RNA–Protein interactions for RNA: ENST00000515035.5

TCOF1-214, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 2

Gene TCOF1, Length 5,240 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-214ENST00000515035 AEBP1Q8IUX7 1158 aa15.78■□□□□ 0.12
TCOF1-214ENST00000515035 CCDC43Q96MW1 224 aaKnown RBP15.78■□□□□ 0.12
TCOF1-214ENST00000515035 C1orf115Q9H7X2 142 aa15.78■□□□□ 0.12
TCOF1-214ENST00000515035 BICRAQ9NZM4 1560 aa15.78■□□□□ 0.12
TCOF1-214ENST00000515035 EXOSC9Q06265 439 aaKnown RBP15.78■□□□□ 0.12
TCOF1-214ENST00000515035 CABP2Q9NPB3 220 aa15.78■□□□□ 0.12
TCOF1-214ENST00000515035 NLRP2Q9NX02 1062 aa15.78■□□□□ 0.12
TCOF1-214ENST00000515035 KDM4AO75164 1064 aa15.77■□□□□ 0.12
TCOF1-214ENST00000515035 PIP4K2AP48426 406 aaPredicted RBP15.77■□□□□ 0.12
TCOF1-214ENST00000515035 CBX1P83916 185 aa15.77■□□□□ 0.12
TCOF1-214ENST00000515035 FILIP1Q7Z7B0 1213 aa15.77■□□□□ 0.12
TCOF1-214ENST00000515035 VPS37DQ86XT2 251 aa15.77■□□□□ 0.12
TCOF1-214ENST00000515035 CFAP70Q5T0N1 1121 aa15.77■□□□□ 0.12
TCOF1-214ENST00000515035 PPFIBP1Q86W92 1011 aa15.77■□□□□ 0.12
TCOF1-214ENST00000515035 ZNHIT6Q9NWK9 470 aaKnown RBP15.77■□□□□ 0.12
TCOF1-214ENST00000515035 MAGEC2Q9UBF1 373 aaPredicted RBP15.77■□□□□ 0.11
TCOF1-214ENST00000515035 UBXN4Q92575 508 aa15.77■□□□□ 0.11
TCOF1-214ENST00000515035 PDCL3Q9H2J4 239 aa15.76■□□□□ 0.11
TCOF1-214ENST00000515035 ANKLE2Q86XL3 938 aa15.76■□□□□ 0.11
TCOF1-214ENST00000515035 JMYQ8N9B5 988 aa15.76■□□□□ 0.11
TCOF1-214ENST00000515035 ME1P48163 572 aa15.75■□□□□ 0.11
TCOF1-214ENST00000515035 CCDC102AQ96A19 550 aa15.75■□□□□ 0.11
TCOF1-214ENST00000515035 CYP46A1Q9Y6A2 500 aa15.75■□□□□ 0.11
TCOF1-214ENST00000515035 ERLIN2O94905 339 aa15.75■□□□□ 0.11
TCOF1-214ENST00000515035 ESCO1Q5FWF5 840 aa15.75■□□□□ 0.11
TCOF1-214ENST00000515035 GGNBP2Q9H3C7 697 aa15.75■□□□□ 0.11
TCOF1-214ENST00000515035 MTHFSP49914 203 aa15.74■□□□□ 0.11
TCOF1-214ENST00000515035 TRIM34Q9BYJ4 488 aa15.74■□□□□ 0.11
TCOF1-214ENST00000515035 MAGI1Q96QZ7 1491 aaPredicted RBP15.74■□□□□ 0.11
TCOF1-214ENST00000515035 HIP1O00291 1037 aa15.74■□□□□ 0.11
TCOF1-214ENST00000515035 CCDC181Q5TID7 509 aa15.74■□□□□ 0.11
TCOF1-214ENST00000515035 SYCE3A1L190 88 aa15.74■□□□□ 0.11
TCOF1-214ENST00000515035 PPP2R1AP30153 589 aa15.74■□□□□ 0.11
TCOF1-214ENST00000515035 NUP62CLQ9H1M0 184 aa15.74■□□□□ 0.11
TCOF1-214ENST00000515035 SMG6Q86US8 1419 aaKnown RBP15.74■□□□□ 0.11
TCOF1-214ENST00000515035 LARP1BQ659C4 914 aaKnown RBP15.73■□□□□ 0.11
TCOF1-214ENST00000515035 TMCO3Q6UWJ1 677 aa15.73■□□□□ 0.11
TCOF1-214ENST00000515035 RIC3Q7Z5B4 369 aa15.73■□□□□ 0.11
TCOF1-214ENST00000515035 FAM193AP78312 1265 aa15.73■□□□□ 0.11
TCOF1-214ENST00000515035 CEP57L1Q8IYX8 460 aa15.73■□□□□ 0.11
TCOF1-214ENST00000515035 CBFA2T2O43439 604 aa15.73■□□□□ 0.11
TCOF1-214ENST00000515035 CENPHQ9H3R5 247 aa15.73■□□□□ 0.11
TCOF1-214ENST00000515035 RPGRIP1LQ68CZ1 1315 aa15.73■□□□□ 0.11
TCOF1-214ENST00000515035 SART3Q15020 963 aaKnown RBP15.72■□□□□ 0.11
TCOF1-214ENST00000515035 NEFHP12036 1026 aa15.72■□□□□ 0.11
TCOF1-214ENST00000515035 TXLNAP40222 546 aa15.72■□□□□ 0.11
TCOF1-214ENST00000515035 ABTB2Q8N961 1025 aa15.72■□□□□ 0.11
TCOF1-214ENST00000515035 IQGAP2Q13576 1575 aa15.72■□□□□ 0.11
TCOF1-214ENST00000515035 AIMP1Q12904 312 aaKnown RBP15.72■□□□□ 0.11
TCOF1-214ENST00000515035 NOB1Q9ULX3 412 aaKnown RBP15.72■□□□□ 0.11
TCOF1-214ENST00000515035 DHX37Q8IY37 1157 aaKnown RBP15.72■□□□□ 0.11
TCOF1-214ENST00000515035 KIAA1107Q9UPP5 1409 aa15.72■□□□□ 0.11
TCOF1-214ENST00000515035 PRAM1Q96QH2 718 aa15.71■□□□□ 0.11
TCOF1-214ENST00000515035 LRRCC1Q9C099 1032 aa15.71■□□□□ 0.11
TCOF1-214ENST00000515035 DACH1Q9UI36 760 aa15.71■□□□□ 0.11
TCOF1-214ENST00000515035 NUTM2GQ5VZR2 741 aa15.71■□□□□ 0.11
TCOF1-214ENST00000515035 PNISRQ8TF01 805 aaKnown RBP15.71■□□□□ 0.11
TCOF1-214ENST00000515035 UTP3Q9NQZ2 479 aaKnown RBP eCLIP15.71■□□□□ 0.111e-6■■■■■ 169.1
TCOF1-214ENST00000515035 XPCQ01831 940 aaPredicted RBP15.71■□□□□ 0.11
TCOF1-214ENST00000515035 STK3Q13188 491 aa15.71■□□□□ 0.11
TCOF1-214ENST00000515035 ANKRD1Q15327 319 aa15.71■□□□□ 0.11
TCOF1-214ENST00000515035 SPATA32Q96LK8 384 aa15.71■□□□□ 0.11
TCOF1-214ENST00000515035 CTDP1Q9Y5B0 961 aaPredicted RBP15.71■□□□□ 0.11
TCOF1-214ENST00000515035 DNAJC2Q99543 621 aaKnown RBP15.71■□□□□ 0.1
TCOF1-214ENST00000515035 LUC7LQ9NQ29 371 aaKnown RBP15.71■□□□□ 0.1
TCOF1-214ENST00000515035 CGNQ9P2M7 1197 aaKnown RBP15.7■□□□□ 0.1
TCOF1-214ENST00000515035 TWISTNBQ3B726 338 aaPredicted RBP15.7■□□□□ 0.1
TCOF1-214ENST00000515035 UPF3BQ9BZI7 483 aaKnown RBP15.7■□□□□ 0.1
TCOF1-214ENST00000515035 CD109Q6YHK3 1445 aa15.69■□□□□ 0.1
TCOF1-214ENST00000515035 KIF2AO00139 706 aaPredicted RBP15.69■□□□□ 0.1
TCOF1-214ENST00000515035 GNAI2P04899 355 aa15.69■□□□□ 0.1
TCOF1-214ENST00000515035 ZRSR2Q15696 482 aaKnown RBP15.69■□□□□ 0.1
TCOF1-214ENST00000515035 CHD1LQ86WJ1 897 aa15.69■□□□□ 0.1
TCOF1-214ENST00000515035 TSR2Q969E8 191 aaKnown RBP15.69■□□□□ 0.1
TCOF1-214ENST00000515035 CALCOCO1Q9P1Z2 691 aa15.69■□□□□ 0.1
TCOF1-214ENST00000515035 UBE2Q2Q8WVN8 375 aa15.69■□□□□ 0.1
TCOF1-214ENST00000515035 MVPQ14764 893 aaKnown RBP15.69■□□□□ 0.1
TCOF1-214ENST00000515035 PTPN14Q15678 1187 aa15.69■□□□□ 0.1
TCOF1-214ENST00000515035 TAX1BP1Q86VP1 789 aa15.69■□□□□ 0.1
TCOF1-214ENST00000515035 LRRFIP2Q9Y608 721 aaKnown RBP15.69■□□□□ 0.1
TCOF1-214ENST00000515035 FYB1O15117 783 aa15.68■□□□□ 0.1
TCOF1-214ENST00000515035 GIMAP7Q8NHV1 300 aa15.68■□□□□ 0.1
TCOF1-214ENST00000515035 ZNF692Q9BU19 519 aaPredicted RBP15.68■□□□□ 0.1
TCOF1-214ENST00000515035 EPRSP07814 1512 aaKnown RBP15.68■□□□□ 0.1
TCOF1-214ENST00000515035 GRIN2AQ12879 1464 aa15.68■□□□□ 0.1
TCOF1-214ENST00000515035 MAP3K11Q16584 847 aa15.68■□□□□ 0.1
TCOF1-214ENST00000515035 ZMYND15Q9H091 742 aa15.68■□□□□ 0.1
TCOF1-214ENST00000515035 CCDC30Q5VVM6 783 aa15.68■□□□□ 0.1
TCOF1-214ENST00000515035 IQCEQ6IPM2 695 aa15.68■□□□□ 0.1
TCOF1-214ENST00000515035 ENOX2Q16206 610 aaKnown RBP15.67■□□□□ 0.1
TCOF1-214ENST00000515035 INCENPQ9NQS7 918 aa15.67■□□□□ 0.1
TCOF1-214ENST00000515035 MTMR7Q9Y216 660 aa15.67■□□□□ 0.1
TCOF1-214ENST00000515035 ATF7IPQ6VMQ6 1270 aa15.67■□□□□ 0.1
TCOF1-214ENST00000515035 ZHX1Q9UKY1 873 aaPredicted RBP15.67■□□□□ 0.1
TCOF1-214ENST00000515035 ANKRD30BQ9BXX2 1392 aa15.67■□□□□ 0.1
TCOF1-214ENST00000515035 DAPK1P53355 1430 aa15.67■□□□□ 0.1
TCOF1-214ENST00000515035 CCAR1Q8IX12 1150 aaKnown RBP15.67■□□□□ 0.1
TCOF1-214ENST00000515035 CDK5RAP3Q96JB5 506 aa15.67■□□□□ 0.1
TCOF1-214ENST00000515035 CFAP45Q9UL16 551 aa15.67■□□□□ 0.1
TCOF1-214ENST00000515035 TRERF1Q96PN7 1200 aa15.66■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 77.2 ms