RNA–Protein interactions for RNA: ENST00000523588.1

CPNE3-207, Transcript of copine 3, humanhuman

TSL 2

Gene CPNE3, Length 426 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-207ENST00000523588 TIMELESSQ9UNS1 1208 aa11.26□□□□□ -0.61
CPNE3-207ENST00000523588 ESPNB1AK53 854 aa11.25□□□□□ -0.61
CPNE3-207ENST00000523588 SOX11P35716 441 aa11.25□□□□□ -0.61
CPNE3-207ENST00000523588 ADAMTS19Q8TE59 1207 aa11.25□□□□□ -0.61
CPNE3-207ENST00000523588 NR5A1Q13285 461 aa11.24□□□□□ -0.61
CPNE3-207ENST00000523588 LAPTM4AQ15012 233 aa11.24□□□□□ -0.61
CPNE3-207ENST00000523588 GIGYF1O75420 1035 aaPredicted RBP11.23□□□□□ -0.61
CPNE3-207ENST00000523588 NR3C2P08235 984 aa11.23□□□□□ -0.61
CPNE3-207ENST00000523588 FSHRP23945 695 aa11.23□□□□□ -0.61
CPNE3-207ENST00000523588 NBPF20Q3BBV1 942 aa11.23□□□□□ -0.61
CPNE3-207ENST00000523588 ERICH6Q7L0X2 663 aa11.23□□□□□ -0.61
CPNE3-207ENST00000523588 ZNF592Q92610 1267 aa11.23□□□□□ -0.61
CPNE3-207ENST00000523588 CEP126Q9P2H0 1117 aa11.23□□□□□ -0.61
CPNE3-207ENST00000523588 WASF2Q9Y6W5 498 aa11.23□□□□□ -0.61
CPNE3-207ENST00000523588 FAM187AA6NFU0 413 aa11.22□□□□□ -0.61
CPNE3-207ENST00000523588 INTS6LQ5JSJ4 861 aaKnown RBP11.22□□□□□ -0.61
CPNE3-207ENST00000523588 HPS1Q92902 700 aa11.22□□□□□ -0.61
CPNE3-207ENST00000523588 SEMA3FQ13275 785 aa11.21□□□□□ -0.61
CPNE3-207ENST00000523588 NNTQ13423 1086 aa11.21□□□□□ -0.61
CPNE3-207ENST00000523588 DGAT1O75907 488 aa11.2□□□□□ -0.62
CPNE3-207ENST00000523588 HDGFL1Q5TGJ6 251 aa11.2□□□□□ -0.62
CPNE3-207ENST00000523588 AVPP01185 164 aa11.19□□□□□ -0.62
CPNE3-207ENST00000523588 PHTF2Q8N3S3 785 aa11.19□□□□□ -0.62
CPNE3-207ENST00000523588 KLF16Q9BXK1 252 aaPredicted RBP11.19□□□□□ -0.62
CPNE3-207ENST00000523588 ZNF777Q9ULD5 760 aaPredicted RBP11.19□□□□□ -0.62
CPNE3-207ENST00000523588 SEPT12Q8IYM1 358 aa11.18□□□□□ -0.62
CPNE3-207ENST00000523588 GLMNQ92990 594 aa11.18□□□□□ -0.62
CPNE3-207ENST00000523588 PKDCCQ504Y2 493 aa11.17□□□□□ -0.62
CPNE3-207ENST00000523588 CCDC116Q8IYX3 515 aa11.17□□□□□ -0.62
CPNE3-207ENST00000523588 RAB15P59190 212 aa11.16□□□□□ -0.62
CPNE3-207ENST00000523588 ERVH48-1M5A8F1 160 aa11.15□□□□□ -0.62
CPNE3-207ENST00000523588 PPP1R26Q5T8A7 1209 aaPredicted RBP11.15□□□□□ -0.62
CPNE3-207ENST00000523588 RNF20Q5VTR2 975 aa11.15□□□□□ -0.62
CPNE3-207ENST00000523588 CHIC2Q9UKJ5 165 aa11.15□□□□□ -0.62
CPNE3-207ENST00000523588 PIK3CDO00329 1044 aa11.14□□□□□ -0.63
CPNE3-207ENST00000523588 TIMP2P16035 220 aa11.14□□□□□ -0.63
CPNE3-207ENST00000523588 CCDC85AQ96PX6 553 aaPredicted RBP11.14□□□□□ -0.63
CPNE3-207ENST00000523588 MYT1Q01538 1121 aa11.13□□□□□ -0.63
CPNE3-207ENST00000523588 DHX9Q08211 1270 aaKnown RBP11.13□□□□□ -0.63
CPNE3-207ENST00000523588 TSGA10IPQ3SY00 556 aa11.13□□□□□ -0.63
CPNE3-207ENST00000523588 SLFNL1Q499Z3 407 aa11.13□□□□□ -0.63
CPNE3-207ENST00000523588 CCDC125Q86Z20 511 aa11.13□□□□□ -0.63
CPNE3-207ENST00000523588 ITPKCQ96DU7 683 aa11.13□□□□□ -0.63
CPNE3-207ENST00000523588 UCN2Q96RP3 112 aa11.13□□□□□ -0.63
CPNE3-207ENST00000523588 TMPRSS4Q9NRS4 437 aa11.13□□□□□ -0.63
CPNE3-207ENST00000523588 EMILIN1Q9Y6C2 1016 aa11.13□□□□□ -0.63
CPNE3-207ENST00000523588 SMCPP49901 116 aaPredicted RBP11.12□□□□□ -0.63
CPNE3-207ENST00000523588 WDR4P57081 412 aaKnown RBP11.12□□□□□ -0.63
CPNE3-207ENST00000523588 CALR3Q96L12 384 aaKnown RBP11.12□□□□□ -0.63
CPNE3-207ENST00000523588 ZFAND3Q9H8U3 227 aa11.12□□□□□ -0.63
CPNE3-207ENST00000523588 LCE2BO14633 110 aa11.11□□□□□ -0.63
CPNE3-207ENST00000523588 ZIC2O95409 532 aaPredicted RBP11.11□□□□□ -0.63
CPNE3-207ENST00000523588 RNF135Q8IUD6 432 aa11.11□□□□□ -0.63
CPNE3-207ENST00000523588 CRIPAKQ8N1N5 446 aa11.11□□□□□ -0.63
CPNE3-207ENST00000523588 ARID3CA6NKF2 412 aa11.09□□□□□ -0.63
CPNE3-207ENST00000523588 LILRA1O75019 489 aa11.09□□□□□ -0.63
CPNE3-207ENST00000523588 CTC1Q2NKJ3 1217 aa11.09□□□□□ -0.63
CPNE3-207ENST00000523588 TRAF7Q6Q0C0 670 aa11.09□□□□□ -0.63
CPNE3-207ENST00000523588 Q6ZNB5 142 aa11.09□□□□□ -0.63
CPNE3-207ENST00000523588 ZNF784Q8NCA9 323 aaPredicted RBP11.09□□□□□ -0.63
CPNE3-207ENST00000523588 NFATC2IPQ8NCF5 419 aa11.09□□□□□ -0.63
CPNE3-207ENST00000523588 CDCA7Q9BWT1 371 aaPredicted RBP11.09□□□□□ -0.63
CPNE3-207ENST00000523588 PGPEP1Q9NXJ5 209 aa11.09□□□□□ -0.63
CPNE3-207ENST00000523588 PCDHB11Q9Y5F2 797 aa11.09□□□□□ -0.63
CPNE3-207ENST00000523588 CAPN5O15484 640 aaPredicted RBP11.08□□□□□ -0.64
CPNE3-207ENST00000523588 C1orf115Q9H7X2 142 aa11.08□□□□□ -0.64
CPNE3-207ENST00000523588 AAASQ9NRG9 546 aa11.08□□□□□ -0.64
CPNE3-207ENST00000523588 ST8SIA5O15466 376 aa11.07□□□□□ -0.64
CPNE3-207ENST00000523588 TBC1D9Q6ZT07 1266 aa11.07□□□□□ -0.64
CPNE3-207ENST00000523588 PLPP7Q8NBV4 271 aa11.07□□□□□ -0.64
CPNE3-207ENST00000523588 AXIN1O15169 862 aa11.06□□□□□ -0.64
CPNE3-207ENST00000523588 SCTRP47872 440 aa11.06□□□□□ -0.64
CPNE3-207ENST00000523588 ERVK-9P63128 1117 aa11.06□□□□□ -0.64
CPNE3-207ENST00000523588 CBLBQ13191 982 aa11.06□□□□□ -0.64
CPNE3-207ENST00000523588 DOLKQ9UPQ8 538 aa11.06□□□□□ -0.64
CPNE3-207ENST00000523588 SKIP12755 728 aa11.05□□□□□ -0.64
CPNE3-207ENST00000523588 ADD1P35611 737 aaKnown RBP11.05□□□□□ -0.64
CPNE3-207ENST00000523588 MAP7D1Q3KQU3 841 aa11.05□□□□□ -0.64
CPNE3-207ENST00000523588 Q6ZVU0 165 aa11.05□□□□□ -0.64
CPNE3-207ENST00000523588 CYLDQ9NQC7 956 aa11.05□□□□□ -0.64
CPNE3-207ENST00000523588 ATP9BO43861 1147 aa11.04□□□□□ -0.64
CPNE3-207ENST00000523588 DACH1Q9UI36 760 aa11.04□□□□□ -0.64
CPNE3-207ENST00000523588 CC2D2BQ6DHV5 1058 aa11.03□□□□□ -0.64
CPNE3-207ENST00000523588 MEIOBQ8N635 442 aa11.03□□□□□ -0.64
CPNE3-207ENST00000523588 PPP1R12CQ9BZL4 782 aa11.03□□□□□ -0.64
CPNE3-207ENST00000523588 TFIP11Q9UBB9 837 aaKnown RBP11.03□□□□□ -0.64
CPNE3-207ENST00000523588 PALM3A6NDB9 673 aaPredicted RBP11.02□□□□□ -0.65
CPNE3-207ENST00000523588 USP17L5A8MUK1 530 aa11.02□□□□□ -0.65
CPNE3-207ENST00000523588 SUPT5HO00267 1087 aaKnown RBP11.02□□□□□ -0.65
CPNE3-207ENST00000523588 OXLD1Q5BKU9 147 aa11.01□□□□□ -0.65
CPNE3-207ENST00000523588 KDF1Q8NAX2 398 aaPredicted RBP11.01□□□□□ -0.65
CPNE3-207ENST00000523588 TRIM46Q7Z4K8 759 aa11□□□□□ -0.65
CPNE3-207ENST00000523588 PLEKHM2Q8IWE5 1019 aa11□□□□□ -0.65
CPNE3-207ENST00000523588 DEPDC4Q8N2C3 294 aa11□□□□□ -0.65
CPNE3-207ENST00000523588 TRIM52Q96A61 297 aa11□□□□□ -0.65
CPNE3-207ENST00000523588 OSBPL3Q9H4L5 887 aa11□□□□□ -0.65
CPNE3-207ENST00000523588 MAFBQ9Y5Q3 323 aaPredicted RBP11□□□□□ -0.65
CPNE3-207ENST00000523588 USP17L3A6NCW0 530 aa10.99□□□□□ -0.65
CPNE3-207ENST00000523588 USP17L4A6NCW7 530 aa10.99□□□□□ -0.65
CPNE3-207ENST00000523588 LZTS3O60299 673 aaPredicted RBP10.99□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms