RNA–Protein interactions for RNA: ENST00000539232.1

LMO3-220, Transcript of LIM domain only 3, humanhuman

TSL 5

Gene LMO3, Length 580 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMO3-220ENST00000539232 USP6P35125 1406 aa10.24□□□□□ -0.77
LMO3-220ENST00000539232 TNS4Q8IZW8 715 aa10.23□□□□□ -0.77
LMO3-220ENST00000539232 TMC1Q8TDI8 760 aa10.23□□□□□ -0.77
LMO3-220ENST00000539232 PRDM11Q9NQV5 511 aa10.23□□□□□ -0.77
LMO3-220ENST00000539232 TRPM3Q9HCF6 1732 aaPredicted RBP10.23□□□□□ -0.77
LMO3-220ENST00000539232 SBNO2Q9Y2G9 1366 aa10.23□□□□□ -0.77
LMO3-220ENST00000539232 CPSF1Q10570 1443 aaKnown RBP10.23□□□□□ -0.77
LMO3-220ENST00000539232 CD163L1Q9NR16 1453 aa10.23□□□□□ -0.77
LMO3-220ENST00000539232 SOX12O15370 315 aa10.22□□□□□ -0.77
LMO3-220ENST00000539232 GCP02774 474 aa10.22□□□□□ -0.77
LMO3-220ENST00000539232 NLRP6P59044 892 aa10.22□□□□□ -0.77
LMO3-220ENST00000539232 PDE3BQ13370 1112 aa10.22□□□□□ -0.77
LMO3-220ENST00000539232 NME9Q86XW9 330 aa10.22□□□□□ -0.77
LMO3-220ENST00000539232 SUGP2Q8IX01 1082 aaKnown RBP eCLIP10.22□□□□□ -0.77
LMO3-220ENST00000539232 SGIP1Q9BQI5 828 aa10.22□□□□□ -0.77
LMO3-220ENST00000539232 SPATA31A1Q5TZJ5 1347 aa10.22□□□□□ -0.77
LMO3-220ENST00000539232 USP47Q96K76 1375 aa10.22□□□□□ -0.77
LMO3-220ENST00000539232 PLSCR1O15162 318 aa10.21□□□□□ -0.77
LMO3-220ENST00000539232 ARXQ96QS3 562 aa10.21□□□□□ -0.77
LMO3-220ENST00000539232 MTFR1LQ9H019 292 aa10.21□□□□□ -0.77
LMO3-220ENST00000539232 TOPAZ1Q8N9V7 1692 aa10.21□□□□□ -0.78
LMO3-220ENST00000539232 QRICH2Q9H0J4 1663 aa10.21□□□□□ -0.78
LMO3-220ENST00000539232 ZBTB7CA1YPR0 619 aa10.2□□□□□ -0.78
LMO3-220ENST00000539232 C11orf95C9JLR9 678 aaPredicted RBP10.2□□□□□ -0.78
LMO3-220ENST00000539232 FBLN1P23142 703 aa10.2□□□□□ -0.78
LMO3-220ENST00000539232 APLP1P51693 650 aa10.2□□□□□ -0.78
LMO3-220ENST00000539232 LARP1Q6PKG0 1096 aaKnown RBP10.2□□□□□ -0.78
LMO3-220ENST00000539232 CLSPNQ9HAW4 1339 aa10.2□□□□□ -0.78
LMO3-220ENST00000539232 GPBP1L1Q9HC44 474 aaPredicted RBP10.2□□□□□ -0.78
LMO3-220ENST00000539232 STRN4Q9NRL3 753 aa10.2□□□□□ -0.78
LMO3-220ENST00000539232 AXIN2Q9Y2T1 843 aa10.2□□□□□ -0.78
LMO3-220ENST00000539232 ALS2Q96Q42 1657 aa10.19□□□□□ -0.78
LMO3-220ENST00000539232 ATP10DQ9P241 1426 aa10.19□□□□□ -0.78
LMO3-220ENST00000539232 KTN1Q86UP2 1357 aaKnown RBP10.19□□□□□ -0.78
LMO3-220ENST00000539232 NLRP13Q86W25 1043 aa10.19□□□□□ -0.78
LMO3-220ENST00000539232 DNAJC5GQ8N7S2 189 aa10.19□□□□□ -0.78
LMO3-220ENST00000539232 BCL11BQ9C0K0 894 aaPredicted RBP10.19□□□□□ -0.78
LMO3-220ENST00000539232 TIMELESSQ9UNS1 1208 aa10.19□□□□□ -0.78
LMO3-220ENST00000539232 A0A1W2PP64 1363 aa10.18□□□□□ -0.78
LMO3-220ENST00000539232 HSPA5P11021 654 aaKnown RBP10.17□□□□□ -0.78
LMO3-220ENST00000539232 BARGINQ6ZT62 677 aa10.17□□□□□ -0.78
LMO3-220ENST00000539232 ARHGEF25Q86VW2 580 aa10.17□□□□□ -0.78
LMO3-220ENST00000539232 ZNF692Q9BU19 519 aaPredicted RBP10.17□□□□□ -0.78
LMO3-220ENST00000539232 CARD14Q9BXL6 1004 aa10.17□□□□□ -0.78
LMO3-220ENST00000539232 USP35Q9P2H5 1018 aa10.17□□□□□ -0.78
LMO3-220ENST00000539232 CPDO75976 1380 aa10.16□□□□□ -0.78
LMO3-220ENST00000539232 GRIN3BO60391 1043 aa10.16□□□□□ -0.78
LMO3-220ENST00000539232 STK32BQ9NY57 414 aa10.16□□□□□ -0.78
LMO3-220ENST00000539232 PUS7Q96PZ0 661 aaKnown RBP10.15□□□□□ -0.78
LMO3-220ENST00000539232 GOLGB1Q14789 3259 aaKnown RBP10.15□□□□□ -0.78
LMO3-220ENST00000539232 BRD4O60885 1362 aaPredicted RBP10.14□□□□□ -0.79
LMO3-220ENST00000539232 SBF2Q86WG5 1849 aa10.14□□□□□ -0.79
LMO3-220ENST00000539232 TTC21AQ8NDW8 1320 aa10.14□□□□□ -0.79
LMO3-220ENST00000539232 TMF1P82094 1093 aa10.14□□□□□ -0.79
LMO3-220ENST00000539232 SLC15A2Q16348 729 aa10.14□□□□□ -0.79
LMO3-220ENST00000539232 HDGFL2Q7Z4V5 671 aaPredicted RBP10.14□□□□□ -0.79
LMO3-220ENST00000539232 AATKQ6ZMQ8 1374 aa10.14□□□□□ -0.79
LMO3-220ENST00000539232 USP31Q70CQ4 1352 aa10.14□□□□□ -0.79
LMO3-220ENST00000539232 SLIT3O75094 1523 aa10.13□□□□□ -0.79
LMO3-220ENST00000539232 EVA1CP58658 441 aa10.13□□□□□ -0.79
LMO3-220ENST00000539232 PROM2Q8N271 834 aa10.13□□□□□ -0.79
LMO3-220ENST00000539232 GGNBP2Q9H3C7 697 aa10.13□□□□□ -0.79
LMO3-220ENST00000539232 TERF2IPQ9NYB0 399 aa10.13□□□□□ -0.79
LMO3-220ENST00000539232 CRYBG1Q9Y4K1 1723 aa10.13□□□□□ -0.79
LMO3-220ENST00000539232 FYB1O15117 783 aa10.12□□□□□ -0.79
LMO3-220ENST00000539232 JMYQ8N9B5 988 aa10.12□□□□□ -0.79
LMO3-220ENST00000539232 POLR3GLQ9BT43 218 aa10.12□□□□□ -0.79
LMO3-220ENST00000539232 PIK3C2AO00443 1686 aa10.12□□□□□ -0.79
LMO3-220ENST00000539232 COL5A2P05997 1499 aaPredicted RBP10.11□□□□□ -0.79
LMO3-220ENST00000539232 PEAK1Q9H792 1746 aa10.11□□□□□ -0.79
LMO3-220ENST00000539232 OVOS2A0A0G2JMS6 1433 aa10.11□□□□□ -0.79
LMO3-220ENST00000539232 OVOS2A0A0J9YW53 1432 aa10.11□□□□□ -0.79
LMO3-220ENST00000539232 OVOS2Q6IE36 1432 aa10.11□□□□□ -0.79
LMO3-220ENST00000539232 EDC4Q6P2E9 1401 aaKnown RBP10.11□□□□□ -0.79
LMO3-220ENST00000539232 ADCY9O60503 1353 aa10.11□□□□□ -0.79
LMO3-220ENST00000539232 PARP4Q9UKK3 1724 aaKnown RBP10.1□□□□□ -0.79
LMO3-220ENST00000539232 PTF1AQ7RTS3 328 aa10.1□□□□□ -0.79
LMO3-220ENST00000539232 TCP11L2Q8N4U5 519 aa10.1□□□□□ -0.79
LMO3-220ENST00000539232 WWC3Q9ULE0 1092 aa10.1□□□□□ -0.79
LMO3-220ENST00000539232 NFAT5O94916 1531 aa10.1□□□□□ -0.79
LMO3-220ENST00000539232 ANKRD36BQ8N2N9 1353 aa10.1□□□□□ -0.79
LMO3-220ENST00000539232 ITSN1Q15811 1721 aa10.1□□□□□ -0.79
LMO3-220ENST00000539232 PHRF1Q9P1Y6 1649 aaKnown RBP10.09□□□□□ -0.79
LMO3-220ENST00000539232 YBX3P16989 372 aaKnown RBP eCLIP10.09□□□□□ -0.79
LMO3-220ENST00000539232 EIF4G2P78344 907 aaKnown RBP eCLIP10.09□□□□□ -0.79
LMO3-220ENST00000539232 RRS1Q15050 365 aaKnown RBP10.09□□□□□ -0.79
LMO3-220ENST00000539232 KLHL34Q8N239 644 aa10.09□□□□□ -0.79
LMO3-220ENST00000539232 KCNH5Q8NCM2 988 aa10.09□□□□□ -0.79
LMO3-220ENST00000539232 ZNF526Q8TF50 670 aaPredicted RBP10.09□□□□□ -0.79
LMO3-220ENST00000539232 THRAP3Q9Y2W1 955 aaKnown RBP10.09□□□□□ -0.79
LMO3-220ENST00000539232 MAP3K19Q56UN5 1328 aa10.08□□□□□ -0.8
LMO3-220ENST00000539232 KIF3CO14782 793 aa10.08□□□□□ -0.8
LMO3-220ENST00000539232 TXNRD1Q16881 649 aa10.08□□□□□ -0.8
LMO3-220ENST00000539232 TOM1L2Q6ZVM7 507 aa10.08□□□□□ -0.8
LMO3-220ENST00000539232 KLRG1Q96E93 195 aa10.08□□□□□ -0.8
LMO3-220ENST00000539232 LTV1Q96GA3 475 aaPredicted RBP10.08□□□□□ -0.8
LMO3-220ENST00000539232 LMO7Q8WWI1 1683 aa10.08□□□□□ -0.8
LMO3-220ENST00000539232 WDR17Q8IZU2 1322 aa10.07□□□□□ -0.8
LMO3-220ENST00000539232 WDR90Q96KV7 1748 aa10.07□□□□□ -0.8
LMO3-220ENST00000539232 CSB-PGBD3P0DP91 1061 aa10.06□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms