RNA–Protein interactions for RNA: ENST00000534885.5

TNFRSF1A-205, Transcript of TNF receptor superfamily member 1A, humanhuman

TSL 1 (best)

Gene TNFRSF1A, Length 2,069 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF1A-205ENST00000534885 HOXC9P31274 260 aa26.81■■□□□ 1.88
TNFRSF1A-205ENST00000534885 MED1Q15648 1581 aaPredicted RBP26.81■■□□□ 1.88
TNFRSF1A-205ENST00000534885 RGPD1P0DJD0 1748 aa26.8■■□□□ 1.88
TNFRSF1A-205ENST00000534885 PRKAR2BP31323 418 aa26.8■■□□□ 1.88
TNFRSF1A-205ENST00000534885 NGEFQ8N5V2 710 aa26.8■■□□□ 1.88
TNFRSF1A-205ENST00000534885 SPATA31A3Q5VYP0 1347 aa26.79■■□□□ 1.88
TNFRSF1A-205ENST00000534885 MAPK8IP3Q9UPT6 1336 aa26.78■■□□□ 1.88
TNFRSF1A-205ENST00000534885 PNNQ9H307 717 aaKnown RBP26.78■■□□□ 1.88
TNFRSF1A-205ENST00000534885 RTL1A6NKG5 1358 aa26.77■■□□□ 1.88
TNFRSF1A-205ENST00000534885 MYT1Q01538 1121 aa26.77■■□□□ 1.88
TNFRSF1A-205ENST00000534885 SOS2Q07890 1332 aaPredicted RBP26.77■■□□□ 1.88
TNFRSF1A-205ENST00000534885 WWC1Q8IX03 1113 aa26.77■■□□□ 1.88
TNFRSF1A-205ENST00000534885 PHRF1Q9P1Y6 1649 aaKnown RBP26.76■■□□□ 1.87
TNFRSF1A-205ENST00000534885 NHSL1Q5SYE7 1610 aa26.76■■□□□ 1.87
TNFRSF1A-205ENST00000534885 ZBTB7CA1YPR0 619 aa26.75■■□□□ 1.87
TNFRSF1A-205ENST00000534885 GOLGA2Q08379 1002 aa26.75■■□□□ 1.87
TNFRSF1A-205ENST00000534885 AEBP1Q8IUX7 1158 aa26.75■■□□□ 1.87
TNFRSF1A-205ENST00000534885 PHF23Q9BUL5 403 aaPredicted RBP26.75■■□□□ 1.87
TNFRSF1A-205ENST00000534885 SUPT16HQ9Y5B9 1047 aaKnown RBP26.75■■□□□ 1.87
TNFRSF1A-205ENST00000534885 TMPOP42166 694 aaKnown RBP26.74■■□□□ 1.87
TNFRSF1A-205ENST00000534885 ARHGEF25Q86VW2 580 aa26.74■■□□□ 1.87
TNFRSF1A-205ENST00000534885 SULT6B1Q6IMI4 303 aa26.74■■□□□ 1.87
TNFRSF1A-205ENST00000534885 IP6K1Q92551 441 aa26.74■■□□□ 1.87
TNFRSF1A-205ENST00000534885 PHACTR3Q96KR7 559 aa26.74■■□□□ 1.87
TNFRSF1A-205ENST00000534885 CRYBG1Q9Y4K1 1723 aa26.73■■□□□ 1.87
TNFRSF1A-205ENST00000534885 AEBP2Q6ZN18 517 aaPredicted RBP26.73■■□□□ 1.87
TNFRSF1A-205ENST00000534885 ARHGEF10O15013 1369 aa26.73■■□□□ 1.87
TNFRSF1A-205ENST00000534885 CABLES1Q8TDN4 633 aa26.72■■□□□ 1.87
TNFRSF1A-205ENST00000534885 SPINK5Q9NQ38 1064 aaPredicted RBP26.72■■□□□ 1.87
TNFRSF1A-205ENST00000534885 CCDC27Q2M243 656 aa26.71■■□□□ 1.87
TNFRSF1A-205ENST00000534885 LTV1Q96GA3 475 aaPredicted RBP26.7■■□□□ 1.87
TNFRSF1A-205ENST00000534885 EYA1Q99502 592 aa26.7■■□□□ 1.87
TNFRSF1A-205ENST00000534885 ROBO1Q9Y6N7 1651 aa26.7■■□□□ 1.87
TNFRSF1A-205ENST00000534885 NCBP3Q53F19 620 aaKnown RBP26.7■■□□□ 1.86
TNFRSF1A-205ENST00000534885 NEFMP07197 916 aa26.69■■□□□ 1.86
TNFRSF1A-205ENST00000534885 SLFN5Q08AF3 891 aa26.69■■□□□ 1.86
TNFRSF1A-205ENST00000534885 IGSF1Q8N6C5 1336 aa26.69■■□□□ 1.86
TNFRSF1A-205ENST00000534885 ZC3H6P61129 1189 aaKnown RBP26.69■■□□□ 1.86
TNFRSF1A-205ENST00000534885 DUSP27Q5VZP5 1158 aa26.69■■□□□ 1.86
TNFRSF1A-205ENST00000534885 TRIM35Q9UPQ4 493 aa26.67■■□□□ 1.86
TNFRSF1A-205ENST00000534885 RIPK4P57078 832 aa26.67■■□□□ 1.86
TNFRSF1A-205ENST00000534885 KDRP35968 1356 aa26.66■■□□□ 1.86
TNFRSF1A-205ENST00000534885 TRMT2AQ8IZ69 625 aaKnown RBP26.65■■□□□ 1.86
TNFRSF1A-205ENST00000534885 RGPD5Q99666 1765 aa26.65■■□□□ 1.86
TNFRSF1A-205ENST00000534885 E9PSI1 815 aa26.64■■□□□ 1.86
TNFRSF1A-205ENST00000534885 NFE2L2Q16236 605 aa26.64■■□□□ 1.86
TNFRSF1A-205ENST00000534885 WDR63Q8IWG1 891 aa26.64■■□□□ 1.85
TNFRSF1A-205ENST00000534885 DLG5Q8TDM6 1919 aa26.64■■□□□ 1.85
TNFRSF1A-205ENST00000534885 AXIN2Q9Y2T1 843 aa26.64■■□□□ 1.85
TNFRSF1A-205ENST00000534885 RGPD2P0DJD1 1756 aa26.63■■□□□ 1.85
TNFRSF1A-205ENST00000534885 COL18A1P39060 1754 aa26.6■■□□□ 1.85
TNFRSF1A-205ENST00000534885 ABCA3Q99758 1704 aa26.6■■□□□ 1.85
TNFRSF1A-205ENST00000534885 USHBP1Q8N6Y0 703 aa26.59■■□□□ 1.85
TNFRSF1A-205ENST00000534885 AHDC1Q5TGY3 1603 aaPredicted RBP26.59■■□□□ 1.85
TNFRSF1A-205ENST00000534885 NBPF6Q5VWK0 638 aa26.59■■□□□ 1.85
TNFRSF1A-205ENST00000534885 NBPF4Q96M43 638 aa26.59■■□□□ 1.85
TNFRSF1A-205ENST00000534885 RCAN3Q9UKA8 241 aa26.59■■□□□ 1.85
TNFRSF1A-205ENST00000534885 LRRC59Q96AG4 307 aaKnown RBP26.58■■□□□ 1.85
TNFRSF1A-205ENST00000534885 KIAA0232Q92628 1395 aa26.58■■□□□ 1.85
TNFRSF1A-205ENST00000534885 NEFLP07196 543 aa26.58■■□□□ 1.84
TNFRSF1A-205ENST00000534885 ANKRD24Q8TF21 1146 aa26.58■■□□□ 1.84
TNFRSF1A-205ENST00000534885 FKBP8Q14318 412 aa26.57■■□□□ 1.84
TNFRSF1A-205ENST00000534885 CHRNA2Q15822 529 aa26.56■■□□□ 1.84
TNFRSF1A-205ENST00000534885 CPDO75976 1380 aa26.56■■□□□ 1.84
TNFRSF1A-205ENST00000534885 ERBB3P21860 1342 aa26.54■■□□□ 1.84
TNFRSF1A-205ENST00000534885 IRX6P78412 446 aaPredicted RBP26.54■■□□□ 1.84
TNFRSF1A-205ENST00000534885 RNF123Q5XPI4 1314 aa26.53■■□□□ 1.84
TNFRSF1A-205ENST00000534885 THUMPD2Q9BTF0 503 aaKnown RBP26.53■■□□□ 1.84
TNFRSF1A-205ENST00000534885 TOM1O60784 492 aa26.52■■□□□ 1.84
TNFRSF1A-205ENST00000534885 HAP1P54257 671 aaPredicted RBP26.52■■□□□ 1.84
TNFRSF1A-205ENST00000534885 ABCC6O95255 1503 aa26.52■■□□□ 1.84
TNFRSF1A-205ENST00000534885 CAMTA1Q9Y6Y1 1673 aa26.52■■□□□ 1.84
TNFRSF1A-205ENST00000534885 FAM83GA6ND36 823 aa26.51■■□□□ 1.83
TNFRSF1A-205ENST00000534885 MTHFSDQ2M296 383 aaKnown RBP26.51■■□□□ 1.83
TNFRSF1A-205ENST00000534885 PIP4K2BP78356 416 aa26.51■■□□□ 1.83
TNFRSF1A-205ENST00000534885 IL16Q14005 1332 aa26.51■■□□□ 1.83
TNFRSF1A-205ENST00000534885 MYH16Q9H6N6 1097 aa26.5■■□□□ 1.83
TNFRSF1A-205ENST00000534885 NCAPD2Q15021 1401 aa26.5■■□□□ 1.83
TNFRSF1A-205ENST00000534885 PHLPP1O60346 1717 aa26.49■■□□□ 1.83
TNFRSF1A-205ENST00000534885 LMOD3Q0VAK6 560 aa26.49■■□□□ 1.83
TNFRSF1A-205ENST00000534885 DCTN1Q14203 1278 aa26.49■■□□□ 1.83
TNFRSF1A-205ENST00000534885 PRDM11Q9NQV5 511 aa26.49■■□□□ 1.83
TNFRSF1A-205ENST00000534885 TSR2Q969E8 191 aaKnown RBP26.48■■□□□ 1.83
TNFRSF1A-205ENST00000534885 FANCIQ9NVI1 1328 aa26.48■■□□□ 1.83
TNFRSF1A-205ENST00000534885 LMO7Q8WWI1 1683 aa26.47■■□□□ 1.83
TNFRSF1A-205ENST00000534885 COL16A1Q07092 1604 aaPredicted RBP26.47■■□□□ 1.83
TNFRSF1A-205ENST00000534885 UBAP1LF5GYI3 381 aa26.46■■□□□ 1.83
TNFRSF1A-205ENST00000534885 GAS2L2Q8NHY3 880 aa26.45■■□□□ 1.83
TNFRSF1A-205ENST00000534885 RRP1P56182 461 aaKnown RBP26.44■■□□□ 1.82
TNFRSF1A-205ENST00000534885 COL22A1Q8NFW1 1626 aaPredicted RBP26.44■■□□□ 1.82
TNFRSF1A-205ENST00000534885 MCM10Q7L590 875 aa26.43■■□□□ 1.82
TNFRSF1A-205ENST00000534885 FAM208AQ9UK61 1670 aaKnown RBP26.43■■□□□ 1.82
TNFRSF1A-205ENST00000534885 CALD1Q05682 793 aaKnown RBP26.43■■□□□ 1.82
TNFRSF1A-205ENST00000534885 NLRP2Q9NX02 1062 aa26.43■■□□□ 1.82
TNFRSF1A-205ENST00000534885 LAS1LQ9Y4W2 734 aaKnown RBP26.42■■□□□ 1.82
TNFRSF1A-205ENST00000534885 CSB-PGBD3P0DP91 1061 aa26.42■■□□□ 1.82
TNFRSF1A-205ENST00000534885 IFT57Q9NWB7 429 aa26.39■■□□□ 1.82
TNFRSF1A-205ENST00000534885 ZNF853P0CG23 659 aa26.38■■□□□ 1.81
TNFRSF1A-205ENST00000534885 EXOSC9Q06265 439 aaKnown RBP26.38■■□□□ 1.81
TNFRSF1A-205ENST00000534885 COL5A2P05997 1499 aaPredicted RBP26.38■■□□□ 1.81
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms