RNA–Protein interactions for RNA: ENST00000522243.5

SDCBP-209, Transcript of syndecan binding protein, humanhuman

TSL 5

Gene SDCBP, Length 556 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-209ENST00000522243 PCGF6Q9BYE7 350 aa29.19■■■□□ 2.26
SDCBP-209ENST00000522243 NFAT5O94916 1531 aa29.19■■■□□ 2.26
SDCBP-209ENST00000522243 PARP4Q9UKK3 1724 aaKnown RBP29.17■■■□□ 2.26
SDCBP-209ENST00000522243 PUS7Q96PZ0 661 aaKnown RBP29.17■■■□□ 2.26
SDCBP-209ENST00000522243 A0A1W2PP64 1363 aa29.16■■■□□ 2.26
SDCBP-209ENST00000522243 USP31Q70CQ4 1352 aa29.16■■■□□ 2.26
SDCBP-209ENST00000522243 TERF2IPQ9NYB0 399 aa29.16■■■□□ 2.26
SDCBP-209ENST00000522243 WDR17Q8IZU2 1322 aa29.16■■■□□ 2.26
SDCBP-209ENST00000522243 EDC4Q6P2E9 1401 aaKnown RBP29.14■■■□□ 2.26
SDCBP-209ENST00000522243 CSB-PGBD3P0DP91 1061 aa29.14■■■□□ 2.26
SDCBP-209ENST00000522243 USP54Q70EL1 1684 aa29.14■■■□□ 2.26
SDCBP-209ENST00000522243 EZH2Q15910 746 aaKnown RBP29.12■■■□□ 2.25
SDCBP-209ENST00000522243 USP47Q96K76 1375 aa29.12■■■□□ 2.25
SDCBP-209ENST00000522243 WNK3Q9BYP7 1800 aa29.11■■■□□ 2.25
SDCBP-209ENST00000522243 LRRC37A3O60309 1634 aa29.1■■■□□ 2.25
SDCBP-209ENST00000522243 PSDA5PKW4 1024 aaPredicted RBP29.1■■■□□ 2.25
SDCBP-209ENST00000522243 APBA3O96018 575 aa29.1■■■□□ 2.25
SDCBP-209ENST00000522243 LTN1O94822 1766 aa29.1■■■□□ 2.25
SDCBP-209ENST00000522243 DISP2A7MBM2 1401 aa29.1■■■□□ 2.25
SDCBP-209ENST00000522243 DDB1Q16531 1140 aa29.08■■■□□ 2.25
SDCBP-209ENST00000522243 SLC24A1O60721 1099 aa29.07■■■□□ 2.24
SDCBP-209ENST00000522243 NINLQ9Y2I6 1382 aa29.06■■■□□ 2.24
SDCBP-209ENST00000522243 CARD10Q9BWT7 1032 aa29.06■■■□□ 2.24
SDCBP-209ENST00000522243 TMF1P82094 1093 aa29.05■■■□□ 2.24
SDCBP-209ENST00000522243 CAMKK2Q96RR4 588 aa29.05■■■□□ 2.24
SDCBP-209ENST00000522243 ABCC6O95255 1503 aa29.04■■■□□ 2.24
SDCBP-209ENST00000522243 OVOS2A0A0J9YW53 1432 aa29.04■■■□□ 2.24
SDCBP-209ENST00000522243 OVOS2Q6IE36 1432 aa29.04■■■□□ 2.24
SDCBP-209ENST00000522243 PEAK1Q9H792 1746 aa29.03■■■□□ 2.24
SDCBP-209ENST00000522243 OVOS2A0A0G2JMS6 1433 aa29.02■■■□□ 2.24
SDCBP-209ENST00000522243 CDCA7Q9BWT1 371 aaPredicted RBP29.01■■■□□ 2.23
SDCBP-209ENST00000522243 SBF2Q86WG5 1849 aa29■■■□□ 2.23
SDCBP-209ENST00000522243 TIMELESSQ9UNS1 1208 aa29■■■□□ 2.23
SDCBP-209ENST00000522243 CCDC7Q96M83 1385 aa29■■■□□ 2.23
SDCBP-209ENST00000522243 CLSPNQ9HAW4 1339 aa28.99■■■□□ 2.23
SDCBP-209ENST00000522243 R3HDM1Q15032 1099 aaKnown RBP28.99■■■□□ 2.23
SDCBP-209ENST00000522243 ANKRD36BQ8N2N9 1353 aa28.99■■■□□ 2.23
SDCBP-209ENST00000522243 ERBB3P21860 1342 aa28.98■■■□□ 2.23
SDCBP-209ENST00000522243 MARCH10Q8NA82 808 aaPredicted RBP28.98■■■□□ 2.23
SDCBP-209ENST00000522243 NLRP2Q9NX02 1062 aa28.98■■■□□ 2.23
SDCBP-209ENST00000522243 C11orf95C9JLR9 678 aaPredicted RBP28.97■■■□□ 2.23
SDCBP-209ENST00000522243 ANKRD24Q8TF21 1146 aa28.97■■■□□ 2.23
SDCBP-209ENST00000522243 COG3Q96JB2 828 aa28.97■■■□□ 2.23
SDCBP-209ENST00000522243 RREB1Q92766 1687 aa28.96■■■□□ 2.23
SDCBP-209ENST00000522243 EXOC5O00471 708 aa28.95■■■□□ 2.22
SDCBP-209ENST00000522243 FBLN1P23142 703 aa28.95■■■□□ 2.22
SDCBP-209ENST00000522243 PARD3Q8TEW0 1356 aa28.95■■■□□ 2.22
SDCBP-209ENST00000522243 NUP188Q5SRE5 1749 aa28.94■■■□□ 2.22
SDCBP-209ENST00000522243 PTF1AQ7RTS3 328 aa28.93■■■□□ 2.22
SDCBP-209ENST00000522243 LTV1Q96GA3 475 aaPredicted RBP28.92■■■□□ 2.22
SDCBP-209ENST00000522243 CDCA8Q53HL2 280 aa28.91■■■□□ 2.22
SDCBP-209ENST00000522243 IP6K1Q92551 441 aa28.91■■■□□ 2.22
SDCBP-209ENST00000522243 GGNBP2Q9H3C7 697 aa28.9■■■□□ 2.22
SDCBP-209ENST00000522243 CCER1Q8TC90 406 aaPredicted RBP28.89■■■□□ 2.22
SDCBP-209ENST00000522243 LRP5O75197 1615 aa28.89■■■□□ 2.22
SDCBP-209ENST00000522243 MAP3K19Q56UN5 1328 aa28.89■■■□□ 2.21
SDCBP-209ENST00000522243 TNS2Q63HR2 1409 aa28.88■■■□□ 2.21
SDCBP-209ENST00000522243 FYB1O15117 783 aa28.88■■■□□ 2.21
SDCBP-209ENST00000522243 IL2RBP14784 551 aa28.88■■■□□ 2.21
SDCBP-209ENST00000522243 BCL11BQ9C0K0 894 aaPredicted RBP28.88■■■□□ 2.21
SDCBP-209ENST00000522243 AMPHP49418 695 aa28.86■■■□□ 2.21
SDCBP-209ENST00000522243 MYOM1P52179 1685 aa28.86■■■□□ 2.21
SDCBP-209ENST00000522243 HOXC9P31274 260 aa28.85■■■□□ 2.21
SDCBP-209ENST00000522243 NBPF14Q5TI25 921 aa28.85■■■□□ 2.21
SDCBP-209ENST00000522243 KIF20BQ96Q89 1820 aa28.85■■■□□ 2.21
SDCBP-209ENST00000522243 BCL9O00512 1426 aa28.85■■■□□ 2.21
SDCBP-209ENST00000522243 PLSCR1O15162 318 aa28.83■■■□□ 2.21
SDCBP-209ENST00000522243 RRS1Q15050 365 aaKnown RBP28.83■■■□□ 2.21
SDCBP-209ENST00000522243 RGPD2P0DJD1 1756 aa28.83■■■□□ 2.21
SDCBP-209ENST00000522243 FAM208AQ9UK61 1670 aaKnown RBP28.82■■■□□ 2.2
SDCBP-209ENST00000522243 RGPD3A6NKT7 1758 aaPredicted RBP28.81■■■□□ 2.2
SDCBP-209ENST00000522243 RGPD4Q7Z3J3 1758 aa28.81■■■□□ 2.2
SDCBP-209ENST00000522243 KCNQ2O43526 872 aa28.8■■■□□ 2.2
SDCBP-209ENST00000522243 ACSBG1Q96GR2 724 aa28.8■■■□□ 2.2
SDCBP-209ENST00000522243 POLR3GLQ9BT43 218 aa28.8■■■□□ 2.2
SDCBP-209ENST00000522243 CARD14Q9BXL6 1004 aa28.8■■■□□ 2.2
SDCBP-209ENST00000522243 NSD3Q9BZ95 1437 aa28.77■■■□□ 2.2
SDCBP-209ENST00000522243 PROM2Q8N271 834 aa28.76■■■□□ 2.19
SDCBP-209ENST00000522243 NHSQ6T4R5 1651 aa28.76■■■□□ 2.19
SDCBP-209ENST00000522243 KAT6BQ8WYB5 2073 aa28.74■■■□□ 2.19
SDCBP-209ENST00000522243 SRCAPQ6ZRS2 3230 aa28.74■■■□□ 2.19
SDCBP-209ENST00000522243 RTL1A6NKG5 1358 aa28.74■■■□□ 2.19
SDCBP-209ENST00000522243 DDX54Q8TDD1 881 aaKnown RBP28.73■■■□□ 2.19
SDCBP-209ENST00000522243 HSPA5P11021 654 aaKnown RBP28.72■■■□□ 2.19
SDCBP-209ENST00000522243 EIF4G2P78344 907 aaKnown RBP eCLIP28.72■■■□□ 2.19
SDCBP-209ENST00000522243 ANO8Q9HCE9 1232 aaPredicted RBP28.72■■■□□ 2.19
SDCBP-209ENST00000522243 TXNRD1Q16881 649 aa28.71■■■□□ 2.19
SDCBP-209ENST00000522243 NBPF6Q5VWK0 638 aa28.7■■■□□ 2.18
SDCBP-209ENST00000522243 USHBP1Q8N6Y0 703 aa28.7■■■□□ 2.18
SDCBP-209ENST00000522243 NBPF4Q96M43 638 aa28.7■■■□□ 2.18
SDCBP-209ENST00000522243 HSP90AB2PQ58FF8 381 aa28.69■■■□□ 2.18
SDCBP-209ENST00000522243 BTAF1O14981 1849 aa28.68■■■□□ 2.18
SDCBP-209ENST00000522243 MEGF6O75095 1541 aa28.67■■■□□ 2.18
SDCBP-209ENST00000522243 SMG6Q86US8 1419 aaKnown RBP28.66■■■□□ 2.18
SDCBP-209ENST00000522243 FLT4P35916 1363 aa28.65■■■□□ 2.18
SDCBP-209ENST00000522243 EMILIN1Q9Y6C2 1016 aa28.65■■■□□ 2.18
SDCBP-209ENST00000522243 SHANK3Q9BYB0 1731 aa28.65■■■□□ 2.18
SDCBP-209ENST00000522243 INSRP06213 1382 aa28.64■■■□□ 2.18
SDCBP-209ENST00000522243 ZCRB1Q8TBF4 217 aaKnown RBP28.64■■■□□ 2.18
SDCBP-209ENST00000522243 PPM1GO15355 546 aaPredicted RBP28.62■■■□□ 2.17
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms