RNA–Protein interactions for RNA: ENST00000533018.1

PCF11-206, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

TSL 3

Gene PCF11, Length 580 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-206ENST00000533018 ARHGEF25Q86VW2 580 aa25.21■■□□□ 1.63
PCF11-206ENST00000533018 CAMKK2Q96RR4 588 aa25.2■■□□□ 1.62
PCF11-206ENST00000533018 MON2Q7Z3U7 1717 aa25.2■■□□□ 1.62
PCF11-206ENST00000533018 WDR17Q8IZU2 1322 aa25.19■■□□□ 1.62
PCF11-206ENST00000533018 HDGFL2Q7Z4V5 671 aaPredicted RBP25.19■■□□□ 1.62
PCF11-206ENST00000533018 DDB1Q16531 1140 aa25.18■■□□□ 1.62
PCF11-206ENST00000533018 SLC12A5Q9H2X9 1139 aa25.18■■□□□ 1.62
PCF11-206ENST00000533018 C11orf95C9JLR9 678 aaPredicted RBP25.15■■□□□ 1.62
PCF11-206ENST00000533018 NME9Q86XW9 330 aa25.15■■□□□ 1.62
PCF11-206ENST00000533018 TERF2IPQ9NYB0 399 aa25.14■■□□□ 1.62
PCF11-206ENST00000533018 PARD3Q8TEW0 1356 aa25.14■■□□□ 1.61
PCF11-206ENST00000533018 OVOS2A0A0G2JMS6 1433 aa25.13■■□□□ 1.61
PCF11-206ENST00000533018 OVOS2A0A0J9YW53 1432 aa25.13■■□□□ 1.61
PCF11-206ENST00000533018 OVOS2Q6IE36 1432 aa25.13■■□□□ 1.61
PCF11-206ENST00000533018 NFAT5O94916 1531 aa25.13■■□□□ 1.61
PCF11-206ENST00000533018 LRRC37A3O60309 1634 aa25.13■■□□□ 1.61
PCF11-206ENST00000533018 LRP5O75197 1615 aa25.13■■□□□ 1.61
PCF11-206ENST00000533018 CDCA7Q9BWT1 371 aaPredicted RBP25.12■■□□□ 1.61
PCF11-206ENST00000533018 CARD10Q9BWT7 1032 aa25.12■■□□□ 1.61
PCF11-206ENST00000533018 CD163L1Q9NR16 1453 aa25.12■■□□□ 1.61
PCF11-206ENST00000533018 WNK3Q9BYP7 1800 aa25.12■■□□□ 1.61
PCF11-206ENST00000533018 ST20-MTHFSA0A0A6YYL1 179 aa25.11■■□□□ 1.61
PCF11-206ENST00000533018 USP31Q70CQ4 1352 aa25.1■■□□□ 1.61
PCF11-206ENST00000533018 NBPF14Q5TI25 921 aa25.1■■□□□ 1.61
PCF11-206ENST00000533018 PUS7Q96PZ0 661 aaKnown RBP25.08■■□□□ 1.61
PCF11-206ENST00000533018 EDC4Q6P2E9 1401 aaKnown RBP25.08■■□□□ 1.61
PCF11-206ENST00000533018 LTN1O94822 1766 aa25.08■■□□□ 1.6
PCF11-206ENST00000533018 SBF2Q86WG5 1849 aa25.07■■□□□ 1.6
PCF11-206ENST00000533018 RREB1Q92766 1687 aa25.07■■□□□ 1.6
PCF11-206ENST00000533018 A0A1W2PP64 1363 aa25.07■■□□□ 1.6
PCF11-206ENST00000533018 PEAK1Q9H792 1746 aa25.07■■□□□ 1.6
PCF11-206ENST00000533018 EXOC5O00471 708 aa25.07■■□□□ 1.6
PCF11-206ENST00000533018 MARCH10Q8NA82 808 aaPredicted RBP25.06■■□□□ 1.6
PCF11-206ENST00000533018 NUP188Q5SRE5 1749 aa25.06■■□□□ 1.6
PCF11-206ENST00000533018 USP54Q70EL1 1684 aa25.05■■□□□ 1.6
PCF11-206ENST00000533018 SLC24A1O60721 1099 aa25.05■■□□□ 1.6
PCF11-206ENST00000533018 TESK2Q96S53 571 aa25.05■■□□□ 1.6
PCF11-206ENST00000533018 NLRP2Q9NX02 1062 aa25.05■■□□□ 1.6
PCF11-206ENST00000533018 CCDC7Q96M83 1385 aa25.05■■□□□ 1.6
PCF11-206ENST00000533018 ABCC6O95255 1503 aa25.04■■□□□ 1.6
PCF11-206ENST00000533018 BCL11BQ9C0K0 894 aaPredicted RBP25.02■■□□□ 1.6
PCF11-206ENST00000533018 PTF1AQ7RTS3 328 aa25.01■■□□□ 1.59
PCF11-206ENST00000533018 ANKRD24Q8TF21 1146 aa25.01■■□□□ 1.59
PCF11-206ENST00000533018 ERBB3P21860 1342 aa25.01■■□□□ 1.59
PCF11-206ENST00000533018 NINLQ9Y2I6 1382 aa25.01■■□□□ 1.59
PCF11-206ENST00000533018 PLSCR1O15162 318 aa25■■□□□ 1.59
PCF11-206ENST00000533018 KAT6BQ8WYB5 2073 aa24.98■■□□□ 1.59
PCF11-206ENST00000533018 COG3Q96JB2 828 aa24.98■■□□□ 1.59
PCF11-206ENST00000533018 TMF1P82094 1093 aa24.97■■□□□ 1.59
PCF11-206ENST00000533018 IL2RBP14784 551 aa24.96■■□□□ 1.59
PCF11-206ENST00000533018 LTV1Q96GA3 475 aaPredicted RBP24.96■■□□□ 1.59
PCF11-206ENST00000533018 RGPD3A6NKT7 1758 aaPredicted RBP24.95■■□□□ 1.59
PCF11-206ENST00000533018 RGPD4Q7Z3J3 1758 aa24.95■■□□□ 1.59
PCF11-206ENST00000533018 USP47Q96K76 1375 aa24.95■■□□□ 1.59
PCF11-206ENST00000533018 BCL9O00512 1426 aa24.95■■□□□ 1.58
PCF11-206ENST00000533018 TNS2Q63HR2 1409 aa24.95■■□□□ 1.58
PCF11-206ENST00000533018 IP6K1Q92551 441 aa24.93■■□□□ 1.58
PCF11-206ENST00000533018 ACSBG1Q96GR2 724 aa24.92■■□□□ 1.58
PCF11-206ENST00000533018 PCGF6Q9BYE7 350 aa24.92■■□□□ 1.58
PCF11-206ENST00000533018 ANKRD36BQ8N2N9 1353 aa24.92■■□□□ 1.58
PCF11-206ENST00000533018 KCNQ2O43526 872 aa24.91■■□□□ 1.58
PCF11-206ENST00000533018 AMPHP49418 695 aa24.91■■□□□ 1.58
PCF11-206ENST00000533018 FBLN1P23142 703 aa24.9■■□□□ 1.58
PCF11-206ENST00000533018 PROM2Q8N271 834 aa24.89■■□□□ 1.58
PCF11-206ENST00000533018 SPON1Q9HCB6 807 aa24.89■■□□□ 1.58
PCF11-206ENST00000533018 PPP1R1BQ9UD71 204 aaPredicted RBP24.89■■□□□ 1.58
PCF11-206ENST00000533018 MAP3K19Q56UN5 1328 aa24.88■■□□□ 1.57
PCF11-206ENST00000533018 CDCA8Q53HL2 280 aa24.88■■□□□ 1.57
PCF11-206ENST00000533018 ANO8Q9HCE9 1232 aaPredicted RBP24.88■■□□□ 1.57
PCF11-206ENST00000533018 HOXC9P31274 260 aa24.87■■□□□ 1.57
PCF11-206ENST00000533018 TXNRD1Q16881 649 aa24.87■■□□□ 1.57
PCF11-206ENST00000533018 GGNBP2Q9H3C7 697 aa24.86■■□□□ 1.57
PCF11-206ENST00000533018 FAM208AQ9UK61 1670 aaKnown RBP24.85■■□□□ 1.57
PCF11-206ENST00000533018 DDX54Q8TDD1 881 aaKnown RBP24.85■■□□□ 1.57
PCF11-206ENST00000533018 NHSQ6T4R5 1651 aa24.85■■□□□ 1.57
PCF11-206ENST00000533018 STK32BQ9NY57 414 aa24.84■■□□□ 1.57
PCF11-206ENST00000533018 FYB1O15117 783 aa24.83■■□□□ 1.57
PCF11-206ENST00000533018 RRS1Q15050 365 aaKnown RBP24.83■■□□□ 1.57
PCF11-206ENST00000533018 TIMELESSQ9UNS1 1208 aa24.82■■□□□ 1.56
PCF11-206ENST00000533018 RGPD2P0DJD1 1756 aa24.81■■□□□ 1.56
PCF11-206ENST00000533018 BTAF1O14981 1849 aa24.79■■□□□ 1.56
PCF11-206ENST00000533018 PDGFDQ9GZP0 370 aaPredicted RBP24.79■■□□□ 1.56
PCF11-206ENST00000533018 KIF20BQ96Q89 1820 aa24.79■■□□□ 1.56
PCF11-206ENST00000533018 ZBTB7AO95365 584 aa24.78■■□□□ 1.56
PCF11-206ENST00000533018 SLC15A2Q16348 729 aa24.78■■□□□ 1.56
PCF11-206ENST00000533018 SYTL4Q96C24 671 aaPredicted RBP24.77■■□□□ 1.56
PCF11-206ENST00000533018 RTL1A6NKG5 1358 aa24.77■■□□□ 1.56
PCF11-206ENST00000533018 CASZ1Q86V15 1759 aa24.76■■□□□ 1.55
PCF11-206ENST00000533018 CLSPNQ9HAW4 1339 aa24.76■■□□□ 1.55
PCF11-206ENST00000533018 SMG6Q86US8 1419 aaKnown RBP24.75■■□□□ 1.55
PCF11-206ENST00000533018 USHBP1Q8N6Y0 703 aa24.74■■□□□ 1.55
PCF11-206ENST00000533018 ZCRB1Q8TBF4 217 aaKnown RBP24.74■■□□□ 1.55
PCF11-206ENST00000533018 POLR3GLQ9BT43 218 aa24.74■■□□□ 1.55
PCF11-206ENST00000533018 ATF5Q9Y2D1 282 aaPredicted RBP24.74■■□□□ 1.55
PCF11-206ENST00000533018 NBPF6Q5VWK0 638 aa24.73■■□□□ 1.55
PCF11-206ENST00000533018 NBPF4Q96M43 638 aa24.73■■□□□ 1.55
PCF11-206ENST00000533018 DCAF8L1A6NGE4 600 aa24.72■■□□□ 1.55
PCF11-206ENST00000533018 CARD14Q9BXL6 1004 aa24.72■■□□□ 1.55
PCF11-206ENST00000533018 NSD3Q9BZ95 1437 aa24.71■■□□□ 1.55
PCF11-206ENST00000533018 HSP90AB2PQ58FF8 381 aa24.71■■□□□ 1.55
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms