RNA–Protein interactions for RNA: ENST00000523469.5

CPNE3-206, Transcript of copine 3, humanhuman

TSL 5

Gene CPNE3, Length 656 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-206ENST00000523469 CEP126Q9P2H0 1117 aa11.83□□□□□ -0.52
CPNE3-206ENST00000523469 PDZRN3Q9UPQ7 1066 aa11.83□□□□□ -0.52
CPNE3-206ENST00000523469 ADH1CP00326 375 aa11.82□□□□□ -0.52
CPNE3-206ENST00000523469 ALDH1A1P00352 501 aa11.82□□□□□ -0.52
CPNE3-206ENST00000523469 CALR3Q96L12 384 aaKnown RBP11.82□□□□□ -0.52
CPNE3-206ENST00000523469 KCTD15Q96SI1 283 aaPredicted RBP11.82□□□□□ -0.52
CPNE3-206ENST00000523469 GRM5P41594 1212 aa11.8□□□□□ -0.52
CPNE3-206ENST00000523469 ESPNB1AK53 854 aa11.79□□□□□ -0.52
CPNE3-206ENST00000523469 NR5A1Q13285 461 aa11.79□□□□□ -0.52
CPNE3-206ENST00000523469 SEPT12Q8IYM1 358 aa11.79□□□□□ -0.52
CPNE3-206ENST00000523469 GIGYF1O75420 1035 aaPredicted RBP11.78□□□□□ -0.52
CPNE3-206ENST00000523469 FSHRP23945 695 aa11.78□□□□□ -0.52
CPNE3-206ENST00000523469 RNF20Q5VTR2 975 aa11.78□□□□□ -0.52
CPNE3-206ENST00000523469 WASF2Q9Y6W5 498 aa11.78□□□□□ -0.52
CPNE3-206ENST00000523469 ARID3CA6NKF2 412 aa11.77□□□□□ -0.53
CPNE3-206ENST00000523469 SUPT5HO00267 1087 aaKnown RBP11.77□□□□□ -0.53
CPNE3-206ENST00000523469 SLFNL1Q499Z3 407 aa11.77□□□□□ -0.53
CPNE3-206ENST00000523469 CCDC125Q86Z20 511 aa11.77□□□□□ -0.53
CPNE3-206ENST00000523469 J3QL48 77 aa11.76□□□□□ -0.53
CPNE3-206ENST00000523469 INTS6LQ5JSJ4 861 aaKnown RBP11.76□□□□□ -0.53
CPNE3-206ENST00000523469 SMPD1P17405 629 aa11.75□□□□□ -0.53
CPNE3-206ENST00000523469 PHTF2Q8N3S3 785 aa11.75□□□□□ -0.53
CPNE3-206ENST00000523469 GFRA3O60609 400 aa11.74□□□□□ -0.53
CPNE3-206ENST00000523469 DHX9Q08211 1270 aaKnown RBP11.74□□□□□ -0.53
CPNE3-206ENST00000523469 RNF135Q8IUD6 432 aa11.74□□□□□ -0.53
CPNE3-206ENST00000523469 NRG2O14511 850 aaPredicted RBP11.73□□□□□ -0.53
CPNE3-206ENST00000523469 NNTQ13423 1086 aa11.73□□□□□ -0.53
CPNE3-206ENST00000523469 LAPTM4AQ15012 233 aa11.73□□□□□ -0.53
CPNE3-206ENST00000523469 NFATC2IPQ8NCF5 419 aa11.73□□□□□ -0.53
CPNE3-206ENST00000523469 NR3C2P08235 984 aa11.72□□□□□ -0.53
CPNE3-206ENST00000523469 RAB15P59190 212 aa11.72□□□□□ -0.53
CPNE3-206ENST00000523469 CCDC116Q8IYX3 515 aa11.72□□□□□ -0.53
CPNE3-206ENST00000523469 UCN2Q96RP3 112 aa11.72□□□□□ -0.53
CPNE3-206ENST00000523469 C1orf115Q9H7X2 142 aa11.72□□□□□ -0.53
CPNE3-206ENST00000523469 PIK3CDO00329 1044 aa11.7□□□□□ -0.54
CPNE3-206ENST00000523469 TRIM52Q96A61 297 aa11.7□□□□□ -0.54
CPNE3-206ENST00000523469 CCDC97Q96F63 343 aaPredicted RBP11.7□□□□□ -0.54
CPNE3-206ENST00000523469 SERPINA10Q9UK55 444 aa11.7□□□□□ -0.54
CPNE3-206ENST00000523469 CHIC2Q9UKJ5 165 aa11.7□□□□□ -0.54
CPNE3-206ENST00000523469 FAM187AA6NFU0 413 aa11.69□□□□□ -0.54
CPNE3-206ENST00000523469 ERVH48-1M5A8F1 160 aa11.69□□□□□ -0.54
CPNE3-206ENST00000523469 MAP7D1Q3KQU3 841 aa11.69□□□□□ -0.54
CPNE3-206ENST00000523469 PPP1R26Q5T8A7 1209 aaPredicted RBP11.69□□□□□ -0.54
CPNE3-206ENST00000523469 CCDC85AQ96PX6 553 aaPredicted RBP11.69□□□□□ -0.54
CPNE3-206ENST00000523469 EMILIN1Q9Y6C2 1016 aa11.69□□□□□ -0.54
CPNE3-206ENST00000523469 SKIP12755 728 aa11.68□□□□□ -0.54
CPNE3-206ENST00000523469 PLPP7Q8NBV4 271 aa11.68□□□□□ -0.54
CPNE3-206ENST00000523469 IRX2Q9BZI1 471 aaPredicted RBP11.68□□□□□ -0.54
CPNE3-206ENST00000523469 PPP1R12CQ9BZL4 782 aa11.68□□□□□ -0.54
CPNE3-206ENST00000523469 DOLKQ9UPQ8 538 aa11.68□□□□□ -0.54
CPNE3-206ENST00000523469 PCDHB11Q9Y5F2 797 aa11.68□□□□□ -0.54
CPNE3-206ENST00000523469 ATP9BO43861 1147 aa11.67□□□□□ -0.54
CPNE3-206ENST00000523469 DGAT1O75907 488 aa11.67□□□□□ -0.54
CPNE3-206ENST00000523469 TBC1D9Q6ZT07 1266 aa11.67□□□□□ -0.54
CPNE3-206ENST00000523469 CCDC82Q8N4S0 544 aa11.67□□□□□ -0.54
CPNE3-206ENST00000523469 HPS1Q92902 700 aa11.67□□□□□ -0.54
CPNE3-206ENST00000523469 PGPEP1Q9NXJ5 209 aa11.67□□□□□ -0.54
CPNE3-206ENST00000523469 PALM3A6NDB9 673 aaPredicted RBP11.66□□□□□ -0.54
CPNE3-206ENST00000523469 TFIP11Q9UBB9 837 aaKnown RBP11.66□□□□□ -0.54
CPNE3-206ENST00000523469 LZTS3O60299 673 aaPredicted RBP11.65□□□□□ -0.54
CPNE3-206ENST00000523469 TSGA10IPQ3SY00 556 aa11.65□□□□□ -0.54
CPNE3-206ENST00000523469 PKDCCQ504Y2 493 aa11.65□□□□□ -0.54
CPNE3-206ENST00000523469 TRAF7Q6Q0C0 670 aa11.65□□□□□ -0.54
CPNE3-206ENST00000523469 KLF16Q9BXK1 252 aaPredicted RBP11.65□□□□□ -0.54
CPNE3-206ENST00000523469 TMPRSS4Q9NRS4 437 aa11.65□□□□□ -0.54
CPNE3-206ENST00000523469 USP17L5A8MUK1 530 aa11.64□□□□□ -0.55
CPNE3-206ENST00000523469 WDR4P57081 412 aaKnown RBP11.64□□□□□ -0.55
CPNE3-206ENST00000523469 AVPP01185 164 aa11.63□□□□□ -0.55
CPNE3-206ENST00000523469 MYT1Q01538 1121 aa11.63□□□□□ -0.55
CPNE3-206ENST00000523469 PLEKHM2Q8IWE5 1019 aa11.63□□□□□ -0.55
CPNE3-206ENST00000523469 CDCA7Q9BWT1 371 aaPredicted RBP11.63□□□□□ -0.55
CPNE3-206ENST00000523469 MAFBQ9Y5Q3 323 aaPredicted RBP11.63□□□□□ -0.55
CPNE3-206ENST00000523469 ZIC2O95409 532 aaPredicted RBP11.62□□□□□ -0.55
CPNE3-206ENST00000523469 TIMP2P16035 220 aa11.62□□□□□ -0.55
CPNE3-206ENST00000523469 OXLD1Q5BKU9 147 aa11.62□□□□□ -0.55
CPNE3-206ENST00000523469 ZNF784Q8NCA9 323 aaPredicted RBP11.62□□□□□ -0.55
CPNE3-206ENST00000523469 ITPKCQ96DU7 683 aa11.62□□□□□ -0.55
CPNE3-206ENST00000523469 USP17L3A6NCW0 530 aa11.61□□□□□ -0.55
CPNE3-206ENST00000523469 USP17L4A6NCW7 530 aa11.61□□□□□ -0.55
CPNE3-206ENST00000523469 ERVK-9P63128 1117 aa11.61□□□□□ -0.55
CPNE3-206ENST00000523469 USP4Q13107 963 aa11.61□□□□□ -0.55
CPNE3-206ENST00000523469 EML3Q32P44 896 aa11.61□□□□□ -0.55
CPNE3-206ENST00000523469 CC2D2BQ6DHV5 1058 aa11.61□□□□□ -0.55
CPNE3-206ENST00000523469 USP17L2Q6R6M4 530 aa11.61□□□□□ -0.55
CPNE3-206ENST00000523469 USP17L1Q7RTZ2 530 aa11.61□□□□□ -0.55
CPNE3-206ENST00000523469 SIRT1Q96EB6 747 aa11.61□□□□□ -0.55
CPNE3-206ENST00000523469 NCOA4Q13772 614 aa11.6□□□□□ -0.55
CPNE3-206ENST00000523469 CTC1Q2NKJ3 1217 aa11.6□□□□□ -0.55
CPNE3-206ENST00000523469 CFAP70Q5T0N1 1121 aa11.6□□□□□ -0.55
CPNE3-206ENST00000523469 CYLDQ9NQC7 956 aa11.6□□□□□ -0.55
CPNE3-206ENST00000523469 LILRA1O75019 489 aa11.59□□□□□ -0.55
CPNE3-206ENST00000523469 MYCP01106 439 aaPredicted RBP11.59□□□□□ -0.55
CPNE3-206ENST00000523469 LMOD1P29536 600 aaPredicted RBP11.59□□□□□ -0.55
CPNE3-206ENST00000523469 DEPDC4Q8N2C3 294 aa11.59□□□□□ -0.55
CPNE3-206ENST00000523469 ESF1Q9H501 851 aaKnown RBP11.59□□□□□ -0.55
CPNE3-206ENST00000523469 ZFAND3Q9H8U3 227 aa11.59□□□□□ -0.55
CPNE3-206ENST00000523469 CAPN5O15484 640 aaPredicted RBP11.58□□□□□ -0.56
CPNE3-206ENST00000523469 SCTRP47872 440 aa11.58□□□□□ -0.56
CPNE3-206ENST00000523469 SMCPP49901 116 aaPredicted RBP11.58□□□□□ -0.56
CPNE3-206ENST00000523469 ADD1P35611 737 aaKnown RBP11.56□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 71.5 ms