RNA–Protein interactions for RNA: ENST00000528922.1

CD44-230, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 1,319 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-230ENST00000528922 SNIP1Q8TAD8 396 aaKnown RBP9.44□□□□□ -0.9
CD44-230ENST00000528922 KCTD15Q96SI1 283 aaPredicted RBP9.44□□□□□ -0.9
CD44-230ENST00000528922 TOR4AQ9NXH8 423 aa9.44□□□□□ -0.9
CD44-230ENST00000528922 ESPNB1AK53 854 aa9.43□□□□□ -0.9
CD44-230ENST00000528922 PHTF2Q8N3S3 785 aa9.43□□□□□ -0.9
CD44-230ENST00000528922 ZNF592Q92610 1267 aa9.43□□□□□ -0.9
CD44-230ENST00000528922 UCN2Q96RP3 112 aa9.43□□□□□ -0.9
CD44-230ENST00000528922 CDV3Q9UKY7 258 aaKnown RBP9.43□□□□□ -0.9
CD44-230ENST00000528922 PIK3CDO00329 1044 aa9.42□□□□□ -0.9
CD44-230ENST00000528922 ALDH1A1P00352 501 aa9.42□□□□□ -0.9
CD44-230ENST00000528922 CYP4X1Q8N118 509 aa9.42□□□□□ -0.9
CD44-230ENST00000528922 TTC24A2A3L6 582 aaPredicted RBP9.41□□□□□ -0.9
CD44-230ENST00000528922 J3QL48 77 aa9.41□□□□□ -0.9
CD44-230ENST00000528922 ADH1CP00326 375 aa9.41□□□□□ -0.9
CD44-230ENST00000528922 NBPF20Q3BBV1 942 aa9.41□□□□□ -0.9
CD44-230ENST00000528922 TSGA10IPQ3SY00 556 aa9.4□□□□□ -0.9
CD44-230ENST00000528922 INTS6LQ5JSJ4 861 aaKnown RBP9.4□□□□□ -0.9
CD44-230ENST00000528922 PDZRN3Q9UPQ7 1066 aa9.4□□□□□ -0.9
CD44-230ENST00000528922 SMPD1P17405 629 aa9.39□□□□□ -0.91
CD44-230ENST00000528922 FSHRP23945 695 aa9.39□□□□□ -0.91
CD44-230ENST00000528922 CCDC82Q8N4S0 544 aa9.39□□□□□ -0.91
CD44-230ENST00000528922 NR3C2P08235 984 aa9.38□□□□□ -0.91
CD44-230ENST00000528922 RAB15P59190 212 aa9.38□□□□□ -0.91
CD44-230ENST00000528922 SLFNL1Q499Z3 407 aa9.38□□□□□ -0.91
CD44-230ENST00000528922 TBC1D9Q6ZT07 1266 aa9.38□□□□□ -0.91
CD44-230ENST00000528922 RNF135Q8IUD6 432 aa9.38□□□□□ -0.91
CD44-230ENST00000528922 CCDC85AQ96PX6 553 aaPredicted RBP9.38□□□□□ -0.91
CD44-230ENST00000528922 CHIC2Q9UKJ5 165 aa9.38□□□□□ -0.91
CD44-230ENST00000528922 NR5A1Q13285 461 aa9.37□□□□□ -0.91
CD44-230ENST00000528922 PPP1R12CQ9BZL4 782 aa9.37□□□□□ -0.91
CD44-230ENST00000528922 TFIP11Q9UBB9 837 aaKnown RBP9.37□□□□□ -0.91
CD44-230ENST00000528922 ERVH48-1M5A8F1 160 aa9.36□□□□□ -0.91
CD44-230ENST00000528922 SEPT12Q8IYM1 358 aa9.36□□□□□ -0.91
CD44-230ENST00000528922 WASF2Q9Y6W5 498 aa9.36□□□□□ -0.91
CD44-230ENST00000528922 PALM3A6NDB9 673 aaPredicted RBP9.35□□□□□ -0.91
CD44-230ENST00000528922 SKIP12755 728 aa9.35□□□□□ -0.91
CD44-230ENST00000528922 NNTQ13423 1086 aa9.35□□□□□ -0.91
CD44-230ENST00000528922 RNF20Q5VTR2 975 aa9.35□□□□□ -0.91
CD44-230ENST00000528922 NFATC2IPQ8NCF5 419 aa9.35□□□□□ -0.91
CD44-230ENST00000528922 SERPINA10Q9UK55 444 aa9.35□□□□□ -0.91
CD44-230ENST00000528922 GFRA3O60609 400 aa9.34□□□□□ -0.91
CD44-230ENST00000528922 CCDC116Q8IYX3 515 aa9.34□□□□□ -0.91
CD44-230ENST00000528922 PLPP7Q8NBV4 271 aa9.34□□□□□ -0.91
CD44-230ENST00000528922 CCDC97Q96F63 343 aaPredicted RBP9.34□□□□□ -0.91
CD44-230ENST00000528922 CDCA7Q9BWT1 371 aaPredicted RBP9.34□□□□□ -0.91
CD44-230ENST00000528922 ATP9BO43861 1147 aa9.33□□□□□ -0.92
CD44-230ENST00000528922 PPP1R26Q5T8A7 1209 aaPredicted RBP9.33□□□□□ -0.92
CD44-230ENST00000528922 TRAF7Q6Q0C0 670 aa9.33□□□□□ -0.92
CD44-230ENST00000528922 HPS1Q92902 700 aa9.33□□□□□ -0.92
CD44-230ENST00000528922 ARID3AQ99856 593 aa9.33□□□□□ -0.92
CD44-230ENST00000528922 KLF16Q9BXK1 252 aaPredicted RBP9.33□□□□□ -0.92
CD44-230ENST00000528922 TMPRSS4Q9NRS4 437 aa9.33□□□□□ -0.92
CD44-230ENST00000528922 PCDHB11Q9Y5F2 797 aa9.33□□□□□ -0.92
CD44-230ENST00000528922 CFAP70Q5T0N1 1121 aa9.32□□□□□ -0.92
CD44-230ENST00000528922 MAFBQ9Y5Q3 323 aaPredicted RBP9.32□□□□□ -0.92
CD44-230ENST00000528922 USP17L5A8MUK1 530 aa9.31□□□□□ -0.92
CD44-230ENST00000528922 DHX9Q08211 1270 aaKnown RBP9.31□□□□□ -0.92
CD44-230ENST00000528922 CCDC125Q86Z20 511 aa9.31□□□□□ -0.92
CD44-230ENST00000528922 DEPDC4Q8N2C3 294 aa9.31□□□□□ -0.92
CD44-230ENST00000528922 DOLKQ9UPQ8 538 aa9.31□□□□□ -0.92
CD44-230ENST00000528922 FAM187AA6NFU0 413 aa9.31□□□□□ -0.92
CD44-230ENST00000528922 LMOD1P29536 600 aaPredicted RBP9.31□□□□□ -0.92
CD44-230ENST00000528922 MAP7D1Q3KQU3 841 aa9.31□□□□□ -0.92
CD44-230ENST00000528922 USP17L3A6NCW0 530 aa9.3□□□□□ -0.92
CD44-230ENST00000528922 USP17L4A6NCW7 530 aa9.3□□□□□ -0.92
CD44-230ENST00000528922 NRG2O14511 850 aaPredicted RBP9.3□□□□□ -0.92
CD44-230ENST00000528922 LILRA1O75019 489 aa9.3□□□□□ -0.92
CD44-230ENST00000528922 RFX1P22670 979 aa9.3□□□□□ -0.92
CD44-230ENST00000528922 SCTRP47872 440 aa9.3□□□□□ -0.92
CD44-230ENST00000528922 USP17L2Q6R6M4 530 aa9.3□□□□□ -0.92
CD44-230ENST00000528922 USP17L1Q7RTZ2 530 aa9.3□□□□□ -0.92
CD44-230ENST00000528922 ZNF784Q8NCA9 323 aaPredicted RBP9.3□□□□□ -0.92
CD44-230ENST00000528922 ITPKCQ96DU7 683 aa9.3□□□□□ -0.92
CD44-230ENST00000528922 EMILIN1Q9Y6C2 1016 aa9.3□□□□□ -0.92
CD44-230ENST00000528922 WDR4P57081 412 aaKnown RBP9.29□□□□□ -0.92
CD44-230ENST00000528922 NCOA4Q13772 614 aa9.29□□□□□ -0.92
CD44-230ENST00000528922 OXLD1Q5BKU9 147 aa9.29□□□□□ -0.92
CD44-230ENST00000528922 PLEKHM2Q8IWE5 1019 aa9.29□□□□□ -0.92
CD44-230ENST00000528922 ZFAND3Q9H8U3 227 aa9.29□□□□□ -0.92
CD44-230ENST00000528922 CYLDQ9NQC7 956 aa9.29□□□□□ -0.92
CD44-230ENST00000528922 TIMP2P16035 220 aa9.28□□□□□ -0.92
CD44-230ENST00000528922 ADD1P35611 737 aaKnown RBP9.28□□□□□ -0.92
CD44-230ENST00000528922 ERVK-9P63128 1117 aa9.28□□□□□ -0.92
CD44-230ENST00000528922 ZIC2O95409 532 aaPredicted RBP9.27□□□□□ -0.93
CD44-230ENST00000528922 SRPK2P78362 688 aaKnown RBP9.27□□□□□ -0.93
CD44-230ENST00000528922 PGPEP1Q9NXJ5 209 aa9.27□□□□□ -0.93
CD44-230ENST00000528922 LZTS3O60299 673 aaPredicted RBP9.26□□□□□ -0.93
CD44-230ENST00000528922 DGAT1O75907 488 aa9.26□□□□□ -0.93
CD44-230ENST00000528922 AVPP01185 164 aa9.26□□□□□ -0.93
CD44-230ENST00000528922 MYT1Q01538 1121 aa9.26□□□□□ -0.93
CD44-230ENST00000528922 KANK4Q5T7N3 995 aaPredicted RBP9.26□□□□□ -0.93
CD44-230ENST00000528922 CC2D2BQ6DHV5 1058 aa9.26□□□□□ -0.93
CD44-230ENST00000528922 IRX2Q9BZI1 471 aaPredicted RBP9.26□□□□□ -0.93
CD44-230ENST00000528922 USP4Q13107 963 aa9.25□□□□□ -0.93
CD44-230ENST00000528922 CBLBQ13191 982 aa9.25□□□□□ -0.93
CD44-230ENST00000528922 LAPTM4AQ15012 233 aa9.25□□□□□ -0.93
CD44-230ENST00000528922 EML3Q32P44 896 aa9.25□□□□□ -0.93
CD44-230ENST00000528922 CDCA8Q53HL2 280 aa9.25□□□□□ -0.93
CD44-230ENST00000528922 OSBPL3Q9H4L5 887 aa9.25□□□□□ -0.93
CD44-230ENST00000528922 MKRN1Q9UHC7 482 aaKnown RBP9.25□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 9.7 ms