RNA–Protein interactions for RNA: ENST00000541108.1

CLIP1-215, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 1,658 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-215ENST00000541108 MED1Q15648 1581 aaPredicted RBP23.42■■□□□ 1.34
CLIP1-215ENST00000541108 TOM1O60784 492 aa23.41■■□□□ 1.34
CLIP1-215ENST00000541108 RSPH6AQ9H0K4 717 aa23.41■■□□□ 1.34
CLIP1-215ENST00000541108 TCP11L2Q8N4U5 519 aa23.41■■□□□ 1.34
CLIP1-215ENST00000541108 ROBO1Q9Y6N7 1651 aa23.4■■□□□ 1.34
CLIP1-215ENST00000541108 SALL2Q9Y467 1007 aaPredicted RBP23.4■■□□□ 1.34
CLIP1-215ENST00000541108 IQSEC2Q5JU85 1478 aa23.4■■□□□ 1.34
CLIP1-215ENST00000541108 SENP3-EIF4A1A0A087X0R7 540 aa23.39■■□□□ 1.34
CLIP1-215ENST00000541108 ZNF521Q96K83 1311 aa23.39■■□□□ 1.33
CLIP1-215ENST00000541108 NEFMP07197 916 aa23.38■■□□□ 1.33
CLIP1-215ENST00000541108 MAPK8IP3Q9UPT6 1336 aa23.38■■□□□ 1.33
CLIP1-215ENST00000541108 RGPD1P0DJD0 1748 aa23.38■■□□□ 1.33
CLIP1-215ENST00000541108 AHDC1Q5TGY3 1603 aaPredicted RBP23.37■■□□□ 1.33
CLIP1-215ENST00000541108 CCDC27Q2M243 656 aa23.37■■□□□ 1.33
CLIP1-215ENST00000541108 CRYBG1Q9Y4K1 1723 aa23.37■■□□□ 1.33
CLIP1-215ENST00000541108 PRKAR2BP31323 418 aa23.36■■□□□ 1.33
CLIP1-215ENST00000541108 LRRC59Q96AG4 307 aaKnown RBP23.36■■□□□ 1.33
CLIP1-215ENST00000541108 HMOX1P09601 288 aa23.35■■□□□ 1.33
CLIP1-215ENST00000541108 PHF23Q9BUL5 403 aaPredicted RBP23.35■■□□□ 1.33
CLIP1-215ENST00000541108 IGSF1Q8N6C5 1336 aa23.34■■□□□ 1.33
CLIP1-215ENST00000541108 CPDO75976 1380 aa23.33■■□□□ 1.33
CLIP1-215ENST00000541108 SULT6B1Q6IMI4 303 aa23.33■■□□□ 1.33
CLIP1-215ENST00000541108 KDRP35968 1356 aa23.33■■□□□ 1.32
CLIP1-215ENST00000541108 TMPOP42166 694 aaKnown RBP23.32■■□□□ 1.32
CLIP1-215ENST00000541108 WWC1Q8IX03 1113 aa23.32■■□□□ 1.32
CLIP1-215ENST00000541108 CABLES1Q8TDN4 633 aa23.32■■□□□ 1.32
CLIP1-215ENST00000541108 EYA1Q99502 592 aa23.32■■□□□ 1.32
CLIP1-215ENST00000541108 ABCC6O95255 1503 aa23.32■■□□□ 1.32
CLIP1-215ENST00000541108 GOLGA2Q08379 1002 aa23.32■■□□□ 1.32
CLIP1-215ENST00000541108 PLEKHG5O94827 1062 aa23.31■■□□□ 1.32
CLIP1-215ENST00000541108 ZC3H6P61129 1189 aaKnown RBP23.31■■□□□ 1.32
CLIP1-215ENST00000541108 NEUROD2Q15784 382 aa23.29■■□□□ 1.32
CLIP1-215ENST00000541108 ZBTB7CA1YPR0 619 aa23.28■■□□□ 1.32
CLIP1-215ENST00000541108 WDR63Q8IWG1 891 aa23.28■■□□□ 1.32
CLIP1-215ENST00000541108 PHACTR3Q96KR7 559 aa23.28■■□□□ 1.32
CLIP1-215ENST00000541108 RRP7AQ9Y3A4 280 aaKnown RBP23.28■■□□□ 1.32
CLIP1-215ENST00000541108 AEBP1Q8IUX7 1158 aa23.28■■□□□ 1.32
CLIP1-215ENST00000541108 CDCA7LQ96GN5 454 aa23.27■■□□□ 1.32
CLIP1-215ENST00000541108 AXIN2Q9Y2T1 843 aa23.27■■□□□ 1.32
CLIP1-215ENST00000541108 UBAP1LF5GYI3 381 aa23.26■■□□□ 1.31
CLIP1-215ENST00000541108 RIPK4P57078 832 aa23.26■■□□□ 1.31
CLIP1-215ENST00000541108 NFE2L2Q16236 605 aa23.26■■□□□ 1.31
CLIP1-215ENST00000541108 CERKQ8TCT0 537 aa23.26■■□□□ 1.31
CLIP1-215ENST00000541108 LTV1Q96GA3 475 aaPredicted RBP23.26■■□□□ 1.31
CLIP1-215ENST00000541108 COL18A1P39060 1754 aa23.26■■□□□ 1.31
CLIP1-215ENST00000541108 KIAA0232Q92628 1395 aa23.25■■□□□ 1.31
CLIP1-215ENST00000541108 SLFN5Q08AF3 891 aa23.25■■□□□ 1.31
CLIP1-215ENST00000541108 ANKRD24Q8TF21 1146 aa23.25■■□□□ 1.31
CLIP1-215ENST00000541108 E9PSI1 815 aa23.24■■□□□ 1.31
CLIP1-215ENST00000541108 HAP1P54257 671 aaPredicted RBP23.24■■□□□ 1.31
CLIP1-215ENST00000541108 TRMT2AQ8IZ69 625 aaKnown RBP23.24■■□□□ 1.31
CLIP1-215ENST00000541108 ABCA3Q99758 1704 aa23.24■■□□□ 1.31
CLIP1-215ENST00000541108 ERBB3P21860 1342 aa23.23■■□□□ 1.31
CLIP1-215ENST00000541108 TRIM35Q9UPQ4 493 aa23.23■■□□□ 1.31
CLIP1-215ENST00000541108 PHLPP1O60346 1717 aa23.23■■□□□ 1.31
CLIP1-215ENST00000541108 PIP4K2BP78356 416 aa23.22■■□□□ 1.31
CLIP1-215ENST00000541108 NBPF6Q5VWK0 638 aa23.22■■□□□ 1.31
CLIP1-215ENST00000541108 NBPF4Q96M43 638 aa23.22■■□□□ 1.31
CLIP1-215ENST00000541108 COL22A1Q8NFW1 1626 aaPredicted RBP23.22■■□□□ 1.31
CLIP1-215ENST00000541108 COL16A1Q07092 1604 aaPredicted RBP23.21■■□□□ 1.31
CLIP1-215ENST00000541108 NCAPD2Q15021 1401 aa23.21■■□□□ 1.31
CLIP1-215ENST00000541108 RGPD5Q99666 1765 aa23.21■■□□□ 1.31
CLIP1-215ENST00000541108 LMOD3Q0VAK6 560 aa23.21■■□□□ 1.31
CLIP1-215ENST00000541108 DUSP27Q5VZP5 1158 aa23.21■■□□□ 1.31
CLIP1-215ENST00000541108 PRDM11Q9NQV5 511 aa23.21■■□□□ 1.31
CLIP1-215ENST00000541108 IL16Q14005 1332 aa23.19■■□□□ 1.3
CLIP1-215ENST00000541108 CAMTA1Q9Y6Y1 1673 aa23.18■■□□□ 1.3
CLIP1-215ENST00000541108 CHRNA2Q15822 529 aa23.18■■□□□ 1.3
CLIP1-215ENST00000541108 GAS2L2Q8NHY3 880 aa23.17■■□□□ 1.3
CLIP1-215ENST00000541108 SPINK5Q9NQ38 1064 aaPredicted RBP23.17■■□□□ 1.3
CLIP1-215ENST00000541108 FAM208AQ9UK61 1670 aaKnown RBP23.17■■□□□ 1.3
CLIP1-215ENST00000541108 CALD1Q05682 793 aaKnown RBP23.16■■□□□ 1.3
CLIP1-215ENST00000541108 RGPD2P0DJD1 1756 aa23.16■■□□□ 1.3
CLIP1-215ENST00000541108 LMO7Q8WWI1 1683 aa23.15■■□□□ 1.3
CLIP1-215ENST00000541108 DLG5Q8TDM6 1919 aa23.15■■□□□ 1.3
CLIP1-215ENST00000541108 MTHFSDQ2M296 383 aaKnown RBP23.14■■□□□ 1.29
CLIP1-215ENST00000541108 MYH16Q9H6N6 1097 aa23.14■■□□□ 1.29
CLIP1-215ENST00000541108 USHBP1Q8N6Y0 703 aa23.13■■□□□ 1.29
CLIP1-215ENST00000541108 SUPT16HQ9Y5B9 1047 aaKnown RBP23.13■■□□□ 1.29
CLIP1-215ENST00000541108 PLEKHG2Q9H7P9 1386 aa23.12■■□□□ 1.29
CLIP1-215ENST00000541108 FAM83GA6ND36 823 aa23.12■■□□□ 1.29
CLIP1-215ENST00000541108 HTATSF1O43719 755 aaKnown RBP23.12■■□□□ 1.29
CLIP1-215ENST00000541108 CSB-PGBD3P0DP91 1061 aa23.12■■□□□ 1.29
CLIP1-215ENST00000541108 NLRP2Q9NX02 1062 aa23.11■■□□□ 1.29
CLIP1-215ENST00000541108 GTF3C3Q9Y5Q9 886 aa23.11■■□□□ 1.29
CLIP1-215ENST00000541108 AMOTQ4VCS5 1084 aa23.1■■□□□ 1.29
CLIP1-215ENST00000541108 RCAN3Q9UKA8 241 aa23.1■■□□□ 1.29
CLIP1-215ENST00000541108 WDR17Q8IZU2 1322 aa23.1■■□□□ 1.29
CLIP1-215ENST00000541108 COL5A2P05997 1499 aaPredicted RBP23.1■■□□□ 1.29
CLIP1-215ENST00000541108 PLEKHO1Q53GL0 409 aaPredicted RBP23.08■■□□□ 1.29
CLIP1-215ENST00000541108 COL14A1Q05707 1796 aaKnown RBP23.07■■□□□ 1.28
CLIP1-215ENST00000541108 RTF1Q92541 710 aaKnown RBP23.07■■□□□ 1.28
CLIP1-215ENST00000541108 RNF123Q5XPI4 1314 aa23.07■■□□□ 1.28
CLIP1-215ENST00000541108 GNAT3A8MTJ3 354 aa23.06■■□□□ 1.28
CLIP1-215ENST00000541108 IFT57Q9NWB7 429 aa23.06■■□□□ 1.28
CLIP1-215ENST00000541108 GNAI1P63096 354 aa23.06■■□□□ 1.28
CLIP1-215ENST00000541108 RAPGEF4Q8WZA2 1011 aa23.06■■□□□ 1.28
CLIP1-215ENST00000541108 EVA1CP58658 441 aa23.05■■□□□ 1.28
CLIP1-215ENST00000541108 CFAP44Q96MT7 982 aa23.05■■□□□ 1.28
CLIP1-215ENST00000541108 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP23.05■■□□□ 1.282e-7■□□□□ 9.4
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms