RNA–Protein interactions for RNA: ENST00000531141.1

CD44-233, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 537 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-233ENST00000531141 ZNF777Q9ULD5 760 aaPredicted RBP7.63□□□□□ -1.19
CD44-233ENST00000531141 GFRA3O60609 400 aa7.62□□□□□ -1.19
CD44-233ENST00000531141 FSHRP23945 695 aa7.62□□□□□ -1.19
CD44-233ENST00000531141 CCDC125Q86Z20 511 aa7.62□□□□□ -1.19
CD44-233ENST00000531141 SEPT12Q8IYM1 358 aa7.62□□□□□ -1.19
CD44-233ENST00000531141 CYP4X1Q8N118 509 aa7.62□□□□□ -1.19
CD44-233ENST00000531141 SNIP1Q8TAD8 396 aaKnown RBP7.62□□□□□ -1.19
CD44-233ENST00000531141 ESPNB1AK53 854 aa7.61□□□□□ -1.19
CD44-233ENST00000531141 HDGFL1Q5TGJ6 251 aa7.61□□□□□ -1.19
CD44-233ENST00000531141 KCTD15Q96SI1 283 aaPredicted RBP7.61□□□□□ -1.19
CD44-233ENST00000531141 TOR4AQ9NXH8 423 aa7.61□□□□□ -1.19
CD44-233ENST00000531141 TTC24A2A3L6 582 aaPredicted RBP7.6□□□□□ -1.19
CD44-233ENST00000531141 ARID3CA6NKF2 412 aa7.6□□□□□ -1.19
CD44-233ENST00000531141 ALDH1A1P00352 501 aa7.6□□□□□ -1.19
CD44-233ENST00000531141 NR5A1Q13285 461 aa7.6□□□□□ -1.19
CD44-233ENST00000531141 ARID5BQ14865 1188 aa7.6□□□□□ -1.19
CD44-233ENST00000531141 SLFNL1Q499Z3 407 aa7.6□□□□□ -1.19
CD44-233ENST00000531141 RNF20Q5VTR2 975 aa7.6□□□□□ -1.19
CD44-233ENST00000531141 NFATC2IPQ8NCF5 419 aa7.6□□□□□ -1.19
CD44-233ENST00000531141 CEP126Q9P2H0 1117 aa7.6□□□□□ -1.19
CD44-233ENST00000531141 PDZRN3Q9UPQ7 1066 aa7.6□□□□□ -1.19
CD44-233ENST00000531141 INTS6LQ5JSJ4 861 aaKnown RBP7.59□□□□□ -1.19
CD44-233ENST00000531141 RNF135Q8IUD6 432 aa7.59□□□□□ -1.19
CD44-233ENST00000531141 CCDC97Q96F63 343 aaPredicted RBP7.59□□□□□ -1.19
CD44-233ENST00000531141 UCN2Q96RP3 112 aa7.59□□□□□ -1.19
CD44-233ENST00000531141 WASF2Q9Y6W5 498 aa7.59□□□□□ -1.19
CD44-233ENST00000531141 SUPT5HO00267 1087 aaKnown RBP7.58□□□□□ -1.2
CD44-233ENST00000531141 GIGYF1O75420 1035 aaPredicted RBP7.58□□□□□ -1.2
CD44-233ENST00000531141 DHX9Q08211 1270 aaKnown RBP7.58□□□□□ -1.2
CD44-233ENST00000531141 C1orf115Q9H7X2 142 aa7.58□□□□□ -1.2
CD44-233ENST00000531141 SERPINA10Q9UK55 444 aa7.58□□□□□ -1.2
CD44-233ENST00000531141 NRG2O14511 850 aaPredicted RBP7.57□□□□□ -1.2
CD44-233ENST00000531141 GRM5P41594 1212 aa7.57□□□□□ -1.2
CD44-233ENST00000531141 NNTQ13423 1086 aa7.57□□□□□ -1.2
CD44-233ENST00000531141 CCDC116Q8IYX3 515 aa7.57□□□□□ -1.2
CD44-233ENST00000531141 TRIM52Q96A61 297 aa7.57□□□□□ -1.2
CD44-233ENST00000531141 J3QL48 77 aa7.56□□□□□ -1.2
CD44-233ENST00000531141 SMPD1P17405 629 aa7.56□□□□□ -1.2
CD44-233ENST00000531141 CCDC82Q8N4S0 544 aa7.56□□□□□ -1.2
CD44-233ENST00000531141 CHIC2Q9UKJ5 165 aa7.56□□□□□ -1.2
CD44-233ENST00000531141 PIK3CDO00329 1044 aa7.55□□□□□ -1.2
CD44-233ENST00000531141 ATP9BO43861 1147 aa7.55□□□□□ -1.2
CD44-233ENST00000531141 NR3C2P08235 984 aa7.55□□□□□ -1.2
CD44-233ENST00000531141 RAB15P59190 212 aa7.55□□□□□ -1.2
CD44-233ENST00000531141 MAP7D1Q3KQU3 841 aa7.55□□□□□ -1.2
CD44-233ENST00000531141 PHTF2Q8N3S3 785 aa7.55□□□□□ -1.2
CD44-233ENST00000531141 DOLKQ9UPQ8 538 aa7.55□□□□□ -1.2
CD44-233ENST00000531141 USP17L5A8MUK1 530 aa7.54□□□□□ -1.2
CD44-233ENST00000531141 SKIP12755 728 aa7.54□□□□□ -1.2
CD44-233ENST00000531141 PLPP7Q8NBV4 271 aa7.54□□□□□ -1.2
CD44-233ENST00000531141 CCDC85AQ96PX6 553 aaPredicted RBP7.54□□□□□ -1.2
CD44-233ENST00000531141 PPP1R12CQ9BZL4 782 aa7.54□□□□□ -1.2
CD44-233ENST00000531141 PGPEP1Q9NXJ5 209 aa7.54□□□□□ -1.2
CD44-233ENST00000531141 PCDHB11Q9Y5F2 797 aa7.54□□□□□ -1.2
CD44-233ENST00000531141 EMILIN1Q9Y6C2 1016 aa7.54□□□□□ -1.2
CD44-233ENST00000531141 FAM187AA6NFU0 413 aa7.53□□□□□ -1.2
CD44-233ENST00000531141 PPP1R26Q5T8A7 1209 aaPredicted RBP7.53□□□□□ -1.2
CD44-233ENST00000531141 PLEKHM2Q8IWE5 1019 aa7.53□□□□□ -1.2
CD44-233ENST00000531141 MAFBQ9Y5Q3 323 aaPredicted RBP7.53□□□□□ -1.2
CD44-233ENST00000531141 USP17L3A6NCW0 530 aa7.52□□□□□ -1.21
CD44-233ENST00000531141 USP17L4A6NCW7 530 aa7.52□□□□□ -1.21
CD44-233ENST00000531141 PALM3A6NDB9 673 aaPredicted RBP7.52□□□□□ -1.21
CD44-233ENST00000531141 ERVH48-1M5A8F1 160 aa7.52□□□□□ -1.21
CD44-233ENST00000531141 LZTS3O60299 673 aaPredicted RBP7.52□□□□□ -1.21
CD44-233ENST00000531141 USP17L2Q6R6M4 530 aa7.52□□□□□ -1.21
CD44-233ENST00000531141 TBC1D9Q6ZT07 1266 aa7.52□□□□□ -1.21
CD44-233ENST00000531141 USP17L1Q7RTZ2 530 aa7.52□□□□□ -1.21
CD44-233ENST00000531141 ZNF787Q6DD87 383 aa7.51□□□□□ -1.21
CD44-233ENST00000531141 ZNF784Q8NCA9 323 aaPredicted RBP7.51□□□□□ -1.21
CD44-233ENST00000531141 DGAT1O75907 488 aa7.5□□□□□ -1.21
CD44-233ENST00000531141 AVPP01185 164 aa7.5□□□□□ -1.21
CD44-233ENST00000531141 WDR4P57081 412 aaKnown RBP7.5□□□□□ -1.21
CD44-233ENST00000531141 ERVK-9P63128 1117 aa7.5□□□□□ -1.21
CD44-233ENST00000531141 NCOA4Q13772 614 aa7.5□□□□□ -1.21
CD44-233ENST00000531141 EML3Q32P44 896 aa7.5□□□□□ -1.21
CD44-233ENST00000531141 PKDCCQ504Y2 493 aa7.5□□□□□ -1.21
CD44-233ENST00000531141 CFAP70Q5T0N1 1121 aa7.5□□□□□ -1.21
CD44-233ENST00000531141 HPS1Q92902 700 aa7.5□□□□□ -1.21
CD44-233ENST00000531141 SIRT1Q96EB6 747 aa7.5□□□□□ -1.21
CD44-233ENST00000531141 TFIP11Q9UBB9 837 aaKnown RBP7.5□□□□□ -1.21
CD44-233ENST00000531141 ZIC2O95409 532 aaPredicted RBP7.49□□□□□ -1.21
CD44-233ENST00000531141 MYCP01106 439 aaPredicted RBP7.49□□□□□ -1.21
CD44-233ENST00000531141 TIMP2P16035 220 aa7.49□□□□□ -1.21
CD44-233ENST00000531141 MYT1Q01538 1121 aa7.49□□□□□ -1.21
CD44-233ENST00000531141 OXLD1Q5BKU9 147 aa7.49□□□□□ -1.21
CD44-233ENST00000531141 CC2D2BQ6DHV5 1058 aa7.49□□□□□ -1.21
CD44-233ENST00000531141 ITPKCQ96DU7 683 aa7.49□□□□□ -1.21
CD44-233ENST00000531141 KLF16Q9BXK1 252 aaPredicted RBP7.49□□□□□ -1.21
CD44-233ENST00000531141 TMPRSS4Q9NRS4 437 aa7.49□□□□□ -1.21
CD44-233ENST00000531141 CTC1Q2NKJ3 1217 aa7.48□□□□□ -1.21
CD44-233ENST00000531141 CYLDQ9NQC7 956 aa7.48□□□□□ -1.21
CD44-233ENST00000531141 LILRA1O75019 489 aa7.47□□□□□ -1.21
CD44-233ENST00000531141 LMOD1P29536 600 aaPredicted RBP7.47□□□□□ -1.21
CD44-233ENST00000531141 SCTRP47872 440 aa7.47□□□□□ -1.21
CD44-233ENST00000531141 USP4Q13107 963 aa7.47□□□□□ -1.21
CD44-233ENST00000531141 CYP2U1Q7Z449 544 aa7.47□□□□□ -1.21
CD44-233ENST00000531141 TRIM50Q86XT4 487 aa7.47□□□□□ -1.21
CD44-233ENST00000531141 CDCA7Q9BWT1 371 aaPredicted RBP7.47□□□□□ -1.21
CD44-233ENST00000531141 ESF1Q9H501 851 aaKnown RBP7.47□□□□□ -1.21
CD44-233ENST00000531141 ZFAND3Q9H8U3 227 aa7.47□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms