1.4
SFSWAP-211ENST00000542813 LRRN4Q8WUT4 740 aa6.31□□□□□ -1.4
SFSWAP-211ENST00000542813 TSC1Q92574 1164 aa6.31□□□□□ -1.4
SFSWAP-211ENST00000542813 PURBQ96QR8 312 aaKnown RBP6.31□□□□□ -1.4
SFSWAP-211ENST00000542813 KLF16Q9BXK1 252 aaPredicted RBP6.31□□□□□ -1.4
SFSWAP-211ENST00000542813 MAFBQ9Y5Q3 323 aaPredicted RBP6.31□□□□□ -1.4
SFSWAP-211ENST00000542813 NR5A1Q13285 461 aa6.3□□□□□ -1.4
SFSWAP-211ENST00000542813 ARID5BQ14865 1188 aa6.3□□□□□ -1.4
SFSWAP-211ENST00000542813 BPHLQ86WA6 291 aaPredicted RBP6.3□□□□□ -1.4
SFSWAP-211ENST00000542813 ZSCAN1Q8NBB4 408 aa6.3□□□□□ -1.4
SFSWAP-211ENST00000542813 GNEQ9Y223 722 aaKnown RBP6.3□□□□□ -1.4
SFSWAP-211ENST00000542813 PER1O15534 1290 aaPredicted RBP6.29□□□□□ -1.4
SFSWAP-211ENST00000542813 SEMA3FQ13275 785 aa6.29□□□□□ -1.4
SFSWAP-211ENST00000542813 AGERQ15109 404 aa6.29□□□□□ -1.4
SFSWAP-211ENST00000542813 ERBB4Q15303 1308 aa6.28□□□□□ -1.4
SFSWAP-211ENST00000542813 ZIC2O95409 532 aaPredicted RBP6.28□□□□□ -1.4
SFSWAP-211ENST00000542813 LORP23490 312 aaPredicted RBP6.28□□□□□ -1.4
SFSWAP-211ENST00000542813 C4orf48Q5BLP8 95 aa6.28□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms