RNA–Protein interactions for RNA: ENST00000534172.1

CSMD3-210, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 5

Gene CSMD3, Length 2,486 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-210ENST00000534172 NR5A1Q13285 461 aa6.34□□□□□ -1.4
CSMD3-210ENST00000534172 VASH1Q7L8A9 365 aaPredicted RBP6.34□□□□□ -1.4
CSMD3-210ENST00000534172 RNF135Q8IUD6 432 aa6.34□□□□□ -1.4
CSMD3-210ENST00000534172 ESPNB1AK53 854 aa6.33□□□□□ -1.4
CSMD3-210ENST00000534172 ATP9BO43861 1147 aa6.33□□□□□ -1.4
CSMD3-210ENST00000534172 C4orf48Q5BLP8 95 aa6.33□□□□□ -1.4
CSMD3-210ENST00000534172 PLEKHM2Q8IWE5 1019 aa6.33□□□□□ -1.4
CSMD3-210ENST00000534172 SNIP1Q8TAD8 396 aaKnown RBP6.33□□□□□ -1.4
CSMD3-210ENST00000534172 PPP1R12CQ9BZL4 782 aa6.33□□□□□ -1.4
CSMD3-210ENST00000534172 KCTD15Q96SI1 283 aaPredicted RBP6.32□□□□□ -1.4
CSMD3-210ENST00000534172 ACIN1Q9UKV3 1341 aaKnown RBP6.32□□□□□ -1.4
CSMD3-210ENST00000534172 PRR20EP86478 221 aa6.32□□□□□ -1.4
CSMD3-210ENST00000534172 PRR20CP86479 221 aa6.32□□□□□ -1.4
CSMD3-210ENST00000534172 PRR20DP86480 221 aa6.32□□□□□ -1.4
CSMD3-210ENST00000534172 PRR20BP86481 221 aa6.32□□□□□ -1.4
CSMD3-210ENST00000534172 PRR20AP86496 221 aa6.32□□□□□ -1.4
CSMD3-210ENST00000534172 ADAMTS19Q8TE59 1207 aa6.32□□□□□ -1.4
CSMD3-210ENST00000534172 EMID1Q96A84 441 aaPredicted RBP6.32□□□□□ -1.4
CSMD3-210ENST00000534172 ESF1Q9H501 851 aaKnown RBP6.32□□□□□ -1.4
CSMD3-210ENST00000534172 CHIC2Q9UKJ5 165 aa6.32□□□□□ -1.4
CSMD3-210ENST00000534172 SIAH2O43255 324 aa6.31□□□□□ -1.4
CSMD3-210ENST00000534172 PHTF2Q8N3S3 785 aa6.31□□□□□ -1.4
CSMD3-210ENST00000534172 C1orf115Q9H7X2 142 aa6.31□□□□□ -1.4
CSMD3-210ENST00000534172 ADH1CP00326 375 aa6.31□□□□□ -1.4
CSMD3-210ENST00000534172 SKIP12755 728 aa6.31□□□□□ -1.4
CSMD3-210ENST00000534172 EML3Q32P44 896 aa6.31□□□□□ -1.4
CSMD3-210ENST00000534172 TRIM50Q86XT4 487 aa6.31□□□□□ -1.4
CSMD3-210ENST00000534172 CYP4X1Q8N118 509 aa6.31□□□□□ -1.4
CSMD3-210ENST00000534172 MRGPRX2Q96LB1 330 aa6.31□□□□□ -1.4
CSMD3-210ENST00000534172 PGPEP1Q9NXJ5 209 aa6.3□□□□□ -1.4
CSMD3-210ENST00000534172 DOLKQ9UPQ8 538 aa6.3□□□□□ -1.4
CSMD3-210ENST00000534172 WASF2Q9Y6W5 498 aa6.3□□□□□ -1.4
CSMD3-210ENST00000534172 PALM3A6NDB9 673 aaPredicted RBP6.3□□□□□ -1.4
CSMD3-210ENST00000534172 ARID5BQ14865 1188 aa6.3□□□□□ -1.4
CSMD3-210ENST00000534172 PLPP7Q8NBV4 271 aa6.3□□□□□ -1.4
CSMD3-210ENST00000534172 TFIP11Q9UBB9 837 aaKnown RBP6.3□□□□□ -1.4
CSMD3-210ENST00000534172 GIGYF1O75420 1035 aaPredicted RBP6.29□□□□□ -1.4
CSMD3-210ENST00000534172 MYCP01106 439 aaPredicted RBP6.29□□□□□ -1.4
CSMD3-210ENST00000534172 USP4Q13107 963 aa6.29□□□□□ -1.4
CSMD3-210ENST00000534172 TTC24A2A3L6 582 aaPredicted RBP6.28□□□□□ -1.4
CSMD3-210ENST00000534172 FOXC1Q12948 553 aa6.28□□□□□ -1.4
CSMD3-210ENST00000534172 PBXIP1Q96AQ6 731 aa6.28□□□□□ -1.4
CSMD3-210ENST00000534172 PKD2L1Q9P0L9 805 aa6.28□□□□□ -1.4
CSMD3-210ENST00000534172 MAFBQ9Y5Q3 323 aaPredicted RBP6.28□□□□□ -1.4
CSMD3-210ENST00000534172 EMILIN1Q9Y6C2 1016 aa6.28□□□□□ -1.4
CSMD3-210ENST00000534172 ATP5J2-PTCD1G3V325 749 aa6.28□□□□□ -1.4
CSMD3-210ENST00000534172 ATP1A2P50993 1020 aa6.28□□□□□ -1.4
CSMD3-210ENST00000534172 VRTNQ9H8Y1 702 aa6.28□□□□□ -1.4
CSMD3-210ENST00000534172 NOD1Q9Y239 953 aa6.28□□□□□ -1.4
CSMD3-210ENST00000534172 USP17L5A8MUK1 530 aa6.27□□□□□ -1.4
CSMD3-210ENST00000534172 GDF9O60383 454 aa6.27□□□□□ -1.4
CSMD3-210ENST00000534172 LMOD1P29536 600 aaPredicted RBP6.27□□□□□ -1.4
CSMD3-210ENST00000534172 TBC1D9Q6ZT07 1266 aa6.27□□□□□ -1.4
CSMD3-210ENST00000534172 CCDC116Q8IYX3 515 aa6.27□□□□□ -1.4
CSMD3-210ENST00000534172 UCN2Q96RP3 112 aa6.27□□□□□ -1.4
CSMD3-210ENST00000534172 LAPTM4AQ15012 233 aa6.27□□□□□ -1.41
CSMD3-210ENST00000534172 ARID3AQ99856 593 aa6.27□□□□□ -1.41
CSMD3-210ENST00000534172 ALDH1A1P00352 501 aa6.26□□□□□ -1.41
CSMD3-210ENST00000534172 TRIM26Q12899 539 aaPredicted RBP6.26□□□□□ -1.41
CSMD3-210ENST00000534172 INTS6LQ5JSJ4 861 aaKnown RBP6.26□□□□□ -1.41
CSMD3-210ENST00000534172 CFAP70Q5T0N1 1121 aa6.26□□□□□ -1.41
CSMD3-210ENST00000534172 PCDHB11Q9Y5F2 797 aa6.26□□□□□ -1.41
CSMD3-210ENST00000534172 USP17L3A6NCW0 530 aa6.26□□□□□ -1.41
CSMD3-210ENST00000534172 USP17L4A6NCW7 530 aa6.26□□□□□ -1.41
CSMD3-210ENST00000534172 FSHRP23945 695 aa6.26□□□□□ -1.41
CSMD3-210ENST00000534172 GRM5P41594 1212 aa6.26□□□□□ -1.41
CSMD3-210ENST00000534172 MYT1Q01538 1121 aa6.26□□□□□ -1.41
CSMD3-210ENST00000534172 USP17L2Q6R6M4 530 aa6.26□□□□□ -1.41
CSMD3-210ENST00000534172 USP17L1Q7RTZ2 530 aa6.26□□□□□ -1.41
CSMD3-210ENST00000534172 LARP1Q6PKG0 1096 aaKnown RBP6.25□□□□□ -1.41
CSMD3-210ENST00000534172 TRAF7Q6Q0C0 670 aa6.25□□□□□ -1.41
CSMD3-210ENST00000534172 RBM19Q9Y4C8 960 aaKnown RBP6.25□□□□□ -1.41
CSMD3-210ENST00000534172 CC2D2BQ6DHV5 1058 aa6.25□□□□□ -1.41
CSMD3-210ENST00000534172 TOR4AQ9NXH8 423 aa6.25□□□□□ -1.41
CSMD3-210ENST00000534172 TLL2Q9Y6L7 1015 aa6.25□□□□□ -1.41
CSMD3-210ENST00000534172 ELOAQ14241 798 aaKnown RBP6.24□□□□□ -1.41
CSMD3-210ENST00000534172 CCDC85AQ96PX6 553 aaPredicted RBP6.24□□□□□ -1.41
CSMD3-210ENST00000534172 ERVH48-1M5A8F1 160 aa6.24□□□□□ -1.41
CSMD3-210ENST00000534172 ATG7O95352 703 aa6.24□□□□□ -1.41
CSMD3-210ENST00000534172 PIK3CDO00329 1044 aa6.23□□□□□ -1.41
CSMD3-210ENST00000534172 NNTQ13423 1086 aa6.23□□□□□ -1.41
CSMD3-210ENST00000534172 OXLD1Q5BKU9 147 aa6.23□□□□□ -1.41
CSMD3-210ENST00000534172 ERVK-9P63128 1117 aa6.23□□□□□ -1.41
CSMD3-210ENST00000534172 CYP2U1Q7Z449 544 aa6.23□□□□□ -1.41
CSMD3-210ENST00000534172 LARGE2Q8N3Y3 721 aa6.23□□□□□ -1.41
CSMD3-210ENST00000534172 MKRN1Q9UHC7 482 aaKnown RBP6.23□□□□□ -1.41
CSMD3-210ENST00000534172 PDZRN3Q9UPQ7 1066 aa6.23□□□□□ -1.41
CSMD3-210ENST00000534172 FAM196BA6NMK8 535 aa6.22□□□□□ -1.41
CSMD3-210ENST00000534172 NCOA4Q13772 614 aa6.22□□□□□ -1.41
CSMD3-210ENST00000534172 PPP1R26Q5T8A7 1209 aaPredicted RBP6.22□□□□□ -1.41
CSMD3-210ENST00000534172 DGAT1O75907 488 aa6.22□□□□□ -1.41
CSMD3-210ENST00000534172 CSB-PGBD3P0DP91 1061 aa6.22□□□□□ -1.41
CSMD3-210ENST00000534172 RFX1P22670 979 aa6.22□□□□□ -1.41
CSMD3-210ENST00000534172 KANK4Q5T7N3 995 aaPredicted RBP6.22□□□□□ -1.41
CSMD3-210ENST00000534172 NRG2O14511 850 aaPredicted RBP6.21□□□□□ -1.41
CSMD3-210ENST00000534172 RAB15P59190 212 aa6.21□□□□□ -1.41
CSMD3-210ENST00000534172 ESCO1Q5FWF5 840 aa6.21□□□□□ -1.41
CSMD3-210ENST00000534172 SRPK2P78362 688 aaKnown RBP6.21□□□□□ -1.42
CSMD3-210ENST00000534172 DNAAF2Q9NVR5 837 aaKnown RBP6.21□□□□□ -1.42
CSMD3-210ENST00000534172 USTQ9Y2C2 406 aa6.21□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms