RNA–Protein interactions for RNA: ENST00000517417.2

PCDHGA1-202, Transcript of protocadherin gamma subfamily A, 1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene PCDHGA1, Length 4,604 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1-202ENST00000517417 FAM13BQ9NYF5 915 aa13.17□□□□□ -0.3
PCDHGA1-202ENST00000517417 FAM184AQ8NB25 1140 aa13.16□□□□□ -0.3
PCDHGA1-202ENST00000517417 DDX58O95786 925 aaKnown RBP13.16□□□□□ -0.3
PCDHGA1-202ENST00000517417 CLCN1P35523 988 aa13.16□□□□□ -0.3
PCDHGA1-202ENST00000517417 RASSF8Q8NHQ8 419 aa13.16□□□□□ -0.3
PCDHGA1-202ENST00000517417 TMX4Q9H1E5 349 aaPredicted RBP13.16□□□□□ -0.3
PCDHGA1-202ENST00000517417 ZKSCAN1P17029 563 aaPredicted RBP13.16□□□□□ -0.3
PCDHGA1-202ENST00000517417 G3BP1Q13283 466 aaKnown RBP eCLIP13.16□□□□□ -0.3
PCDHGA1-202ENST00000517417 PLA2R1Q13018 1463 aa13.16□□□□□ -0.3
PCDHGA1-202ENST00000517417 RRP9O43818 475 aaKnown RBP13.16□□□□□ -0.3
PCDHGA1-202ENST00000517417 R3HCC1Q9Y3T6 440 aaKnown RBP13.16□□□□□ -0.3
PCDHGA1-202ENST00000517417 ABCC1P33527 1531 aa13.15□□□□□ -0.3
PCDHGA1-202ENST00000517417 PRDM15P57071 1507 aaPredicted RBP13.15□□□□□ -0.3
PCDHGA1-202ENST00000517417 HDAC1Q13547 482 aaPredicted RBP13.15□□□□□ -0.3
PCDHGA1-202ENST00000517417 RABEP1Q15276 862 aa13.15□□□□□ -0.3
PCDHGA1-202ENST00000517417 CSPP1Q1MSJ5 1256 aa13.15□□□□□ -0.3
PCDHGA1-202ENST00000517417 SULT6B1Q6IMI4 303 aa13.15□□□□□ -0.3
PCDHGA1-202ENST00000517417 ZNF428Q96B54 188 aa13.15□□□□□ -0.3
PCDHGA1-202ENST00000517417 G3V3G9 751 aa13.15□□□□□ -0.3
PCDHGA1-202ENST00000517417 ESCO1Q5FWF5 840 aa13.15□□□□□ -0.3
PCDHGA1-202ENST00000517417 DCAF8Q5TAQ9 597 aa13.15□□□□□ -0.3
PCDHGA1-202ENST00000517417 ATF3P18847 181 aa13.14□□□□□ -0.31
PCDHGA1-202ENST00000517417 RUFY2Q8WXA3 655 aa13.14□□□□□ -0.31
PCDHGA1-202ENST00000517417 KIF3AQ9Y496 699 aa13.14□□□□□ -0.31
PCDHGA1-202ENST00000517417 TWISTNBQ3B726 338 aaPredicted RBP13.14□□□□□ -0.31
PCDHGA1-202ENST00000517417 ZNF518AQ6AHZ1 1483 aa13.14□□□□□ -0.31
PCDHGA1-202ENST00000517417 PRPF40AO75400 957 aaKnown RBP13.14□□□□□ -0.31
PCDHGA1-202ENST00000517417 SSFA2P28290 1259 aa13.14□□□□□ -0.31
PCDHGA1-202ENST00000517417 RIC3Q7Z5B4 369 aa13.14□□□□□ -0.31
PCDHGA1-202ENST00000517417 APPP05067 770 aa13.13□□□□□ -0.31
PCDHGA1-202ENST00000517417 CCDC27Q2M243 656 aa13.13□□□□□ -0.31
PCDHGA1-202ENST00000517417 PKNOX2Q96KN3 472 aa13.13□□□□□ -0.31
PCDHGA1-202ENST00000517417 TRPM1Q7Z4N2 1603 aa13.13□□□□□ -0.31
PCDHGA1-202ENST00000517417 UBTFL1P0CB47 393 aaPredicted RBP13.13□□□□□ -0.31
PCDHGA1-202ENST00000517417 NOS1P29475 1434 aa13.13□□□□□ -0.31
PCDHGA1-202ENST00000517417 MAST1Q9Y2H9 1570 aa13.13□□□□□ -0.31
PCDHGA1-202ENST00000517417 ANKLE2Q86XL3 938 aa13.12□□□□□ -0.31
PCDHGA1-202ENST00000517417 NEUROD6Q96NK8 337 aa13.12□□□□□ -0.31
PCDHGA1-202ENST00000517417 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP13.11□□□□□ -0.31
PCDHGA1-202ENST00000517417 RRS1Q15050 365 aaKnown RBP13.11□□□□□ -0.31
PCDHGA1-202ENST00000517417 RNF214Q8ND24 703 aa13.11□□□□□ -0.31
PCDHGA1-202ENST00000517417 SURF6O75683 361 aaKnown RBP13.11□□□□□ -0.31
PCDHGA1-202ENST00000517417 PHF14O94880 888 aa13.11□□□□□ -0.31
PCDHGA1-202ENST00000517417 ATP6V1DQ9Y5K8 247 aa13.11□□□□□ -0.31
PCDHGA1-202ENST00000517417 USP19O94966 1318 aa13.11□□□□□ -0.31
PCDHGA1-202ENST00000517417 RBM10P98175 930 aaKnown RBP13.11□□□□□ -0.31
PCDHGA1-202ENST00000517417 NUCB1Q02818 461 aa13.11□□□□□ -0.31
PCDHGA1-202ENST00000517417 BMP2KLQ5H9B9 411 aa13.11□□□□□ -0.31
PCDHGA1-202ENST00000517417 CCDC34Q96HJ3 373 aa13.11□□□□□ -0.31
PCDHGA1-202ENST00000517417 THUMPD2Q9BTF0 503 aaKnown RBP13.11□□□□□ -0.31
PCDHGA1-202ENST00000517417 ABCC11Q96J66 1382 aa13.1□□□□□ -0.31
PCDHGA1-202ENST00000517417 SLC4A2P04920 1241 aa13.1□□□□□ -0.31
PCDHGA1-202ENST00000517417 ZSCAN30Q86W11 494 aa13.1□□□□□ -0.31
PCDHGA1-202ENST00000517417 VPS37CA5D8V6 355 aaPredicted RBP13.1□□□□□ -0.31
PCDHGA1-202ENST00000517417 ALDH1L2Q3SY69 923 aa13.1□□□□□ -0.31
PCDHGA1-202ENST00000517417 TPM4P67936 248 aa13.1□□□□□ -0.31
PCDHGA1-202ENST00000517417 TBC1D9Q6ZT07 1266 aa13.1□□□□□ -0.31
PCDHGA1-202ENST00000517417 PLXNC1O60486 1568 aa13.09□□□□□ -0.31
PCDHGA1-202ENST00000517417 PROSER2Q86WR7 435 aaPredicted RBP13.09□□□□□ -0.31
PCDHGA1-202ENST00000517417 RPGRIP1LQ68CZ1 1315 aa13.09□□□□□ -0.31
PCDHGA1-202ENST00000517417 SNX21Q969T3 373 aa13.08□□□□□ -0.31
PCDHGA1-202ENST00000517417 ANTXR1Q9H6X2 564 aa13.08□□□□□ -0.31
PCDHGA1-202ENST00000517417 GAS2L2Q8NHY3 880 aa13.08□□□□□ -0.32
PCDHGA1-202ENST00000517417 C14orf93Q9H972 538 aaKnown RBP13.08□□□□□ -0.32
PCDHGA1-202ENST00000517417 SYNMO15061 1565 aa13.08□□□□□ -0.32
PCDHGA1-202ENST00000517417 FCHSD2O94868 740 aa13.08□□□□□ -0.32
PCDHGA1-202ENST00000517417 SMC5Q8IY18 1101 aa13.08□□□□□ -0.32
PCDHGA1-202ENST00000517417 HSP90AB4PQ58FF6 505 aa13.08□□□□□ -0.32
PCDHGA1-202ENST00000517417 UNC13BO14795 1591 aa13.07□□□□□ -0.32
PCDHGA1-202ENST00000517417 CPLX1O14810 134 aa13.07□□□□□ -0.32
PCDHGA1-202ENST00000517417 CCDC30Q5VVM6 783 aa13.07□□□□□ -0.32
PCDHGA1-202ENST00000517417 WAPLQ7Z5K2 1190 aa13.07□□□□□ -0.32
PCDHGA1-202ENST00000517417 CCDC39Q9UFE4 941 aa13.07□□□□□ -0.32
PCDHGA1-202ENST00000517417 NSD2O96028 1365 aa13.07□□□□□ -0.32
PCDHGA1-202ENST00000517417 ZFYVE16Q7Z3T8 1539 aa13.07□□□□□ -0.32
PCDHGA1-202ENST00000517417 NEO1Q92859 1461 aa13.07□□□□□ -0.32
PCDHGA1-202ENST00000517417 BECN2A8MW95 431 aa13.07□□□□□ -0.32
PCDHGA1-202ENST00000517417 NEK4P51957 841 aa13.07□□□□□ -0.32
PCDHGA1-202ENST00000517417 FOSBP53539 338 aa13.07□□□□□ -0.32
PCDHGA1-202ENST00000517417 CWC22Q9HCG8 908 aaKnown RBP13.07□□□□□ -0.32
PCDHGA1-202ENST00000517417 GNAI3P08754 354 aa13.06□□□□□ -0.32
PCDHGA1-202ENST00000517417 RNF20Q5VTR2 975 aa13.06□□□□□ -0.32
PCDHGA1-202ENST00000517417 RBM42Q9BTD8 480 aaKnown RBP13.06□□□□□ -0.32
PCDHGA1-202ENST00000517417 ERC2O15083 957 aa13.06□□□□□ -0.32
PCDHGA1-202ENST00000517417 NCBP3Q53F19 620 aaKnown RBP13.06□□□□□ -0.32
PCDHGA1-202ENST00000517417 CLASRPQ8N2M8 674 aaKnown RBP13.06□□□□□ -0.32
PCDHGA1-202ENST00000517417 BAG4O95429 457 aaKnown RBP13.06□□□□□ -0.32
PCDHGA1-202ENST00000517417 AKAP17AQ02040 695 aaKnown RBP13.06□□□□□ -0.32
PCDHGA1-202ENST00000517417 HDGFL1Q5TGJ6 251 aa13.06□□□□□ -0.32
PCDHGA1-202ENST00000517417 ATP7AQ04656 1500 aa13.06□□□□□ -0.32
PCDHGA1-202ENST00000517417 PES1O00541 588 aaKnown RBP13.06□□□□□ -0.32
PCDHGA1-202ENST00000517417 RAB3GAP1Q15042 981 aa13.06□□□□□ -0.32
PCDHGA1-202ENST00000517417 NFE2L2Q16236 605 aa13.06□□□□□ -0.32
PCDHGA1-202ENST00000517417 CPLX2Q6PUV4 134 aaKnown RBP13.06□□□□□ -0.32
PCDHGA1-202ENST00000517417 ZBTB40Q9NUA8 1239 aa13.06□□□□□ -0.32
PCDHGA1-202ENST00000517417 SMC3Q9UQE7 1217 aa13.06□□□□□ -0.32
PCDHGA1-202ENST00000517417 RTEL1-TNFRSF6BF6WH68 1400 aa13.06□□□□□ -0.32
PCDHGA1-202ENST00000517417 IL16Q14005 1332 aa13.05□□□□□ -0.32
PCDHGA1-202ENST00000517417 MARCH6O60337 910 aa13.05□□□□□ -0.32
PCDHGA1-202ENST00000517417 LRRFIP1Q32MZ4 808 aaKnown RBP13.05□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 66.5 ms