RNA–Protein interactions for RNA: ENST00000542274.5

CDH3-203, Transcript of cadherin 3, humanhuman

TSL 2

Gene CDH3, Length 2,746 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-203ENST00000542274 RRP1P56182 461 aaKnown RBP13.95□□□□□ -0.18
CDH3-203ENST00000542274 SLC20A2Q08357 652 aa13.95□□□□□ -0.18
CDH3-203ENST00000542274 MPNDQ8N594 471 aa13.95□□□□□ -0.18
CDH3-203ENST00000542274 EXOC6Q8TAG9 804 aa13.95□□□□□ -0.18
CDH3-203ENST00000542274 ADAMTS13Q76LX8 1427 aa13.94□□□□□ -0.18
CDH3-203ENST00000542274 EP400NLQ6ZTU2 488 aa13.94□□□□□ -0.18
CDH3-203ENST00000542274 DNAJC2Q99543 621 aaKnown RBP13.94□□□□□ -0.18
CDH3-203ENST00000542274 CEP170BQ9Y4F5 1589 aaPredicted RBP13.93□□□□□ -0.18
CDH3-203ENST00000542274 ESPNB1AK53 854 aa13.93□□□□□ -0.18
CDH3-203ENST00000542274 SH3BP1Q9Y3L3 701 aa13.93□□□□□ -0.18
CDH3-203ENST00000542274 EID1Q9Y6B2 187 aa13.93□□□□□ -0.18
CDH3-203ENST00000542274 IRF6O14896 467 aa13.93□□□□□ -0.18
CDH3-203ENST00000542274 APAF1O14727 1248 aa13.92□□□□□ -0.18
CDH3-203ENST00000542274 MTERF4Q7Z6M4 381 aaKnown RBP13.92□□□□□ -0.18
CDH3-203ENST00000542274 SPINK5Q9NQ38 1064 aaPredicted RBP13.92□□□□□ -0.18
CDH3-203ENST00000542274 CDK19Q9BWU1 502 aa13.92□□□□□ -0.18
CDH3-203ENST00000542274 NPC1L1Q9UHC9 1359 aa13.92□□□□□ -0.18
CDH3-203ENST00000542274 PLEKHG1Q9ULL1 1385 aa13.92□□□□□ -0.18
CDH3-203ENST00000542274 MORC1Q86VD1 984 aa13.92□□□□□ -0.18
CDH3-203ENST00000542274 THEMISQ8N1K5 641 aaPredicted RBP13.92□□□□□ -0.18
CDH3-203ENST00000542274 DMRT2Q9Y5R5 561 aa13.92□□□□□ -0.18
CDH3-203ENST00000542274 SLIT1O75093 1534 aa13.91□□□□□ -0.18
CDH3-203ENST00000542274 ARHGAP23Q9P227 1491 aa13.91□□□□□ -0.18
CDH3-203ENST00000542274 GEMIN8Q9NWZ8 242 aaKnown RBP13.91□□□□□ -0.18
CDH3-203ENST00000542274 ABCC11Q96J66 1382 aa13.91□□□□□ -0.18
CDH3-203ENST00000542274 PDE3BQ13370 1112 aa13.91□□□□□ -0.18
CDH3-203ENST00000542274 DLC1Q96QB1 1528 aa13.9□□□□□ -0.18
CDH3-203ENST00000542274 SEMA3FQ13275 785 aa13.9□□□□□ -0.18
CDH3-203ENST00000542274 ERBB4Q15303 1308 aa13.89□□□□□ -0.19
CDH3-203ENST00000542274 ROBO2Q9HCK4 1378 aa13.89□□□□□ -0.19
CDH3-203ENST00000542274 C20orf194Q5TEA3 1177 aa13.89□□□□□ -0.19
CDH3-203ENST00000542274 YY1AP1Q9H869 796 aa13.89□□□□□ -0.19
CDH3-203ENST00000542274 PTPRUQ92729 1446 aa13.89□□□□□ -0.19
CDH3-203ENST00000542274 KNDC1Q76NI1 1749 aa13.89□□□□□ -0.19
CDH3-203ENST00000542274 ANAPC15P60006 121 aa13.88□□□□□ -0.19
CDH3-203ENST00000542274 NEUROD2Q15784 382 aa13.88□□□□□ -0.19
CDH3-203ENST00000542274 DUSP27Q5VZP5 1158 aa13.88□□□□□ -0.19
CDH3-203ENST00000542274 GPATCH11Q8N954 259 aa13.88□□□□□ -0.19
CDH3-203ENST00000542274 CWC22Q9HCG8 908 aaKnown RBP13.88□□□□□ -0.19
CDH3-203ENST00000542274 RRP7AQ9Y3A4 280 aaKnown RBP13.88□□□□□ -0.19
CDH3-203ENST00000542274 NCKAP5LQ9HCH0 1330 aa13.88□□□□□ -0.19
CDH3-203ENST00000542274 XRCC6P12956 609 aaKnown RBP eCLIP13.87□□□□□ -0.19
CDH3-203ENST00000542274 TRIM44Q96DX7 344 aaPredicted RBP13.87□□□□□ -0.19
CDH3-203ENST00000542274 ZNF521Q96K83 1311 aa13.87□□□□□ -0.19
CDH3-203ENST00000542274 SETD1BQ9UPS6 1966 aaKnown RBP13.87□□□□□ -0.19
CDH3-203ENST00000542274 MTHFSP49914 203 aa13.87□□□□□ -0.19
CDH3-203ENST00000542274 PLCB2Q00722 1185 aa13.87□□□□□ -0.19
CDH3-203ENST00000542274 A0A1W2PP64 1363 aa13.87□□□□□ -0.19
CDH3-203ENST00000542274 CPS1P31327 1500 aa13.86□□□□□ -0.19
CDH3-203ENST00000542274 NUTM2FA1L443 756 aa13.86□□□□□ -0.19
CDH3-203ENST00000542274 SETQ01105 290 aaPredicted RBP13.86□□□□□ -0.19
CDH3-203ENST00000542274 CCDC94Q9BW85 323 aaPredicted RBP13.86□□□□□ -0.19
CDH3-203ENST00000542274 GGNBP2Q9H3C7 697 aa13.86□□□□□ -0.19
CDH3-203ENST00000542274 MED14O60244 1454 aa13.86□□□□□ -0.19
CDH3-203ENST00000542274 SKAP1Q86WV1 359 aa13.86□□□□□ -0.19
CDH3-203ENST00000542274 CABP1Q9NZU7 370 aa13.86□□□□□ -0.19
CDH3-203ENST00000542274 ANKRD36BQ8N2N9 1353 aa13.86□□□□□ -0.19
CDH3-203ENST00000542274 PANK2Q9BZ23 570 aa13.85□□□□□ -0.19
CDH3-203ENST00000542274 INSRP06213 1382 aa13.85□□□□□ -0.19
CDH3-203ENST00000542274 GOLGA2Q08379 1002 aa13.85□□□□□ -0.19
CDH3-203ENST00000542274 AMOTL2Q9Y2J4 779 aa13.85□□□□□ -0.19
CDH3-203ENST00000542274 ZNF142P52746 1687 aaPredicted RBP13.85□□□□□ -0.19
CDH3-203ENST00000542274 SIPA1L2Q9P2F8 1722 aaPredicted RBP13.85□□□□□ -0.19
CDH3-203ENST00000542274 FBLN1P23142 703 aa13.84□□□□□ -0.19
CDH3-203ENST00000542274 NBPF20Q3BBV1 942 aa13.84□□□□□ -0.19
CDH3-203ENST00000542274 BANK1Q8NDB2 785 aa13.84□□□□□ -0.19
CDH3-203ENST00000542274 CGNL1Q0VF96 1302 aa13.84□□□□□ -0.19
CDH3-203ENST00000542274 ATAD2Q6PL18 1390 aa13.84□□□□□ -0.19
CDH3-203ENST00000542274 TECPR2O15040 1411 aa13.84□□□□□ -0.19
CDH3-203ENST00000542274 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP13.84□□□□□ -0.19
CDH3-203ENST00000542274 CRBNQ96SW2 442 aa13.84□□□□□ -0.19
CDH3-203ENST00000542274 CD163L1Q9NR16 1453 aa13.84□□□□□ -0.19
CDH3-203ENST00000542274 LOC102724159A0A0B4J2E5 919 aa13.84□□□□□ -0.19
CDH3-203ENST00000542274 WASLO00401 505 aaPredicted RBP13.84□□□□□ -0.19
CDH3-203ENST00000542274 PWP2Q15269 919 aaKnown RBP13.84□□□□□ -0.19
CDH3-203ENST00000542274 GOLGA6L3A6NEY3 463 aa13.83□□□□□ -0.2
CDH3-203ENST00000542274 TERF1P54274 439 aa13.83□□□□□ -0.2
CDH3-203ENST00000542274 FAM135BQ49AJ0 1406 aa13.82□□□□□ -0.2
CDH3-203ENST00000542274 SLFN5Q08AF3 891 aa13.82□□□□□ -0.2
CDH3-203ENST00000542274 CEP120Q8N960 986 aa13.82□□□□□ -0.2
CDH3-203ENST00000542274 POLR3AO14802 1390 aaPredicted RBP13.82□□□□□ -0.2
CDH3-203ENST00000542274 KCNJ4P48050 445 aa13.82□□□□□ -0.2
CDH3-203ENST00000542274 ZNF692Q9BU19 519 aaPredicted RBP13.82□□□□□ -0.2
CDH3-203ENST00000542274 TBX22Q9Y458 520 aa13.82□□□□□ -0.2
CDH3-203ENST00000542274 SLC4A3P48751 1232 aa13.81□□□□□ -0.2
CDH3-203ENST00000542274 RBM33Q96EV2 1170 aaKnown RBP13.81□□□□□ -0.2
CDH3-203ENST00000542274 TCERG1O14776 1098 aaKnown RBP13.81□□□□□ -0.2
CDH3-203ENST00000542274 ANKLE2Q86XL3 938 aa13.81□□□□□ -0.2
CDH3-203ENST00000542274 PRR36Q9H6K5 1346 aa13.8□□□□□ -0.2
CDH3-203ENST00000542274 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.8□□□□□ -0.2
CDH3-203ENST00000542274 NUDT16Q96DE0 195 aaKnown RBP13.8□□□□□ -0.2
CDH3-203ENST00000542274 SHPRHQ149N8 1683 aa13.8□□□□□ -0.2
CDH3-203ENST00000542274 PPIP5K1Q6PFW1 1433 aa13.8□□□□□ -0.2
CDH3-203ENST00000542274 KCNA6P17658 529 aa13.8□□□□□ -0.2
CDH3-203ENST00000542274 TERF2IPQ9NYB0 399 aa13.8□□□□□ -0.2
CDH3-203ENST00000542274 USP32Q8NFA0 1604 aa13.8□□□□□ -0.2
CDH3-203ENST00000542274 BCAR3O75815 825 aa13.79□□□□□ -0.2
CDH3-203ENST00000542274 LMOD3Q0VAK6 560 aa13.79□□□□□ -0.2
CDH3-203ENST00000542274 HDGFL2Q7Z4V5 671 aaPredicted RBP13.79□□□□□ -0.2
CDH3-203ENST00000542274 FYB1O15117 783 aa13.78□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms