RNA–Protein interactions for RNA: ENST00000529355.1

CTR9-204, Transcript of CTR9 homolog, Paf1/RNA polymerase II complex component, humanhuman

TSL 2

Gene CTR9, Length 1,146 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTR9-204ENST00000529355 VARSP26640 1264 aaKnown RBP9.49□□□□□ -0.89
CTR9-204ENST00000529355 ARID5BQ14865 1188 aa9.49□□□□□ -0.89
CTR9-204ENST00000529355 ALG2Q9H553 416 aa9.49□□□□□ -0.89
CTR9-204ENST00000529355 J3QL48 77 aa9.47□□□□□ -0.89
CTR9-204ENST00000529355 GIGYF1O75420 1035 aaPredicted RBP9.47□□□□□ -0.89
CTR9-204ENST00000529355 TSGA10IPQ3SY00 556 aa9.47□□□□□ -0.89
CTR9-204ENST00000529355 DZIP3Q86Y13 1208 aaKnown RBP9.47□□□□□ -0.89
CTR9-204ENST00000529355 GLMNQ92990 594 aa9.47□□□□□ -0.89
CTR9-204ENST00000529355 FAM187AA6NFU0 413 aa9.46□□□□□ -0.9
CTR9-204ENST00000529355 PIK3CDO00329 1044 aa9.46□□□□□ -0.9
CTR9-204ENST00000529355 GRM5P41594 1212 aa9.46□□□□□ -0.9
CTR9-204ENST00000529355 FAM174AQ8TBP5 190 aa9.46□□□□□ -0.9
CTR9-204ENST00000529355 RAB15P59190 212 aa9.45□□□□□ -0.9
CTR9-204ENST00000529355 WWC1Q8IX03 1113 aa9.45□□□□□ -0.9
CTR9-204ENST00000529355 TRMT44Q8IYL2 757 aaKnown RBP9.45□□□□□ -0.9
CTR9-204ENST00000529355 CEP126Q9P2H0 1117 aa9.45□□□□□ -0.9
CTR9-204ENST00000529355 FAM181BA6NEQ2 426 aa9.44□□□□□ -0.9
CTR9-204ENST00000529355 ALDH1A1P00352 501 aa9.44□□□□□ -0.9
CTR9-204ENST00000529355 EIF4G2P78344 907 aaKnown RBP eCLIP9.44□□□□□ -0.9
CTR9-204ENST00000529355 SEMA3FQ13275 785 aa9.44□□□□□ -0.9
CTR9-204ENST00000529355 SLC10A4Q96EP9 437 aa9.44□□□□□ -0.9
CTR9-204ENST00000529355 UCN2Q96RP3 112 aa9.44□□□□□ -0.9
CTR9-204ENST00000529355 TOR4AQ9NXH8 423 aa9.44□□□□□ -0.9
CTR9-204ENST00000529355 ERICH6Q7L0X2 663 aa9.43□□□□□ -0.9
CTR9-204ENST00000529355 VASH1Q7L8A9 365 aaPredicted RBP9.43□□□□□ -0.9
CTR9-204ENST00000529355 CDK15Q96Q40 435 aa9.43□□□□□ -0.9
CTR9-204ENST00000529355 AAASQ9NRG9 546 aa9.43□□□□□ -0.9
CTR9-204ENST00000529355 NR3C2P08235 984 aa9.42□□□□□ -0.9
CTR9-204ENST00000529355 NFX1Q12986 1120 aaKnown RBP9.42□□□□□ -0.9
CTR9-204ENST00000529355 CALR3Q96L12 384 aaKnown RBP9.42□□□□□ -0.9
CTR9-204ENST00000529355 KCTD15Q96SI1 283 aaPredicted RBP9.42□□□□□ -0.9
CTR9-204ENST00000529355 SMPD1P17405 629 aa9.41□□□□□ -0.9
CTR9-204ENST00000529355 PHTF2Q8N3S3 785 aa9.41□□□□□ -0.9
CTR9-204ENST00000529355 SNIP1Q8TAD8 396 aaKnown RBP9.41□□□□□ -0.9
CTR9-204ENST00000529355 TTC24A2A3L6 582 aaPredicted RBP9.4□□□□□ -0.9
CTR9-204ENST00000529355 ST8SIA5O15466 376 aa9.4□□□□□ -0.9
CTR9-204ENST00000529355 FSHRP23945 695 aa9.4□□□□□ -0.9
CTR9-204ENST00000529355 INTS6LQ5JSJ4 861 aaKnown RBP9.4□□□□□ -0.9
CTR9-204ENST00000529355 CYP4X1Q8N118 509 aa9.4□□□□□ -0.9
CTR9-204ENST00000529355 CCDC85AQ96PX6 553 aaPredicted RBP9.4□□□□□ -0.9
CTR9-204ENST00000529355 ESPNB1AK53 854 aa9.39□□□□□ -0.91
CTR9-204ENST00000529355 TBC1D9Q6ZT07 1266 aa9.39□□□□□ -0.91
CTR9-204ENST00000529355 TMPRSS4Q9NRS4 437 aa9.39□□□□□ -0.91
CTR9-204ENST00000529355 ADH1CP00326 375 aa9.38□□□□□ -0.91
CTR9-204ENST00000529355 CCDC82Q8N4S0 544 aa9.38□□□□□ -0.91
CTR9-204ENST00000529355 HPS1Q92902 700 aa9.38□□□□□ -0.91
CTR9-204ENST00000529355 CDCA7Q9BWT1 371 aaPredicted RBP9.38□□□□□ -0.91
CTR9-204ENST00000529355 MAP4K5Q9Y4K4 846 aa9.38□□□□□ -0.91
CTR9-204ENST00000529355 SOX11P35716 441 aa9.37□□□□□ -0.91
CTR9-204ENST00000529355 MPNDQ8N594 471 aa9.37□□□□□ -0.91
CTR9-204ENST00000529355 ARID3AQ99856 593 aa9.37□□□□□ -0.91
CTR9-204ENST00000529355 TFIP11Q9UBB9 837 aaKnown RBP9.37□□□□□ -0.91
CTR9-204ENST00000529355 ERVH48-1M5A8F1 160 aa9.36□□□□□ -0.91
CTR9-204ENST00000529355 NNTQ13423 1086 aa9.36□□□□□ -0.91
CTR9-204ENST00000529355 SUZ12Q15022 739 aaKnown RBP9.36□□□□□ -0.91
CTR9-204ENST00000529355 RNF135Q8IUD6 432 aa9.35□□□□□ -0.91
CTR9-204ENST00000529355 CRIPAKQ8N1N5 446 aa9.35□□□□□ -0.91
CTR9-204ENST00000529355 DEPDC4Q8N2C3 294 aa9.35□□□□□ -0.91
CTR9-204ENST00000529355 WASF2Q9Y6W5 498 aa9.35□□□□□ -0.91
CTR9-204ENST00000529355 PALM3A6NDB9 673 aaPredicted RBP9.34□□□□□ -0.91
CTR9-204ENST00000529355 C11orf95C9JLR9 678 aaPredicted RBP9.34□□□□□ -0.91
CTR9-204ENST00000529355 SKIP12755 728 aa9.34□□□□□ -0.91
CTR9-204ENST00000529355 SCTRP47872 440 aa9.34□□□□□ -0.91
CTR9-204ENST00000529355 NBPF20Q3BBV1 942 aa9.34□□□□□ -0.91
CTR9-204ENST00000529355 SLFNL1Q499Z3 407 aa9.34□□□□□ -0.91
CTR9-204ENST00000529355 PPP1R26Q5T8A7 1209 aaPredicted RBP9.34□□□□□ -0.91
CTR9-204ENST00000529355 KLF16Q9BXK1 252 aaPredicted RBP9.34□□□□□ -0.91
CTR9-204ENST00000529355 RFX1P22670 979 aa9.33□□□□□ -0.92
CTR9-204ENST00000529355 MCCD1P59942 119 aaPredicted RBP9.33□□□□□ -0.92
CTR9-204ENST00000529355 CFAP70Q5T0N1 1121 aa9.33□□□□□ -0.92
CTR9-204ENST00000529355 PPP1R12CQ9BZL4 782 aa9.33□□□□□ -0.92
CTR9-204ENST00000529355 PCDHB11Q9Y5F2 797 aa9.33□□□□□ -0.92
CTR9-204ENST00000529355 ADD1P35611 737 aaKnown RBP9.32□□□□□ -0.92
CTR9-204ENST00000529355 NR5A1Q13285 461 aa9.32□□□□□ -0.92
CTR9-204ENST00000529355 CCDC116Q8IYX3 515 aa9.32□□□□□ -0.92
CTR9-204ENST00000529355 ITPKCQ96DU7 683 aa9.32□□□□□ -0.92
CTR9-204ENST00000529355 ZFAND3Q9H8U3 227 aa9.32□□□□□ -0.92
CTR9-204ENST00000529355 CHIC2Q9UKJ5 165 aa9.32□□□□□ -0.92
CTR9-204ENST00000529355 CDV3Q9UKY7 258 aaKnown RBP9.32□□□□□ -0.92
CTR9-204ENST00000529355 CBLBQ13191 982 aa9.31□□□□□ -0.92
CTR9-204ENST00000529355 PLPP7Q8NBV4 271 aa9.31□□□□□ -0.92
CTR9-204ENST00000529355 ZNF784Q8NCA9 323 aaPredicted RBP9.31□□□□□ -0.92
CTR9-204ENST00000529355 CYLDQ9NQC7 956 aa9.31□□□□□ -0.92
CTR9-204ENST00000529355 CDCA8Q53HL2 280 aa9.3□□□□□ -0.92
CTR9-204ENST00000529355 OXLD1Q5BKU9 147 aa9.3□□□□□ -0.92
CTR9-204ENST00000529355 USP17L5A8MUK1 530 aa9.29□□□□□ -0.92
CTR9-204ENST00000529355 ATP9BO43861 1147 aa9.29□□□□□ -0.92
CTR9-204ENST00000529355 LILRA1O75019 489 aa9.29□□□□□ -0.92
CTR9-204ENST00000529355 TIMP2P16035 220 aa9.29□□□□□ -0.92
CTR9-204ENST00000529355 LMOD1P29536 600 aaPredicted RBP9.29□□□□□ -0.92
CTR9-204ENST00000529355 WDR4P57081 412 aaKnown RBP9.29□□□□□ -0.92
CTR9-204ENST00000529355 GMPR2Q9P2T1 348 aaKnown RBP9.29□□□□□ -0.92
CTR9-204ENST00000529355 DOLKQ9UPQ8 538 aa9.29□□□□□ -0.92
CTR9-204ENST00000529355 MAFBQ9Y5Q3 323 aaPredicted RBP9.29□□□□□ -0.92
CTR9-204ENST00000529355 ZIC2O95409 532 aaPredicted RBP9.28□□□□□ -0.92
CTR9-204ENST00000529355 STAU1O95793 577 aaKnown RBP9.28□□□□□ -0.92
CTR9-204ENST00000529355 NCOA4Q13772 614 aa9.28□□□□□ -0.92
CTR9-204ENST00000529355 SEPT12Q8IYM1 358 aa9.28□□□□□ -0.92
CTR9-204ENST00000529355 RNF20Q5VTR2 975 aa9.27□□□□□ -0.93
CTR9-204ENST00000529355 CCDC97Q96F63 343 aaPredicted RBP9.27□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms