RNA–Protein interactions for RNA: ENST00000541713.5

PTPN1-202, Transcript of protein tyrosine phosphatase, non-receptor type 1, humanhuman

TSL 2 BASIC

Gene PTPN1, Length 3,469 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN1-202ENST00000541713 PPIP5K1Q6PFW1 1433 aa16.91■□□□□ 0.3
PTPN1-202ENST00000541713 ARAP3Q8WWN8 1544 aa16.91■□□□□ 0.3
PTPN1-202ENST00000541713 MCM4P33991 863 aa16.91■□□□□ 0.3
PTPN1-202ENST00000541713 ANTXR1Q9H6X2 564 aa16.9■□□□□ 0.3
PTPN1-202ENST00000541713 EIF4A2Q14240 407 aaKnown RBP16.9■□□□□ 0.3
PTPN1-202ENST00000541713 TRAK2O60296 914 aa16.9■□□□□ 0.3
PTPN1-202ENST00000541713 AMPHP49418 695 aa16.89■□□□□ 0.29
PTPN1-202ENST00000541713 MEIS3Q99687 375 aa16.89■□□□□ 0.29
PTPN1-202ENST00000541713 HECW2Q9P2P5 1572 aa16.89■□□□□ 0.29
PTPN1-202ENST00000541713 G2E3Q7L622 706 aa16.89■□□□□ 0.29
PTPN1-202ENST00000541713 SHPRHQ149N8 1683 aa16.89■□□□□ 0.29
PTPN1-202ENST00000541713 NSD2O96028 1365 aa16.89■□□□□ 0.29
PTPN1-202ENST00000541713 SIGLEC1Q9BZZ2 1709 aa16.88■□□□□ 0.29
PTPN1-202ENST00000541713 CHMP5Q9NZZ3 219 aa16.88■□□□□ 0.29
PTPN1-202ENST00000541713 EXOC6BQ9Y2D4 811 aa16.88■□□□□ 0.29
PTPN1-202ENST00000541713 ACEP12821 1306 aa16.88■□□□□ 0.29
PTPN1-202ENST00000541713 TSPOAP1O95153 1857 aa16.88■□□□□ 0.29
PTPN1-202ENST00000541713 PRR36Q9H6K5 1346 aa16.87■□□□□ 0.29
PTPN1-202ENST00000541713 NEXMIFQ5QGS0 1516 aa16.87■□□□□ 0.29
PTPN1-202ENST00000541713 RTF1Q92541 710 aaKnown RBP16.87■□□□□ 0.29
PTPN1-202ENST00000541713 RIMS2Q9UQ26 1411 aa16.87■□□□□ 0.29
PTPN1-202ENST00000541713 GOLGA6L3A6NEY3 463 aa16.86■□□□□ 0.29
PTPN1-202ENST00000541713 TSPYL4Q9UJ04 414 aa16.86■□□□□ 0.29
PTPN1-202ENST00000541713 CFAP44Q96MT7 982 aa16.86■□□□□ 0.29
PTPN1-202ENST00000541713 EIF2S2P20042 333 aaKnown RBP16.85■□□□□ 0.29
PTPN1-202ENST00000541713 MAP4K4O95819 1239 aaPredicted RBP16.84■□□□□ 0.29
PTPN1-202ENST00000541713 CT47B1P0C2W7 299 aaPredicted RBP16.84■□□□□ 0.29
PTPN1-202ENST00000541713 XPCQ01831 940 aaPredicted RBP16.84■□□□□ 0.29
PTPN1-202ENST00000541713 PTPRMP28827 1452 aa16.84■□□□□ 0.29
PTPN1-202ENST00000541713 CD163L1Q9NR16 1453 aa16.84■□□□□ 0.29
PTPN1-202ENST00000541713 PPLO60437 1756 aa16.84■□□□□ 0.29
PTPN1-202ENST00000541713 ALDH1L2Q3SY69 923 aa16.84■□□□□ 0.29
PTPN1-202ENST00000541713 SSFA2P28290 1259 aa16.84■□□□□ 0.29
PTPN1-202ENST00000541713 LTKP29376 864 aa16.84■□□□□ 0.29
PTPN1-202ENST00000541713 NLRP6P59044 892 aa16.84■□□□□ 0.29
PTPN1-202ENST00000541713 IFT57Q9NWB7 429 aa16.84■□□□□ 0.29
PTPN1-202ENST00000541713 TNPO1Q92973 898 aaKnown RBP16.83■□□□□ 0.29
PTPN1-202ENST00000541713 CALD1Q05682 793 aaKnown RBP16.83■□□□□ 0.28
PTPN1-202ENST00000541713 RILPL2Q969X0 211 aa16.83■□□□□ 0.28
PTPN1-202ENST00000541713 KIAA1210Q9ULL0 1709 aa16.83■□□□□ 0.28
PTPN1-202ENST00000541713 ANXA1P04083 346 aa16.83■□□□□ 0.28
PTPN1-202ENST00000541713 XRCC6P12956 609 aaKnown RBP eCLIP16.82■□□□□ 0.28
PTPN1-202ENST00000541713 GSPT1P15170 499 aaKnown RBP16.82■□□□□ 0.28
PTPN1-202ENST00000541713 ABCF1Q8NE71 845 aaKnown RBP eCLIP16.82■□□□□ 0.28
PTPN1-202ENST00000541713 GAS2L2Q8NHY3 880 aa16.82■□□□□ 0.28
PTPN1-202ENST00000541713 PIK3C2BO00750 1634 aa16.82■□□□□ 0.28
PTPN1-202ENST00000541713 TRIM6-TRIM34B2RNG4 842 aa16.82■□□□□ 0.28
PTPN1-202ENST00000541713 FKBP5Q13451 457 aaPredicted RBP16.82■□□□□ 0.28
PTPN1-202ENST00000541713 LMTK2Q8IWU2 1503 aa16.82■□□□□ 0.28
PTPN1-202ENST00000541713 MYO5BQ9ULV0 1848 aa16.82■□□□□ 0.28
PTPN1-202ENST00000541713 API5Q9BZZ5 524 aaKnown RBP16.82■□□□□ 0.28
PTPN1-202ENST00000541713 IL16Q14005 1332 aa16.81■□□□□ 0.28
PTPN1-202ENST00000541713 AAMPQ13685 434 aa16.81■□□□□ 0.28
PTPN1-202ENST00000541713 SETBP1Q9Y6X0 1596 aa16.81■□□□□ 0.28
PTPN1-202ENST00000541713 NLRP1Q9C000 1473 aa16.81■□□□□ 0.28
PTPN1-202ENST00000541713 PUS7Q96PZ0 661 aaKnown RBP16.81■□□□□ 0.28
PTPN1-202ENST00000541713 LARP6Q9BRS8 491 aaKnown RBP16.81■□□□□ 0.28
PTPN1-202ENST00000541713 MTHFSDQ2M296 383 aaKnown RBP16.8■□□□□ 0.28
PTPN1-202ENST00000541713 DIP2CQ9Y2E4 1556 aa16.8■□□□□ 0.28
PTPN1-202ENST00000541713 IL1RAPL2Q9NP60 686 aa16.8■□□□□ 0.28
PTPN1-202ENST00000541713 TTC21BQ7Z4L5 1316 aa16.8■□□□□ 0.28
PTPN1-202ENST00000541713 PKP1Q13835 747 aa16.79■□□□□ 0.28
PTPN1-202ENST00000541713 LMOD3Q0VAK6 560 aa16.79■□□□□ 0.28
PTPN1-202ENST00000541713 PLEKHM2Q8IWE5 1019 aa16.79■□□□□ 0.28
PTPN1-202ENST00000541713 LRRC7Q96NW7 1537 aa16.79■□□□□ 0.28
PTPN1-202ENST00000541713 GCC1Q96CN9 775 aa16.78■□□□□ 0.28
PTPN1-202ENST00000541713 RRAGDQ9NQL2 400 aaPredicted RBP16.78■□□□□ 0.28
PTPN1-202ENST00000541713 AMOTL2Q9Y2J4 779 aa16.78■□□□□ 0.28
PTPN1-202ENST00000541713 ARHGEF28Q8N1W1 1705 aaKnown RBP16.78■□□□□ 0.28
PTPN1-202ENST00000541713 IFT172Q9UG01 1749 aa16.78■□□□□ 0.28
PTPN1-202ENST00000541713 CDC45O75419 566 aa16.78■□□□□ 0.28
PTPN1-202ENST00000541713 BMP2KLQ5H9B9 411 aa16.78■□□□□ 0.28
PTPN1-202ENST00000541713 ZC3H13Q5T200 1668 aaKnown RBP16.77■□□□□ 0.28
PTPN1-202ENST00000541713 ZMYM3Q14202 1370 aa16.77■□□□□ 0.28
PTPN1-202ENST00000541713 MCTP1Q6DN14 999 aa16.77■□□□□ 0.28
PTPN1-202ENST00000541713 ALKQ9UM73 1620 aa16.77■□□□□ 0.27
PTPN1-202ENST00000541713 SDSP20132 328 aa16.76■□□□□ 0.27
PTPN1-202ENST00000541713 MAP3K19Q56UN5 1328 aa16.76■□□□□ 0.27
PTPN1-202ENST00000541713 ROBO2Q9HCK4 1378 aa16.76■□□□□ 0.27
PTPN1-202ENST00000541713 NAP1L5Q96NT1 182 aaPredicted RBP16.76■□□□□ 0.27
PTPN1-202ENST00000541713 ZGPATQ8N5A5 531 aaKnown RBP16.75■□□□□ 0.27
PTPN1-202ENST00000541713 COL3A1P02461 1466 aaPredicted RBP16.75■□□□□ 0.27
PTPN1-202ENST00000541713 ABTB2Q8N961 1025 aa16.75■□□□□ 0.27
PTPN1-202ENST00000541713 KIF2CQ99661 725 aa16.75■□□□□ 0.27
PTPN1-202ENST00000541713 ARHGEF40Q8TER5 1519 aa16.75■□□□□ 0.27
PTPN1-202ENST00000541713 MSH6P52701 1360 aa16.75■□□□□ 0.27
PTPN1-202ENST00000541713 STK31Q9BXU1 1019 aa16.75■□□□□ 0.27
PTPN1-202ENST00000541713 DDX49Q9Y6V7 483 aaKnown RBP16.75■□□□□ 0.27
PTPN1-202ENST00000541713 FAM135BQ49AJ0 1406 aa16.74■□□□□ 0.27
PTPN1-202ENST00000541713 PNPLA6Q8IY17 1366 aa16.74■□□□□ 0.27
PTPN1-202ENST00000541713 DDX54Q8TDD1 881 aaKnown RBP16.74■□□□□ 0.27
PTPN1-202ENST00000541713 NEO1Q92859 1461 aa16.74■□□□□ 0.27
PTPN1-202ENST00000541713 K7ELQ4 463 aaPredicted RBP16.74■□□□□ 0.27
PTPN1-202ENST00000541713 TRHP20396 242 aaPredicted RBP16.74■□□□□ 0.27
PTPN1-202ENST00000541713 MPNDQ8N594 471 aa16.74■□□□□ 0.27
PTPN1-202ENST00000541713 CPS1P31327 1500 aa16.74■□□□□ 0.27
PTPN1-202ENST00000541713 ZNF853P0CG23 659 aa16.73■□□□□ 0.27
PTPN1-202ENST00000541713 HDGFP51858 240 aaKnown RBP16.73■□□□□ 0.27
PTPN1-202ENST00000541713 CEP85Q6P2H3 762 aa16.73■□□□□ 0.27
PTPN1-202ENST00000541713 EYA1Q99502 592 aa16.73■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms