RNA–Protein interactions for RNA: ENST00000525078.1

USP47-204, Transcript of ubiquitin specific peptidase 47, humanhuman

TSL 1 (best)

Gene USP47, Length 978 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-204ENST00000525078 LZTS3O60299 673 aaPredicted RBP7.87□□□□□ -1.15
USP47-204ENST00000525078 SLFNL1Q499Z3 407 aa7.87□□□□□ -1.15
USP47-204ENST00000525078 PACS2Q86VP3 889 aa7.87□□□□□ -1.15
USP47-204ENST00000525078 C1orf216Q8TAB5 229 aa7.87□□□□□ -1.15
USP47-204ENST00000525078 FAM174AQ8TBP5 190 aa7.87□□□□□ -1.15
USP47-204ENST00000525078 ASB16Q96NS5 453 aa7.87□□□□□ -1.15
USP47-204ENST00000525078 SCAMP3O14828 347 aaKnown RBP7.86□□□□□ -1.15
USP47-204ENST00000525078 PRMT3O60678 531 aa7.86□□□□□ -1.15
USP47-204ENST00000525078 C9orf131Q5VYM1 1079 aa7.86□□□□□ -1.15
USP47-204ENST00000525078 ZNF594Q96JF6 807 aaPredicted RBP7.86□□□□□ -1.15
USP47-204ENST00000525078 BACH2Q9BYV9 841 aa7.86□□□□□ -1.15
USP47-204ENST00000525078 TANGO6Q9C0B7 1094 aa7.86□□□□□ -1.15
USP47-204ENST00000525078 DCTN4Q9UJW0 460 aa7.86□□□□□ -1.15
USP47-204ENST00000525078 C3orf80F5H4A9 247 aa7.85□□□□□ -1.15
USP47-204ENST00000525078 ICMTO60725 284 aa7.85□□□□□ -1.15
USP47-204ENST00000525078 COL9A1P20849 921 aa7.85□□□□□ -1.15
USP47-204ENST00000525078 DHX37Q8IY37 1157 aaKnown RBP7.85□□□□□ -1.15
USP47-204ENST00000525078 OGFOD1Q8N543 542 aa7.85□□□□□ -1.15
USP47-204ENST00000525078 HDLBPQ00341 1268 aaKnown RBP7.84□□□□□ -1.15
USP47-204ENST00000525078 PPP4R3BQ5MIZ7 849 aa7.84□□□□□ -1.15
USP47-204ENST00000525078 RNF135Q8IUD6 432 aa7.84□□□□□ -1.15
USP47-204ENST00000525078 SYMPKQ92797 1274 aaKnown RBP7.84□□□□□ -1.15
USP47-204ENST00000525078 KCTD12Q96CX2 325 aaKnown RBP7.84□□□□□ -1.15
USP47-204ENST00000525078 DNAJC2Q99543 621 aaKnown RBP7.84□□□□□ -1.15
USP47-204ENST00000525078 RBM19Q9Y4C8 960 aaKnown RBP7.84□□□□□ -1.15
USP47-204ENST00000525078 SMAPO00193 183 aa7.83□□□□□ -1.16
USP47-204ENST00000525078 COL19A1Q14993 1142 aa7.83□□□□□ -1.16
USP47-204ENST00000525078 EML3Q32P44 896 aa7.83□□□□□ -1.16
USP47-204ENST00000525078 NOP9Q86U38 636 aaKnown RBP7.83□□□□□ -1.16
USP47-204ENST00000525078 PIK3R5Q8WYR1 880 aa7.83□□□□□ -1.16
USP47-204ENST00000525078 TMA7Q9Y2S6 64 aaKnown RBP7.83□□□□□ -1.16
USP47-204ENST00000525078 C21orf2O43822 256 aa7.82□□□□□ -1.16
USP47-204ENST00000525078 KCNH2Q12809 1159 aa7.82□□□□□ -1.16
USP47-204ENST00000525078 TRIM50Q86XT4 487 aa7.82□□□□□ -1.16
USP47-204ENST00000525078 PLPP7Q8NBV4 271 aa7.82□□□□□ -1.16
USP47-204ENST00000525078 PRIMPOLQ96LW4 560 aa7.82□□□□□ -1.16
USP47-204ENST00000525078 DNAAF2Q9NVR5 837 aaKnown RBP7.82□□□□□ -1.16
USP47-204ENST00000525078 TRIM6-TRIM34B2RNG4 842 aa7.81□□□□□ -1.16
USP47-204ENST00000525078 SLC10A3P09131 477 aa7.81□□□□□ -1.16
USP47-204ENST00000525078 ATP1A2P50993 1020 aa7.81□□□□□ -1.16
USP47-204ENST00000525078 ZNF592Q92610 1267 aa7.81□□□□□ -1.16
USP47-204ENST00000525078 CXXC1Q9P0U4 656 aaPredicted RBP7.81□□□□□ -1.16
USP47-204ENST00000525078 FKBPLQ9UIM3 349 aa7.81□□□□□ -1.16
USP47-204ENST00000525078 BRPF3Q9ULD4 1205 aa7.81□□□□□ -1.16
USP47-204ENST00000525078 VPS9D1Q9Y2B5 631 aa7.81□□□□□ -1.16
USP47-204ENST00000525078 ZC3H4Q9UPT8 1303 aaKnown RBP7.8□□□□□ -1.16
USP47-204ENST00000525078 PPP1R3GB7ZBB8 358 aa7.8□□□□□ -1.16
USP47-204ENST00000525078 ZNF662Q6ZS27 426 aa7.8□□□□□ -1.16
USP47-204ENST00000525078 NOL8Q76FK4 1167 aaKnown RBP7.8□□□□□ -1.16
USP47-204ENST00000525078 TAS1R3Q7RTX0 852 aa7.8□□□□□ -1.16
USP47-204ENST00000525078 GTF3C2Q8WUA4 911 aaPredicted RBP7.8□□□□□ -1.16
USP47-204ENST00000525078 KCNK17Q96T54 332 aa7.8□□□□□ -1.16
USP47-204ENST00000525078 CEP126Q9P2H0 1117 aa7.8□□□□□ -1.16
USP47-204ENST00000525078 ATP2B1P20020 1258 aa7.79□□□□□ -1.16
USP47-204ENST00000525078 SLC4A3P48751 1232 aa7.79□□□□□ -1.16
USP47-204ENST00000525078 CLDN10P78369 228 aa7.79□□□□□ -1.16
USP47-204ENST00000525078 FUT2Q10981 343 aa7.79□□□□□ -1.16
USP47-204ENST00000525078 TMEM87AQ8NBN3 555 aa7.79□□□□□ -1.16
USP47-204ENST00000525078 STAC3Q96MF2 364 aa7.79□□□□□ -1.16
USP47-204ENST00000525078 LNPKQ9C0E8 428 aa7.79□□□□□ -1.16
USP47-204ENST00000525078 PRKAG2Q9UGJ0 569 aa7.79□□□□□ -1.16
USP47-204ENST00000525078 BRD2P25440 801 aaKnown RBP7.78□□□□□ -1.16
USP47-204ENST00000525078 GTF2F1P35269 517 aaKnown RBP eCLIP7.78□□□□□ -1.16
USP47-204ENST00000525078 XPCQ01831 940 aaPredicted RBP7.78□□□□□ -1.16
USP47-204ENST00000525078 FKBP4Q02790 459 aaKnown RBP eCLIP7.78□□□□□ -1.16
USP47-204ENST00000525078 MRPL58Q14197 206 aaKnown RBP7.78□□□□□ -1.16
USP47-204ENST00000525078 RETREG3Q86VR2 466 aa7.78□□□□□ -1.16
USP47-204ENST00000525078 NT5DC4Q86YG4 428 aa7.78□□□□□ -1.16
USP47-204ENST00000525078 RGL4Q8IZJ4 473 aa7.78□□□□□ -1.16
USP47-204ENST00000525078 DHX38Q92620 1227 aaKnown RBP7.78□□□□□ -1.16
USP47-204ENST00000525078 MRS2Q9HD23 443 aa7.78□□□□□ -1.16
USP47-204ENST00000525078 CUEDC1Q9NWM3 386 aaPredicted RBP7.78□□□□□ -1.16
USP47-204ENST00000525078 NOD1Q9Y239 953 aa7.78□□□□□ -1.16
USP47-204ENST00000525078 PCDHB9Q9Y5E1 797 aa7.78□□□□□ -1.16
USP47-204ENST00000525078 FMNL1O95466 1100 aaPredicted RBP7.77□□□□□ -1.17
USP47-204ENST00000525078 PTPREP23469 700 aa7.77□□□□□ -1.17
USP47-204ENST00000525078 SEC13P55735 322 aa7.77□□□□□ -1.17
USP47-204ENST00000525078 SF3B2Q13435 895 aaKnown RBP7.77□□□□□ -1.17
USP47-204ENST00000525078 MAP7D1Q3KQU3 841 aa7.77□□□□□ -1.17
USP47-204ENST00000525078 LARGE2Q8N3Y3 721 aa7.77□□□□□ -1.17
USP47-204ENST00000525078 CCSER2Q9H7U1 834 aa7.77□□□□□ -1.17
USP47-204ENST00000525078 CAPN10Q9HC96 672 aa7.77□□□□□ -1.17
USP47-204ENST00000525078 MARCH6O60337 910 aa7.76□□□□□ -1.17
USP47-204ENST00000525078 P4HBP07237 508 aaKnown RBP7.76□□□□□ -1.17
USP47-204ENST00000525078 ITGAEP38570 1179 aa7.76□□□□□ -1.17
USP47-204ENST00000525078 ATP6V1AP38606 617 aa7.76□□□□□ -1.17
USP47-204ENST00000525078 HDGFP51858 240 aaKnown RBP7.76□□□□□ -1.17
USP47-204ENST00000525078 OCLNQ16625 522 aa7.76□□□□□ -1.17
USP47-204ENST00000525078 SWT1Q5T5J6 900 aaKnown RBP7.76□□□□□ -1.17
USP47-204ENST00000525078 DESI1Q6ICB0 168 aa7.76□□□□□ -1.17
USP47-204ENST00000525078 LYPD8Q6UX82 237 aa7.76□□□□□ -1.17
USP47-204ENST00000525078 MKNK1Q9BUB5 465 aa7.76□□□□□ -1.17
USP47-204ENST00000525078 SLC4A5Q9BY07 1137 aa7.76□□□□□ -1.17
USP47-204ENST00000525078 IQSEC3Q9UPP2 1182 aaPredicted RBP7.76□□□□□ -1.17
USP47-204ENST00000525078 DNMT3AQ9Y6K1 912 aaPredicted RBP7.76□□□□□ -1.17
USP47-204ENST00000525078 TLDC2A0PJX2 215 aa7.75□□□□□ -1.17
USP47-204ENST00000525078 BHMG1C9JSJ3 638 aaPredicted RBP7.75□□□□□ -1.17
USP47-204ENST00000525078 PTPN5P54829 565 aa7.75□□□□□ -1.17
USP47-204ENST00000525078 MCCD1P59942 119 aaPredicted RBP7.75□□□□□ -1.17
USP47-204ENST00000525078 ARHGAP4P98171 946 aa7.75□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms